RNA–Protein interactions for RNA: ENST00000301821.10

RPSA-201, Transcript of ribosomal protein SA, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RPSA, Length 1,171 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPSA-201ENST00000301821 NISCHQ9Y2I1 1504 aa26.03■■□□□ 1.76
RPSA-201ENST00000301821 ABCC9O60706 1549 aa23.86■■□□□ 1.41
RPSA-201ENST00000301821 CCDC180Q9P1Z9 1646 aa23.53■■□□□ 1.36
RPSA-201ENST00000301821 DNAJC5BQ9UF47 199 aa22.6■■□□□ 1.21
RPSA-201ENST00000301821 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
RPSA-201ENST00000301821 AEBP2Q6ZN18 517 aaPredicted RBP22.52■■□□□ 1.2
RPSA-201ENST00000301821 NACADO15069 1562 aa22.29■■□□□ 1.16
RPSA-201ENST00000301821 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.13
RPSA-201ENST00000301821 PABPN1Q86U42 306 aaKnown RBP eCLIP22.14■■□□□ 1.13
RPSA-201ENST00000301821 UNC13AQ9UPW8 1703 aa22.06■■□□□ 1.12
RPSA-201ENST00000301821 BICRAQ9NZM4 1560 aa21.9■■□□□ 1.1
RPSA-201ENST00000301821 MYO15BQ96JP2 1530 aa21.84■■□□□ 1.09
RPSA-201ENST00000301821 CHIC1Q5VXU3 224 aa21.59■■□□□ 1.05
RPSA-201ENST00000301821 SHROOM4Q9ULL8 1493 aa21.54■■□□□ 1.04
RPSA-201ENST00000301821 CC2D2AQ9P2K1 1620 aa21.54■■□□□ 1.04
RPSA-201ENST00000301821 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.04
RPSA-201ENST00000301821 CECR2Q9BXF3 1484 aa21.51■■□□□ 1.03
RPSA-201ENST00000301821 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
RPSA-201ENST00000301821 DCAF1Q9Y4B6 1507 aa21.45■■□□□ 1.02
RPSA-201ENST00000301821 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
RPSA-201ENST00000301821 DNAJC5Q9H3Z4 198 aa20.97■□□□□ 0.95
RPSA-201ENST00000301821 CUX2O14529 1486 aa20.66■□□□□ 0.9
RPSA-201ENST00000301821 ERCC6Q03468 1493 aa20.63■□□□□ 0.89
RPSA-201ENST00000301821 NCAPD3P42695 1498 aa20.56■□□□□ 0.88
RPSA-201ENST00000301821 ATAD2BQ9ULI0 1458 aa20.48■□□□□ 0.87
RPSA-201ENST00000301821 HMGXB3Q12766 1538 aa20.42■□□□□ 0.86
RPSA-201ENST00000301821 SMARCA2P51531 1590 aa20.41■□□□□ 0.86
RPSA-201ENST00000301821 NESP48681 1621 aa20.41■□□□□ 0.86
RPSA-201ENST00000301821 SMARCA4P51532 1647 aa20.41■□□□□ 0.86
RPSA-201ENST00000301821 BAZ1BQ9UIG0 1483 aaKnown RBP20.29■□□□□ 0.84
RPSA-201ENST00000301821 THOC2Q8NI27 1593 aaKnown RBP20.28■□□□□ 0.84
RPSA-201ENST00000301821 BAZ1AQ9NRL2 1556 aaPredicted RBP20.25■□□□□ 0.83
RPSA-201ENST00000301821 LAMC3Q9Y6N6 1575 aa20.18■□□□□ 0.82
RPSA-201ENST00000301821 PEG3Q9GZU2 1588 aa20.17■□□□□ 0.82
RPSA-201ENST00000301821 KIF21AQ7Z4S6 1674 aa20.15■□□□□ 0.82
RPSA-201ENST00000301821 MROH2BQ7Z745 1585 aa20.08■□□□□ 0.8
RPSA-201ENST00000301821 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
RPSA-201ENST00000301821 TRIM41Q8WV44 630 aa20■□□□□ 0.79
RPSA-201ENST00000301821 MRC2Q9UBG0 1479 aa19.94■□□□□ 0.78
RPSA-201ENST00000301821 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
RPSA-201ENST00000301821 WDR62O43379 1518 aa19.91■□□□□ 0.78
RPSA-201ENST00000301821 WIZO95785 1651 aa19.84■□□□□ 0.77
RPSA-201ENST00000301821 CEP164Q9UPV0 1460 aa19.8■□□□□ 0.76
RPSA-201ENST00000301821 FANCD2Q9BXW9 1451 aa19.74■□□□□ 0.75
RPSA-201ENST00000301821 CFTRP13569 1480 aa19.64■□□□□ 0.73
RPSA-201ENST00000301821 OSCARQ8IYS5 282 aa19.63■□□□□ 0.73
RPSA-201ENST00000301821 URB2Q14146 1524 aaKnown RBP19.6■□□□□ 0.73
RPSA-201ENST00000301821 TOP2AP11388 1531 aaKnown RBP19.56■□□□□ 0.72
RPSA-201ENST00000301821 RSF1Q96T23 1441 aaPredicted RBP19.51■□□□□ 0.71
RPSA-201ENST00000301821 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
RPSA-201ENST00000301821 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
RPSA-201ENST00000301821 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
RPSA-201ENST00000301821 PRDM2Q13029 1718 aa19.48■□□□□ 0.71
RPSA-201ENST00000301821 ZNF608Q9ULD9 1512 aaPredicted RBP19.42■□□□□ 0.7
RPSA-201ENST00000301821 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
RPSA-201ENST00000301821 ARHGEF11O15085 1522 aa19.38■□□□□ 0.69
RPSA-201ENST00000301821 TOPBP1Q92547 1522 aa19.33■□□□□ 0.68
RPSA-201ENST00000301821 EIF4G3O43432 1585 aaKnown RBP19.32■□□□□ 0.68
RPSA-201ENST00000301821 SENP3Q9H4L4 574 aaPredicted RBP19.32■□□□□ 0.68
RPSA-201ENST00000301821 CCDC88BA6NC98 1476 aa19.31■□□□□ 0.68
RPSA-201ENST00000301821 CHD1O14646 1710 aa19.25■□□□□ 0.67
RPSA-201ENST00000301821 DNMBPQ6XZF7 1577 aa19.24■□□□□ 0.67
RPSA-201ENST00000301821 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
RPSA-201ENST00000301821 CYB5RLQ6IPT4 315 aa19.22■□□□□ 0.67
RPSA-201ENST00000301821 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.66not detected■■■■■ 29.8
RPSA-201ENST00000301821 TARBP1Q13395 1621 aaKnown RBP19.18■□□□□ 0.66
RPSA-201ENST00000301821 ARAP1Q96P48 1450 aa19.16■□□□□ 0.66
RPSA-201ENST00000301821 TRHP20396 242 aaPredicted RBP19.15■□□□□ 0.66
RPSA-201ENST00000301821 FBLN2P98095 1184 aa19.14■□□□□ 0.65
RPSA-201ENST00000301821 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
RPSA-201ENST00000301821 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
RPSA-201ENST00000301821 PHF23Q9BUL5 403 aaPredicted RBP19.03■□□□□ 0.64
RPSA-201ENST00000301821 TDRD9Q8NDG6 1382 aaKnown RBP19.02■□□□□ 0.64
RPSA-201ENST00000301821 SNAPC4Q5SXM2 1469 aa19.02■□□□□ 0.63
RPSA-201ENST00000301821 SOGA1O94964 1423 aa19■□□□□ 0.63
RPSA-201ENST00000301821 CLASP1Q7Z460 1538 aa18.99■□□□□ 0.63
RPSA-201ENST00000301821 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
RPSA-201ENST00000301821 SYNJ1O43426 1573 aa18.95■□□□□ 0.62
RPSA-201ENST00000301821 WDR97A6NE52 1622 aa18.95■□□□□ 0.62
RPSA-201ENST00000301821 MAGI1Q96QZ7 1491 aaPredicted RBP18.91■□□□□ 0.62
RPSA-201ENST00000301821 CHMP7Q8WUX9 453 aaPredicted RBP18.91■□□□□ 0.62
RPSA-201ENST00000301821 CUX1P39880 1505 aa18.89■□□□□ 0.61
RPSA-201ENST00000301821 GRIN2BQ13224 1484 aa18.88■□□□□ 0.61
RPSA-201ENST00000301821 SYNJ2O15056 1496 aa18.86■□□□□ 0.61
RPSA-201ENST00000301821 PBRM1Q86U86 1689 aa18.84■□□□□ 0.61
RPSA-201ENST00000301821 GAPVD1Q14C86 1478 aa18.8■□□□□ 0.6
RPSA-201ENST00000301821 ABCA5Q8WWZ7 1642 aa18.74■□□□□ 0.59
RPSA-201ENST00000301821 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
RPSA-201ENST00000301821 ERCC6L2Q5T890 1561 aa18.69■□□□□ 0.58
RPSA-201ENST00000301821 GRIN2AQ12879 1464 aa18.65■□□□□ 0.58
RPSA-201ENST00000301821 ADAMTS12P58397 1594 aa18.64■□□□□ 0.57
RPSA-201ENST00000301821 CEP170Q5SW79 1584 aa18.62■□□□□ 0.57
RPSA-201ENST00000301821 NUP160Q12769 1436 aa18.58■□□□□ 0.57
RPSA-201ENST00000301821 SHROOM2Q13796 1616 aa18.56■□□□□ 0.56
RPSA-201ENST00000301821 WRNQ14191 1432 aaPredicted RBP eCLIP18.55■□□□□ 0.56not detected■■■■■ 33.4
RPSA-201ENST00000301821 FHAD1B1AJZ9 1412 aa18.51■□□□□ 0.55
RPSA-201ENST00000301821 BIVM-ERCC5R4GMW8 1640 aa18.5■□□□□ 0.55
RPSA-201ENST00000301821 KIF13AQ9H1H9 1805 aa18.5■□□□□ 0.55
RPSA-201ENST00000301821 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
RPSA-201ENST00000301821 ERICH3Q5RHP9 1530 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms