RNA–Protein interactions for RNA: ENST00000297661.8

UBAP1-201, Transcript of ubiquitin associated protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBAP1, Length 2,735 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBAP1-201ENST00000297661 NISCHQ9Y2I1 1504 aa32.41■■■□□ 2.78
UBAP1-201ENST00000297661 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
UBAP1-201ENST00000297661 ABCC9O60706 1549 aa27.9■■■□□ 2.06
UBAP1-201ENST00000297661 DCAF8L2P0C7V8 631 aa27.48■■□□□ 1.99
UBAP1-201ENST00000297661 SHROOM4Q9ULL8 1493 aa27.45■■□□□ 1.98
UBAP1-201ENST00000297661 ZCCHC6Q5VYS8 1495 aaKnown RBP27.05■■□□□ 1.92
UBAP1-201ENST00000297661 SUPT5HO00267 1087 aaKnown RBP26.92■■□□□ 1.9
UBAP1-201ENST00000297661 NACADO15069 1562 aa26.67■■□□□ 1.86
UBAP1-201ENST00000297661 RB1CC1Q8TDY2 1594 aa26.67■■□□□ 1.86
UBAP1-201ENST00000297661 DCAF1Q9Y4B6 1507 aa26.56■■□□□ 1.84
UBAP1-201ENST00000297661 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
UBAP1-201ENST00000297661 SCRIBQ14160 1630 aa26.35■■□□□ 1.81
UBAP1-201ENST00000297661 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
UBAP1-201ENST00000297661 UNC13AQ9UPW8 1703 aa26.2■■□□□ 1.78
UBAP1-201ENST00000297661 CHIC1Q5VXU3 224 aa26.02■■□□□ 1.76
UBAP1-201ENST00000297661 HRCP23327 699 aa26■■□□□ 1.75
UBAP1-201ENST00000297661 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.74
UBAP1-201ENST00000297661 PPARGC1BQ86YN6 1023 aaKnown RBP25.43■■□□□ 1.66
UBAP1-201ENST00000297661 LOC105371045A0A1W2PR82 267 aa25.43■■□□□ 1.66
UBAP1-201ENST00000297661 PCGF6Q9BYE7 350 aa25.43■■□□□ 1.66
UBAP1-201ENST00000297661 CECR2Q9BXF3 1484 aa25.42■■□□□ 1.66
UBAP1-201ENST00000297661 DNAJC5BQ9UF47 199 aa25.36■■□□□ 1.65
UBAP1-201ENST00000297661 EIF4G1Q04637 1599 aaKnown RBP25.24■■□□□ 1.63
UBAP1-201ENST00000297661 PELP1Q8IZL8 1130 aaKnown RBP25.16■■□□□ 1.62
UBAP1-201ENST00000297661 RSF1Q96T23 1441 aaPredicted RBP25.16■■□□□ 1.62
UBAP1-201ENST00000297661 MROH2BQ7Z745 1585 aa25.12■■□□□ 1.61
UBAP1-201ENST00000297661 CC2D2AQ9P2K1 1620 aa25.09■■□□□ 1.61
UBAP1-201ENST00000297661 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
UBAP1-201ENST00000297661 BAZ1AQ9NRL2 1556 aaPredicted RBP25.03■■□□□ 1.6
UBAP1-201ENST00000297661 FAM9AQ8IZU1 332 aaPredicted RBP24.94■■□□□ 1.58
UBAP1-201ENST00000297661 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
UBAP1-201ENST00000297661 WIZO95785 1651 aa24.9■■□□□ 1.58
UBAP1-201ENST00000297661 EHMT2Q96KQ7 1210 aa24.9■■□□□ 1.58
UBAP1-201ENST00000297661 ATAD2BQ9ULI0 1458 aa24.86■■□□□ 1.57
UBAP1-201ENST00000297661 TRIM26Q12899 539 aaPredicted RBP24.72■■□□□ 1.55
UBAP1-201ENST00000297661 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
UBAP1-201ENST00000297661 BAZ1BQ9UIG0 1483 aaKnown RBP24.7■■□□□ 1.54
UBAP1-201ENST00000297661 NCAPD3P42695 1498 aa24.67■■□□□ 1.54
UBAP1-201ENST00000297661 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
UBAP1-201ENST00000297661 SCAF1Q9H7N4 1312 aaKnown RBP24.62■■□□□ 1.53
UBAP1-201ENST00000297661 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
UBAP1-201ENST00000297661 TOP2AP11388 1531 aaKnown RBP24.46■■□□□ 1.51
UBAP1-201ENST00000297661 ZEB1P37275 1124 aaPredicted RBP24.43■■□□□ 1.5
UBAP1-201ENST00000297661 CCDC88BA6NC98 1476 aa24.32■■□□□ 1.48
UBAP1-201ENST00000297661 NESP48681 1621 aa24.28■■□□□ 1.48
UBAP1-201ENST00000297661 MYT1Q01538 1121 aa24.19■■□□□ 1.46
UBAP1-201ENST00000297661 ABCC8Q09428 1581 aa24.15■■□□□ 1.46
UBAP1-201ENST00000297661 CADPSQ9ULU8 1353 aa24.08■■□□□ 1.45
UBAP1-201ENST00000297661 TTBK1Q5TCY1 1321 aaPredicted RBP24.07■■□□□ 1.44
UBAP1-201ENST00000297661 ACIN1Q9UKV3 1341 aaKnown RBP24.01■■□□□ 1.43
UBAP1-201ENST00000297661 CFTRP13569 1480 aa23.97■■□□□ 1.43
UBAP1-201ENST00000297661 SOGA1O94964 1423 aa23.94■■□□□ 1.42
UBAP1-201ENST00000297661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.93■■□□□ 1.42
UBAP1-201ENST00000297661 NEUROD1Q13562 356 aa23.93■■□□□ 1.42
UBAP1-201ENST00000297661 ERCC6Q03468 1493 aa23.93■■□□□ 1.42
UBAP1-201ENST00000297661 LAMC3Q9Y6N6 1575 aa23.92■■□□□ 1.42
UBAP1-201ENST00000297661 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
UBAP1-201ENST00000297661 RUSC2Q8N2Y8 1516 aa23.85■■□□□ 1.41
UBAP1-201ENST00000297661 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
UBAP1-201ENST00000297661 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.41
UBAP1-201ENST00000297661 GTF3C3Q9Y5Q9 886 aa23.81■■□□□ 1.4
UBAP1-201ENST00000297661 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
UBAP1-201ENST00000297661 CCER1Q8TC90 406 aaPredicted RBP23.8■■□□□ 1.4
UBAP1-201ENST00000297661 CEP162Q5TB80 1403 aa23.79■■□□□ 1.4
UBAP1-201ENST00000297661 CSRNP3Q8WYN3 585 aa23.75■■□□□ 1.39
UBAP1-201ENST00000297661 CEP164Q9UPV0 1460 aa23.73■■□□□ 1.39
UBAP1-201ENST00000297661 CENPBP07199 599 aaPredicted RBP23.69■■□□□ 1.38
UBAP1-201ENST00000297661 PRDM2Q13029 1718 aa23.68■■□□□ 1.38
UBAP1-201ENST00000297661 TNIKQ9UKE5 1360 aa23.65■■□□□ 1.38
UBAP1-201ENST00000297661 WRNQ14191 1432 aaPredicted RBP eCLIP23.63■■□□□ 1.37
UBAP1-201ENST00000297661 URB2Q14146 1524 aaKnown RBP23.6■■□□□ 1.37
UBAP1-201ENST00000297661 MRC2Q9UBG0 1479 aa23.57■■□□□ 1.36
UBAP1-201ENST00000297661 DIEXFQ68CQ4 756 aaKnown RBP23.57■■□□□ 1.36
UBAP1-201ENST00000297661 THOC2Q8NI27 1593 aaKnown RBP23.56■■□□□ 1.36
UBAP1-201ENST00000297661 EEA1Q15075 1411 aa23.55■■□□□ 1.36
UBAP1-201ENST00000297661 RANGAP1P46060 587 aaPredicted RBP23.54■■□□□ 1.36
UBAP1-201ENST00000297661 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
UBAP1-201ENST00000297661 GOLGA3Q08378 1498 aa23.52■■□□□ 1.36
UBAP1-201ENST00000297661 CUX1P39880 1505 aa23.51■■□□□ 1.35
UBAP1-201ENST00000297661 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
UBAP1-201ENST00000297661 WDR62O43379 1518 aa23.43■■□□□ 1.34
UBAP1-201ENST00000297661 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
UBAP1-201ENST00000297661 RAD54L2Q9Y4B4 1467 aa23.39■■□□□ 1.33
UBAP1-201ENST00000297661 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
UBAP1-201ENST00000297661 HNRNPUL2Q1KMD3 747 aaKnown RBP23.37■■□□□ 1.33
UBAP1-201ENST00000297661 POLA1P09884 1462 aaPredicted RBP23.35■■□□□ 1.33
UBAP1-201ENST00000297661 CLIP1P30622 1438 aa23.33■■□□□ 1.33
UBAP1-201ENST00000297661 CUX2O14529 1486 aa23.32■■□□□ 1.32
UBAP1-201ENST00000297661 RAPGEF2Q9Y4G8 1499 aa23.31■■□□□ 1.32
UBAP1-201ENST00000297661 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
UBAP1-201ENST00000297661 KIF21BO75037 1637 aa23.26■■□□□ 1.31
UBAP1-201ENST00000297661 TDRD9Q8NDG6 1382 aaKnown RBP23.26■■□□□ 1.31
UBAP1-201ENST00000297661 ZNF608Q9ULD9 1512 aaPredicted RBP23.25■■□□□ 1.31
UBAP1-201ENST00000297661 BIVM-ERCC5R4GMW8 1640 aa23.24■■□□□ 1.31
UBAP1-201ENST00000297661 AQRO60306 1485 aaKnown RBP eCLIP23.2■■□□□ 1.33e-7■■■■□ 19.7
UBAP1-201ENST00000297661 APLP2Q06481 763 aa23.19■■□□□ 1.3
UBAP1-201ENST00000297661 YTHDC1Q96MU7 727 aaKnown RBP23.17■■□□□ 1.3
UBAP1-201ENST00000297661 VPS8Q8N3P4 1428 aa23.17■■□□□ 1.3
UBAP1-201ENST00000297661 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.3
UBAP1-201ENST00000297661 IFT140Q96RY7 1462 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms