RNA–Protein interactions for RNA: ENST00000291525.11

TFF3-201, Transcript of trefoil factor 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TFF3, Length 407 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3-201ENST00000291525 NISCHQ9Y2I1 1504 aa43.18■■■■■ 4.5
TFF3-201ENST00000291525 CCDC180Q9P1Z9 1646 aa38.77■■■■□ 3.8
TFF3-201ENST00000291525 ABCC9O60706 1549 aa38.48■■■■□ 3.75
TFF3-201ENST00000291525 RB1CC1Q8TDY2 1594 aa36.81■■■■□ 3.48
TFF3-201ENST00000291525 NACADO15069 1562 aa36.59■■■■□ 3.45
TFF3-201ENST00000291525 DCAF8L2P0C7V8 631 aa36.34■■■■□ 3.41
TFF3-201ENST00000291525 MYO15BQ96JP2 1530 aa36.14■■■■□ 3.38
TFF3-201ENST00000291525 UNC13AQ9UPW8 1703 aa35.93■■■■□ 3.34
TFF3-201ENST00000291525 ZCCHC6Q5VYS8 1495 aaKnown RBP35.84■■■■□ 3.33
TFF3-201ENST00000291525 DNAJC5BQ9UF47 199 aa35.83■■■■□ 3.33
TFF3-201ENST00000291525 PABPN1Q86U42 306 aaKnown RBP eCLIP35.8■■■■□ 3.32
TFF3-201ENST00000291525 DCAF1Q9Y4B6 1507 aa35.73■■■■□ 3.31
TFF3-201ENST00000291525 BICRAQ9NZM4 1560 aa35.63■■■■□ 3.29
TFF3-201ENST00000291525 SHROOM4Q9ULL8 1493 aa35.31■■■■□ 3.24
TFF3-201ENST00000291525 SCRIBQ14160 1630 aa35.26■■■■□ 3.24
TFF3-201ENST00000291525 CC2D2AQ9P2K1 1620 aa34.81■■■■□ 3.16
TFF3-201ENST00000291525 EIF4G1Q04637 1599 aaKnown RBP34.79■■■■□ 3.16
TFF3-201ENST00000291525 CECR2Q9BXF3 1484 aa34.68■■■■□ 3.14
TFF3-201ENST00000291525 NCAPD3P42695 1498 aa33.72■■■□□ 2.99
TFF3-201ENST00000291525 SMARCA4P51532 1647 aa33.67■■■□□ 2.98
TFF3-201ENST00000291525 ATAD2BQ9ULI0 1458 aa33.63■■■□□ 2.97
TFF3-201ENST00000291525 SMARCA2P51531 1590 aa33.62■■■□□ 2.97
TFF3-201ENST00000291525 BAZ1AQ9NRL2 1556 aaPredicted RBP33.56■■■□□ 2.96
TFF3-201ENST00000291525 HMGXB3Q12766 1538 aa33.53■■■□□ 2.96
TFF3-201ENST00000291525 BAZ1BQ9UIG0 1483 aaKnown RBP33.36■■■□□ 2.93
TFF3-201ENST00000291525 PEG3Q9GZU2 1588 aa33.35■■■□□ 2.93
TFF3-201ENST00000291525 ERCC6Q03468 1493 aa33.29■■■□□ 2.92
TFF3-201ENST00000291525 MROH2BQ7Z745 1585 aa33.23■■■□□ 2.91
TFF3-201ENST00000291525 CUX2O14529 1486 aa33.18■■■□□ 2.9
TFF3-201ENST00000291525 NESP48681 1621 aa33.08■■■□□ 2.89
TFF3-201ENST00000291525 LAMC3Q9Y6N6 1575 aa32.99■■■□□ 2.87
TFF3-201ENST00000291525 DNAJC5Q9H3Z4 198 aa32.88■■■□□ 2.85
TFF3-201ENST00000291525 WIZO95785 1651 aa32.87■■■□□ 2.85
TFF3-201ENST00000291525 THOC2Q8NI27 1593 aaKnown RBP32.79■■■□□ 2.84
TFF3-201ENST00000291525 PDS5BQ9NTI5 1447 aa32.78■■■□□ 2.84
TFF3-201ENST00000291525 KIF21AQ7Z4S6 1674 aa32.73■■■□□ 2.83
TFF3-201ENST00000291525 CADPSQ9ULU8 1353 aa32.7■■■□□ 2.83
TFF3-201ENST00000291525 RSF1Q96T23 1441 aaPredicted RBP32.6■■■□□ 2.81
TFF3-201ENST00000291525 TOP2AP11388 1531 aaKnown RBP32.51■■■□□ 2.8
TFF3-201ENST00000291525 MRC2Q9UBG0 1479 aa32.48■■■□□ 2.79
TFF3-201ENST00000291525 CEP164Q9UPV0 1460 aa32.4■■■□□ 2.78
TFF3-201ENST00000291525 WDR62O43379 1518 aa32.38■■■□□ 2.77
TFF3-201ENST00000291525 CFTRP13569 1480 aa32.36■■■□□ 2.77
TFF3-201ENST00000291525 FANCD2Q9BXW9 1451 aa32.35■■■□□ 2.77
TFF3-201ENST00000291525 PRDM2Q13029 1718 aa32.17■■■□□ 2.74
TFF3-201ENST00000291525 CCDC88BA6NC98 1476 aa32.08■■■□□ 2.73
TFF3-201ENST00000291525 URB2Q14146 1524 aaKnown RBP32.03■■■□□ 2.72
TFF3-201ENST00000291525 ABCC8Q09428 1581 aa31.77■■■□□ 2.68
TFF3-201ENST00000291525 TOPBP1Q92547 1522 aa31.75■■■□□ 2.67
TFF3-201ENST00000291525 IFT140Q96RY7 1462 aa31.74■■■□□ 2.67
TFF3-201ENST00000291525 DNMBPQ6XZF7 1577 aa31.68■■■□□ 2.66
TFF3-201ENST00000291525 OSCARQ8IYS5 282 aa31.65■■■□□ 2.66
TFF3-201ENST00000291525 ZNF608Q9ULD9 1512 aaPredicted RBP31.58■■■□□ 2.65
TFF3-201ENST00000291525 TRIM41Q8WV44 630 aa31.52■■■□□ 2.64
TFF3-201ENST00000291525 EIF4G3O43432 1585 aaKnown RBP31.49■■■□□ 2.63
TFF3-201ENST00000291525 TARBP1Q13395 1621 aaKnown RBP31.44■■■□□ 2.62
TFF3-201ENST00000291525 POLA1P09884 1462 aaPredicted RBP31.42■■■□□ 2.62
TFF3-201ENST00000291525 AQRO60306 1485 aaKnown RBP eCLIP31.33■■■□□ 2.61
TFF3-201ENST00000291525 SUPT5HO00267 1087 aaKnown RBP31.28■■■□□ 2.6
TFF3-201ENST00000291525 SOGA1O94964 1423 aa31.28■■■□□ 2.6
TFF3-201ENST00000291525 RAD54L2Q9Y4B4 1467 aa31.27■■■□□ 2.6
TFF3-201ENST00000291525 FGD5Q6ZNL6 1462 aa31.26■■■□□ 2.59
TFF3-201ENST00000291525 WDR97A6NE52 1622 aa31.25■■■□□ 2.59
TFF3-201ENST00000291525 CHD1O14646 1710 aa31.24■■■□□ 2.59
TFF3-201ENST00000291525 CUX1P39880 1505 aa31.24■■■□□ 2.59
TFF3-201ENST00000291525 RIMBP3CA6NJZ7 1639 aa31.23■■■□□ 2.59
TFF3-201ENST00000291525 RIMBP3BA6NNM3 1639 aa31.23■■■□□ 2.59
TFF3-201ENST00000291525 RIMBP3Q9UFD9 1639 aa31.23■■■□□ 2.59
TFF3-201ENST00000291525 TDRD9Q8NDG6 1382 aaKnown RBP31.16■■■□□ 2.58
TFF3-201ENST00000291525 ARHGEF11O15085 1522 aa31.14■■■□□ 2.58
TFF3-201ENST00000291525 FBLN2P98095 1184 aa31.12■■■□□ 2.57
TFF3-201ENST00000291525 SNAPC4Q5SXM2 1469 aa31.06■■■□□ 2.56
TFF3-201ENST00000291525 MAGI1Q96QZ7 1491 aaPredicted RBP31.03■■■□□ 2.56
TFF3-201ENST00000291525 GRIN2BQ13224 1484 aa31.02■■■□□ 2.56
TFF3-201ENST00000291525 PBRM1Q86U86 1689 aa30.95■■■□□ 2.55
TFF3-201ENST00000291525 CHMP7Q8WUX9 453 aaPredicted RBP30.94■■■□□ 2.54
TFF3-201ENST00000291525 GAPVD1Q14C86 1478 aa30.93■■■□□ 2.54
TFF3-201ENST00000291525 ABCA10Q8WWZ4 1543 aa30.93■■■□□ 2.54
TFF3-201ENST00000291525 SYNJ1O43426 1573 aa30.92■■■□□ 2.54
TFF3-201ENST00000291525 SYNJ2O15056 1496 aa30.9■■■□□ 2.54
TFF3-201ENST00000291525 ABCA5Q8WWZ7 1642 aa30.87■■■□□ 2.53
TFF3-201ENST00000291525 CYB5RLQ6IPT4 315 aa30.86■■■□□ 2.53
TFF3-201ENST00000291525 CLASP1Q7Z460 1538 aa30.86■■■□□ 2.53
TFF3-201ENST00000291525 WRNQ14191 1432 aaPredicted RBP eCLIP30.85■■■□□ 2.53
TFF3-201ENST00000291525 BIVM-ERCC5R4GMW8 1640 aa30.84■■■□□ 2.53
TFF3-201ENST00000291525 TOP2BQ02880 1626 aa30.83■■■□□ 2.53
TFF3-201ENST00000291525 ARAP1Q96P48 1450 aa30.82■■■□□ 2.53
TFF3-201ENST00000291525 ADAMTS12P58397 1594 aa30.64■■■□□ 2.5
TFF3-201ENST00000291525 GRIN2AQ12879 1464 aa30.62■■■□□ 2.49
TFF3-201ENST00000291525 ERICH3Q5RHP9 1530 aa30.57■■■□□ 2.49
TFF3-201ENST00000291525 FHAD1B1AJZ9 1412 aa30.56■■■□□ 2.48
TFF3-201ENST00000291525 TRHP20396 242 aaPredicted RBP30.5■■■□□ 2.47
TFF3-201ENST00000291525 NUP160Q12769 1436 aa30.49■■■□□ 2.47
TFF3-201ENST00000291525 CEP170Q5SW79 1584 aa30.47■■■□□ 2.47
TFF3-201ENST00000291525 SHROOM2Q13796 1616 aa30.36■■■□□ 2.45
TFF3-201ENST00000291525 ERCC6L2Q5T890 1561 aa30.32■■■□□ 2.44
TFF3-201ENST00000291525 KIF27Q86VH2 1401 aa30.24■■■□□ 2.43
TFF3-201ENST00000291525 RUSC2Q8N2Y8 1516 aa30.2■■■□□ 2.42
TFF3-201ENST00000291525 CUL7Q14999 1698 aa30.2■■■□□ 2.42
TFF3-201ENST00000291525 PRG4Q92954 1404 aaPredicted RBP30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms