RNA–Protein interactions for RNA: ENST00000274065.8

RPS3A-201, Transcript of ribosomal protein S3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPS3A, Length 934 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3A-201ENST00000274065 AEBP2Q6ZN18 517 aaPredicted RBP26.89■■□□□ 1.9
RPS3A-201ENST00000274065 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
RPS3A-201ENST00000274065 SENP3Q9H4L4 574 aaPredicted RBP22.94■■□□□ 1.26
RPS3A-201ENST00000274065 PHF23Q9BUL5 403 aaPredicted RBP22.62■■□□□ 1.21
RPS3A-201ENST00000274065 NISCHQ9Y2I1 1504 aa21.54■■□□□ 1.04
RPS3A-201ENST00000274065 FOXD1Q16676 465 aa21.35■■□□□ 1.01
RPS3A-201ENST00000274065 PLPPR3Q6T4P5 718 aa20.53■□□□□ 0.88
RPS3A-201ENST00000274065 ABCC9O60706 1549 aa20.03■□□□□ 0.8
RPS3A-201ENST00000274065 PPP6R1Q9UPN7 881 aa20.02■□□□□ 0.8
RPS3A-201ENST00000274065 MSH5O43196 834 aa19.97■□□□□ 0.79
RPS3A-201ENST00000274065 ADRA2BP18089 450 aa19.94■□□□□ 0.78
RPS3A-201ENST00000274065 PIAS4Q8N2W9 510 aaPredicted RBP19.94■□□□□ 0.78
RPS3A-201ENST00000274065 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
RPS3A-201ENST00000274065 POTEDQ86YR6 584 aa19.3■□□□□ 0.68
RPS3A-201ENST00000274065 DNAJC5BQ9UF47 199 aa19.27■□□□□ 0.68
RPS3A-201ENST00000274065 RB1CC1Q8TDY2 1594 aa18.77■□□□□ 0.6
RPS3A-201ENST00000274065 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
RPS3A-201ENST00000274065 NACADO15069 1562 aa18.54■□□□□ 0.56
RPS3A-201ENST00000274065 DCAF8L2P0C7V8 631 aa18.43■□□□□ 0.54
RPS3A-201ENST00000274065 UNC13AQ9UPW8 1703 aa18.32■□□□□ 0.52
RPS3A-201ENST00000274065 BICRAQ9NZM4 1560 aa18.3■□□□□ 0.52
RPS3A-201ENST00000274065 SCAF1Q9H7N4 1312 aaKnown RBP18.28■□□□□ 0.52
RPS3A-201ENST00000274065 MAPK8IP2Q13387 824 aaPredicted RBP18.27■□□□□ 0.52
RPS3A-201ENST00000274065 DMRT2Q9Y5R5 561 aa18.22■□□□□ 0.51
RPS3A-201ENST00000274065 MYO15BQ96JP2 1530 aa18.12■□□□□ 0.49
RPS3A-201ENST00000274065 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
RPS3A-201ENST00000274065 CC2D2AQ9P2K1 1620 aa18.02■□□□□ 0.48
RPS3A-201ENST00000274065 DNAJC5Q9H3Z4 198 aa17.99■□□□□ 0.47
RPS3A-201ENST00000274065 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
RPS3A-201ENST00000274065 SHROOM4Q9ULL8 1493 aa17.93■□□□□ 0.46
RPS3A-201ENST00000274065 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
RPS3A-201ENST00000274065 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
RPS3A-201ENST00000274065 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
RPS3A-201ENST00000274065 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
RPS3A-201ENST00000274065 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
RPS3A-201ENST00000274065 HOXD11P31277 338 aaPredicted RBP17.6■□□□□ 0.41
RPS3A-201ENST00000274065 RNF216Q9NWF9 866 aaPredicted RBP17.48■□□□□ 0.39
RPS3A-201ENST00000274065 CUX2O14529 1486 aa17.41■□□□□ 0.38
RPS3A-201ENST00000274065 DCAF8L1A6NGE4 600 aa17.34■□□□□ 0.37
RPS3A-201ENST00000274065 NCBP3Q53F19 620 aaKnown RBP17.34■□□□□ 0.37
RPS3A-201ENST00000274065 ERCC6Q03468 1493 aa17.3■□□□□ 0.36
RPS3A-201ENST00000274065 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
RPS3A-201ENST00000274065 NESP48681 1621 aa17.08■□□□□ 0.32
RPS3A-201ENST00000274065 NPM3O75607 178 aaKnown RBP17.08■□□□□ 0.32
RPS3A-201ENST00000274065 ATAD2BQ9ULI0 1458 aa17.06■□□□□ 0.32
RPS3A-201ENST00000274065 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
RPS3A-201ENST00000274065 TRIM41Q8WV44 630 aa17.03■□□□□ 0.32
RPS3A-201ENST00000274065 CACNB1Q02641 598 aaPredicted RBP17.01■□□□□ 0.31
RPS3A-201ENST00000274065 HMGXB3Q12766 1538 aa16.96■□□□□ 0.3
RPS3A-201ENST00000274065 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
RPS3A-201ENST00000274065 SMARCA2P51531 1590 aa16.93■□□□□ 0.3
RPS3A-201ENST00000274065 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
RPS3A-201ENST00000274065 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
RPS3A-201ENST00000274065 KCNA4P22459 653 aa16.82■□□□□ 0.28
RPS3A-201ENST00000274065 C1QBPQ07021 282 aaKnown RBP16.81■□□□□ 0.28
RPS3A-201ENST00000274065 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
RPS3A-201ENST00000274065 KIF21AQ7Z4S6 1674 aa16.76■□□□□ 0.27
RPS3A-201ENST00000274065 PDS5BQ9NTI5 1447 aa16.75■□□□□ 0.27
RPS3A-201ENST00000274065 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
RPS3A-201ENST00000274065 PEG3Q9GZU2 1588 aa16.71■□□□□ 0.27
RPS3A-201ENST00000274065 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.69■□□□□ 0.265e-8■■□□□ 14.3
RPS3A-201ENST00000274065 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
RPS3A-201ENST00000274065 CADPSQ9ULU8 1353 aa16.63■□□□□ 0.25
RPS3A-201ENST00000274065 WDR62O43379 1518 aa16.61■□□□□ 0.25
RPS3A-201ENST00000274065 MROH2BQ7Z745 1585 aa16.61■□□□□ 0.25
RPS3A-201ENST00000274065 OSCARQ8IYS5 282 aa16.56■□□□□ 0.24
RPS3A-201ENST00000274065 CEP164Q9UPV0 1460 aa16.48■□□□□ 0.23
RPS3A-201ENST00000274065 FANCD2Q9BXW9 1451 aa16.44■□□□□ 0.22
RPS3A-201ENST00000274065 U3KPZ7 1027 aaPredicted RBP16.39■□□□□ 0.21
RPS3A-201ENST00000274065 RIMBP3CA6NJZ7 1639 aa16.37■□□□□ 0.21
RPS3A-201ENST00000274065 RIMBP3BA6NNM3 1639 aa16.37■□□□□ 0.21
RPS3A-201ENST00000274065 RIMBP3Q9UFD9 1639 aa16.37■□□□□ 0.21
RPS3A-201ENST00000274065 WIZO95785 1651 aa16.36■□□□□ 0.21
RPS3A-201ENST00000274065 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
RPS3A-201ENST00000274065 CFTRP13569 1480 aa16.34■□□□□ 0.21
RPS3A-201ENST00000274065 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
RPS3A-201ENST00000274065 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
RPS3A-201ENST00000274065 CYB5RLQ6IPT4 315 aa16.24■□□□□ 0.19
RPS3A-201ENST00000274065 ZNF608Q9ULD9 1512 aaPredicted RBP16.24■□□□□ 0.19
RPS3A-201ENST00000274065 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
RPS3A-201ENST00000274065 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
RPS3A-201ENST00000274065 ARAP1Q96P48 1450 aa16.12■□□□□ 0.17
RPS3A-201ENST00000274065 TOP2AP11388 1531 aaKnown RBP16.11■□□□□ 0.17
RPS3A-201ENST00000274065 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
RPS3A-201ENST00000274065 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
RPS3A-201ENST00000274065 TOPBP1Q92547 1522 aa16.07■□□□□ 0.16
RPS3A-201ENST00000274065 EIF4G3O43432 1585 aaKnown RBP16.06■□□□□ 0.16
RPS3A-201ENST00000274065 CAPN15O75808 1086 aa16.04■□□□□ 0.16
RPS3A-201ENST00000274065 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.162e-9■■■■■ 47.7
RPS3A-201ENST00000274065 FBLN2P98095 1184 aa16.02■□□□□ 0.16
RPS3A-201ENST00000274065 CHD1O14646 1710 aa16■□□□□ 0.15
RPS3A-201ENST00000274065 PRDM2Q13029 1718 aa16■□□□□ 0.15
RPS3A-201ENST00000274065 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.98■□□□□ 0.15
RPS3A-201ENST00000274065 DSG3P32926 999 aa15.98■□□□□ 0.15
RPS3A-201ENST00000274065 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
RPS3A-201ENST00000274065 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
RPS3A-201ENST00000274065 APLP2Q06481 763 aa15.96■□□□□ 0.15
RPS3A-201ENST00000274065 ABCC8Q09428 1581 aa15.95■□□□□ 0.14
RPS3A-201ENST00000274065 TARBP1Q13395 1621 aaKnown RBP15.94■□□□□ 0.14
RPS3A-201ENST00000274065 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms