RNA–Protein interactions for RNA: ENST00000268896.9

PCTP-201, Transcript of phosphatidylcholine transfer protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCTP, Length 2,044 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCTP-201ENST00000268896 NISCHQ9Y2I1 1504 aa36.72■■■■□ 3.47
PCTP-201ENST00000268896 CCDC180Q9P1Z9 1646 aa31.99■■■□□ 2.71
PCTP-201ENST00000268896 ZCCHC6Q5VYS8 1495 aaKnown RBP30.81■■■□□ 2.52
PCTP-201ENST00000268896 DCAF8L2P0C7V8 631 aa30.63■■■□□ 2.49
PCTP-201ENST00000268896 ABCC9O60706 1549 aa30.58■■■□□ 2.49
PCTP-201ENST00000268896 DCAF1Q9Y4B6 1507 aa30.23■■■□□ 2.43
PCTP-201ENST00000268896 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
PCTP-201ENST00000268896 MYO15BQ96JP2 1530 aa29.88■■■□□ 2.37
PCTP-201ENST00000268896 NACADO15069 1562 aa29.85■■■□□ 2.37
PCTP-201ENST00000268896 RB1CC1Q8TDY2 1594 aa29.66■■■□□ 2.34
PCTP-201ENST00000268896 SCRIBQ14160 1630 aa29.6■■■□□ 2.33
PCTP-201ENST00000268896 UNC13AQ9UPW8 1703 aa29.12■■■□□ 2.25
PCTP-201ENST00000268896 SUPT5HO00267 1087 aaKnown RBP28.9■■■□□ 2.22
PCTP-201ENST00000268896 PABPN1Q86U42 306 aaKnown RBP eCLIP28.88■■■□□ 2.21
PCTP-201ENST00000268896 BICRAQ9NZM4 1560 aa28.8■■■□□ 2.2
PCTP-201ENST00000268896 CECR2Q9BXF3 1484 aa28.63■■■□□ 2.17
PCTP-201ENST00000268896 RSF1Q96T23 1441 aaPredicted RBP28.47■■■□□ 2.15
PCTP-201ENST00000268896 MROH2BQ7Z745 1585 aa28.43■■■□□ 2.14
PCTP-201ENST00000268896 BAZ1AQ9NRL2 1556 aaPredicted RBP28.34■■■□□ 2.13
PCTP-201ENST00000268896 SMARCA4P51532 1647 aa28.27■■■□□ 2.12
PCTP-201ENST00000268896 WIZO95785 1651 aa28.22■■■□□ 2.11
PCTP-201ENST00000268896 EIF4G1Q04637 1599 aaKnown RBP27.96■■■□□ 2.07
PCTP-201ENST00000268896 ATAD2BQ9ULI0 1458 aa27.84■■■□□ 2.05
PCTP-201ENST00000268896 TOP2AP11388 1531 aaKnown RBP27.84■■■□□ 2.05
PCTP-201ENST00000268896 PEG3Q9GZU2 1588 aa27.83■■■□□ 2.05
PCTP-201ENST00000268896 SMARCA2P51531 1590 aa27.77■■■□□ 2.04
PCTP-201ENST00000268896 BAZ1BQ9UIG0 1483 aaKnown RBP27.7■■■□□ 2.02
PCTP-201ENST00000268896 CC2D2AQ9P2K1 1620 aa27.6■■■□□ 2.01
PCTP-201ENST00000268896 CCDC88BA6NC98 1476 aa27.6■■■□□ 2.01
PCTP-201ENST00000268896 NCAPD3P42695 1498 aa27.56■■■□□ 2
PCTP-201ENST00000268896 HMGXB3Q12766 1538 aa27.5■■□□□ 1.99
PCTP-201ENST00000268896 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
PCTP-201ENST00000268896 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
PCTP-201ENST00000268896 TRIM41Q8WV44 630 aa27.09■■□□□ 1.93
PCTP-201ENST00000268896 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
PCTP-201ENST00000268896 CFTRP13569 1480 aa26.94■■□□□ 1.9
PCTP-201ENST00000268896 CADPSQ9ULU8 1353 aa26.9■■□□□ 1.9
PCTP-201ENST00000268896 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
PCTP-201ENST00000268896 NESP48681 1621 aa26.81■■□□□ 1.88
PCTP-201ENST00000268896 PRDM2Q13029 1718 aa26.77■■□□□ 1.88
PCTP-201ENST00000268896 FAM9AQ8IZU1 332 aaPredicted RBP26.73■■□□□ 1.87
PCTP-201ENST00000268896 SYNJ1O43426 1573 aa26.73■■□□□ 1.87
PCTP-201ENST00000268896 LAMC3Q9Y6N6 1575 aa26.65■■□□□ 1.86
PCTP-201ENST00000268896 FANCD2Q9BXW9 1451 aa26.64■■□□□ 1.85
PCTP-201ENST00000268896 CUX1P39880 1505 aa26.57■■□□□ 1.84
PCTP-201ENST00000268896 TOP2BQ02880 1626 aa26.57■■□□□ 1.84
PCTP-201ENST00000268896 LOC105371045A0A1W2PR82 267 aa26.55■■□□□ 1.84
PCTP-201ENST00000268896 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
PCTP-201ENST00000268896 SOGA1O94964 1423 aa26.51■■□□□ 1.83
PCTP-201ENST00000268896 PDS5BQ9NTI5 1447 aa26.48■■□□□ 1.83
PCTP-201ENST00000268896 EHMT2Q96KQ7 1210 aa26.48■■□□□ 1.83
PCTP-201ENST00000268896 CEP164Q9UPV0 1460 aa26.47■■□□□ 1.83
PCTP-201ENST00000268896 KIF21AQ7Z4S6 1674 aa26.44■■□□□ 1.82
PCTP-201ENST00000268896 RUSC2Q8N2Y8 1516 aa26.44■■□□□ 1.82
PCTP-201ENST00000268896 DNMBPQ6XZF7 1577 aa26.33■■□□□ 1.81
PCTP-201ENST00000268896 TOPBP1Q92547 1522 aa26.32■■□□□ 1.8
PCTP-201ENST00000268896 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
PCTP-201ENST00000268896 URB2Q14146 1524 aaKnown RBP26.32■■□□□ 1.8
PCTP-201ENST00000268896 EEA1Q15075 1411 aa26.26■■□□□ 1.79
PCTP-201ENST00000268896 CSRNP3Q8WYN3 585 aa26.26■■□□□ 1.79
PCTP-201ENST00000268896 ERCC6Q03468 1493 aa26.22■■□□□ 1.79
PCTP-201ENST00000268896 POLA1P09884 1462 aaPredicted RBP26.2■■□□□ 1.78
PCTP-201ENST00000268896 RAD54L2Q9Y4B4 1467 aa26.18■■□□□ 1.78
PCTP-201ENST00000268896 MRC2Q9UBG0 1479 aa26.16■■□□□ 1.78
PCTP-201ENST00000268896 CUX2O14529 1486 aa26.15■■□□□ 1.78
PCTP-201ENST00000268896 KIF27Q86VH2 1401 aa26.13■■□□□ 1.77
PCTP-201ENST00000268896 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
PCTP-201ENST00000268896 WDR62O43379 1518 aa26■■□□□ 1.75
PCTP-201ENST00000268896 UBTFP17480 764 aaKnown RBP26■■□□□ 1.75
PCTP-201ENST00000268896 GOLGA3Q08378 1498 aa25.99■■□□□ 1.75
PCTP-201ENST00000268896 THOC2Q8NI27 1593 aaKnown RBP25.98■■□□□ 1.75
PCTP-201ENST00000268896 KIF21BO75037 1637 aa25.98■■□□□ 1.75
PCTP-201ENST00000268896 RAPGEF2Q9Y4G8 1499 aa25.96■■□□□ 1.75
PCTP-201ENST00000268896 WDR97A6NE52 1622 aa25.95■■□□□ 1.74
PCTP-201ENST00000268896 TDRD9Q8NDG6 1382 aaKnown RBP25.93■■□□□ 1.74
PCTP-201ENST00000268896 IGF1RP08069 1367 aa25.92■■□□□ 1.74
PCTP-201ENST00000268896 TARBP1Q13395 1621 aaKnown RBP25.91■■□□□ 1.74
PCTP-201ENST00000268896 PRXQ9BXM0 1461 aa25.9■■□□□ 1.74
PCTP-201ENST00000268896 TNIKQ9UKE5 1360 aa25.86■■□□□ 1.73
PCTP-201ENST00000268896 ABCA5Q8WWZ7 1642 aa25.82■■□□□ 1.72
PCTP-201ENST00000268896 GAPVD1Q14C86 1478 aa25.81■■□□□ 1.72
PCTP-201ENST00000268896 CARMIL1Q5VZK9 1371 aa25.81■■□□□ 1.72
PCTP-201ENST00000268896 ERICH3Q5RHP9 1530 aa25.8■■□□□ 1.72
PCTP-201ENST00000268896 IFT140Q96RY7 1462 aa25.8■■□□□ 1.72
PCTP-201ENST00000268896 AQRO60306 1485 aaKnown RBP eCLIP25.79■■□□□ 1.722e-6■□□□□ 9
PCTP-201ENST00000268896 CEP162Q5TB80 1403 aa25.77■■□□□ 1.72
PCTP-201ENST00000268896 ZNF608Q9ULD9 1512 aaPredicted RBP25.77■■□□□ 1.72
PCTP-201ENST00000268896 RANGAP1P46060 587 aaPredicted RBP25.77■■□□□ 1.72
PCTP-201ENST00000268896 PBRM1Q86U86 1689 aa25.68■■□□□ 1.7
PCTP-201ENST00000268896 CUL7Q14999 1698 aa25.68■■□□□ 1.7
PCTP-201ENST00000268896 EIF4G3O43432 1585 aaKnown RBP25.63■■□□□ 1.69
PCTP-201ENST00000268896 GRIN2BQ13224 1484 aa25.61■■□□□ 1.69
PCTP-201ENST00000268896 CLIP1P30622 1438 aa25.6■■□□□ 1.69
PCTP-201ENST00000268896 ADAMTS12P58397 1594 aa25.52■■□□□ 1.68
PCTP-201ENST00000268896 SNAPC4Q5SXM2 1469 aa25.51■■□□□ 1.68
PCTP-201ENST00000268896 FHAD1B1AJZ9 1412 aa25.5■■□□□ 1.67
PCTP-201ENST00000268896 CTTNBP2Q8WZ74 1663 aa25.42■■□□□ 1.66
PCTP-201ENST00000268896 PPARGC1BQ86YN6 1023 aaKnown RBP25.42■■□□□ 1.66
PCTP-201ENST00000268896 FBLN2P98095 1184 aa25.38■■□□□ 1.65
PCTP-201ENST00000268896 MAGI1Q96QZ7 1491 aaPredicted RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms