RNA–Protein interactions for RNA: ENST00000265038.9

ERCC8-201, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ERCC8, Length 2,017 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-201ENST00000265038 NISCHQ9Y2I1 1504 aa20.46■□□□□ 0.87
ERCC8-201ENST00000265038 CCDC180Q9P1Z9 1646 aa18.08■□□□□ 0.48
ERCC8-201ENST00000265038 ABCC9O60706 1549 aa17.82■□□□□ 0.44
ERCC8-201ENST00000265038 DCAF8L2P0C7V8 631 aa17.16■□□□□ 0.34
ERCC8-201ENST00000265038 RB1CC1Q8TDY2 1594 aa17.07■□□□□ 0.32
ERCC8-201ENST00000265038 NACADO15069 1562 aa17.06■□□□□ 0.32
ERCC8-201ENST00000265038 ZCCHC6Q5VYS8 1495 aaKnown RBP17.03■□□□□ 0.32
ERCC8-201ENST00000265038 MYO15BQ96JP2 1530 aa16.98■□□□□ 0.31
ERCC8-201ENST00000265038 DCAF1Q9Y4B6 1507 aa16.9■□□□□ 0.3
ERCC8-201ENST00000265038 PABPN1Q86U42 306 aaKnown RBP eCLIP16.71■□□□□ 0.27
ERCC8-201ENST00000265038 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
ERCC8-201ENST00000265038 BICRAQ9NZM4 1560 aa16.59■□□□□ 0.25
ERCC8-201ENST00000265038 SCRIBQ14160 1630 aa16.55■□□□□ 0.24
ERCC8-201ENST00000265038 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
ERCC8-201ENST00000265038 SHROOM4Q9ULL8 1493 aa16.39■□□□□ 0.21
ERCC8-201ENST00000265038 EIF4G1Q04637 1599 aaKnown RBP16.14■□□□□ 0.17
ERCC8-201ENST00000265038 CC2D2AQ9P2K1 1620 aa16.07■□□□□ 0.16
ERCC8-201ENST00000265038 CECR2Q9BXF3 1484 aa16.01■□□□□ 0.15
ERCC8-201ENST00000265038 SMARCA4P51532 1647 aa15.83■□□□□ 0.12
ERCC8-201ENST00000265038 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
ERCC8-201ENST00000265038 ATAD2BQ9ULI0 1458 aa15.81■□□□□ 0.12
ERCC8-201ENST00000265038 NCAPD3P42695 1498 aa15.81■□□□□ 0.12
ERCC8-201ENST00000265038 MROH2BQ7Z745 1585 aa15.78■□□□□ 0.12
ERCC8-201ENST00000265038 SMARCA2P51531 1590 aa15.73■□□□□ 0.11
ERCC8-201ENST00000265038 PEG3Q9GZU2 1588 aa15.69■□□□□ 0.1
ERCC8-201ENST00000265038 HMGXB3Q12766 1538 aa15.67■□□□□ 0.1
ERCC8-201ENST00000265038 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
ERCC8-201ENST00000265038 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
ERCC8-201ENST00000265038 WIZO95785 1651 aa15.56■□□□□ 0.08
ERCC8-201ENST00000265038 NESP48681 1621 aa15.42■□□□□ 0.06
ERCC8-201ENST00000265038 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
ERCC8-201ENST00000265038 CADPSQ9ULU8 1353 aa15.35■□□□□ 0.05
ERCC8-201ENST00000265038 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
ERCC8-201ENST00000265038 LAMC3Q9Y6N6 1575 aa15.32■□□□□ 0.04
ERCC8-201ENST00000265038 CCDC88BA6NC98 1476 aa15.27■□□□□ 0.04
ERCC8-201ENST00000265038 PDS5BQ9NTI5 1447 aa15.27■□□□□ 0.03
ERCC8-201ENST00000265038 SUPT5HO00267 1087 aaKnown RBP15.25■□□□□ 0.03
ERCC8-201ENST00000265038 CFTRP13569 1480 aa15.24■□□□□ 0.03
ERCC8-201ENST00000265038 CUX2O14529 1486 aa15.17■□□□□ 0.02
ERCC8-201ENST00000265038 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
ERCC8-201ENST00000265038 KIF21AQ7Z4S6 1674 aa15.13■□□□□ 0.01
ERCC8-201ENST00000265038 THOC2Q8NI27 1593 aaKnown RBP15.12■□□□□ 0.01
ERCC8-201ENST00000265038 CEP164Q9UPV0 1460 aa15.11■□□□□ 0.01
ERCC8-201ENST00000265038 MRC2Q9UBG0 1479 aa15.1■□□□□ 0.01
ERCC8-201ENST00000265038 WDR62O43379 1518 aa15.03■□□□□ -0
ERCC8-201ENST00000265038 URB2Q14146 1524 aaKnown RBP15.01□□□□□ -0.01
ERCC8-201ENST00000265038 PRDM2Q13029 1718 aa14.94□□□□□ -0.02
ERCC8-201ENST00000265038 TOPBP1Q92547 1522 aa14.9□□□□□ -0.02
ERCC8-201ENST00000265038 ABCC8Q09428 1581 aa14.88□□□□□ -0.03
ERCC8-201ENST00000265038 DNMBPQ6XZF7 1577 aa14.85□□□□□ -0.03
ERCC8-201ENST00000265038 CHIC1Q5VXU3 224 aa14.83□□□□□ -0.03
ERCC8-201ENST00000265038 AEBP2Q6ZN18 517 aaPredicted RBP14.82□□□□□ -0.04
ERCC8-201ENST00000265038 IFT140Q96RY7 1462 aa14.81□□□□□ -0.04
ERCC8-201ENST00000265038 CUX1P39880 1505 aa14.79□□□□□ -0.04
ERCC8-201ENST00000265038 DNAJC5Q9H3Z4 198 aa14.78□□□□□ -0.04
ERCC8-201ENST00000265038 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
ERCC8-201ENST00000265038 ZNF608Q9ULD9 1512 aaPredicted RBP14.77□□□□□ -0.04
ERCC8-201ENST00000265038 RAD54L2Q9Y4B4 1467 aa14.74□□□□□ -0.05
ERCC8-201ENST00000265038 SOGA1O94964 1423 aa14.74□□□□□ -0.05
ERCC8-201ENST00000265038 FGD5Q6ZNL6 1462 aa14.74□□□□□ -0.05
ERCC8-201ENST00000265038 WRNQ14191 1432 aaPredicted RBP eCLIP14.71□□□□□ -0.05
ERCC8-201ENST00000265038 TARBP1Q13395 1621 aaKnown RBP14.71□□□□□ -0.06
ERCC8-201ENST00000265038 AQRO60306 1485 aaKnown RBP eCLIP14.69□□□□□ -0.06
ERCC8-201ENST00000265038 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
ERCC8-201ENST00000265038 SYNJ1O43426 1573 aa14.63□□□□□ -0.07
ERCC8-201ENST00000265038 EIF4G3O43432 1585 aaKnown RBP14.63□□□□□ -0.07
ERCC8-201ENST00000265038 TOP2BQ02880 1626 aa14.62□□□□□ -0.07
ERCC8-201ENST00000265038 OSCARQ8IYS5 282 aa14.6□□□□□ -0.07
ERCC8-201ENST00000265038 ABCA10Q8WWZ4 1543 aa14.6□□□□□ -0.07
ERCC8-201ENST00000265038 BIVM-ERCC5R4GMW8 1640 aa14.59□□□□□ -0.07
ERCC8-201ENST00000265038 WDR97A6NE52 1622 aa14.55□□□□□ -0.08
ERCC8-201ENST00000265038 GRIN2BQ13224 1484 aa14.55□□□□□ -0.08
ERCC8-201ENST00000265038 GAPVD1Q14C86 1478 aa14.55□□□□□ -0.08
ERCC8-201ENST00000265038 SNAPC4Q5SXM2 1469 aa14.53□□□□□ -0.08
ERCC8-201ENST00000265038 FBLN2P98095 1184 aa14.53□□□□□ -0.08
ERCC8-201ENST00000265038 ABCA5Q8WWZ7 1642 aa14.49□□□□□ -0.09
ERCC8-201ENST00000265038 MAGI1Q96QZ7 1491 aaPredicted RBP14.49□□□□□ -0.09
ERCC8-201ENST00000265038 CHMP7Q8WUX9 453 aaPredicted RBP14.49□□□□□ -0.09
ERCC8-201ENST00000265038 SYNJ2O15056 1496 aa14.45□□□□□ -0.1
ERCC8-201ENST00000265038 PBRM1Q86U86 1689 aa14.41□□□□□ -0.1
ERCC8-201ENST00000265038 CHD1O14646 1710 aa14.4□□□□□ -0.1
ERCC8-201ENST00000265038 ERICH3Q5RHP9 1530 aa14.4□□□□□ -0.1
ERCC8-201ENST00000265038 FHAD1B1AJZ9 1412 aa14.39□□□□□ -0.11
ERCC8-201ENST00000265038 KIF27Q86VH2 1401 aa14.39□□□□□ -0.11
ERCC8-201ENST00000265038 IGF1RP08069 1367 aa14.39□□□□□ -0.11
ERCC8-201ENST00000265038 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
ERCC8-201ENST00000265038 ADAMTS12P58397 1594 aa14.36□□□□□ -0.11
ERCC8-201ENST00000265038 GRIN2AQ12879 1464 aa14.35□□□□□ -0.11
ERCC8-201ENST00000265038 CLASP1Q7Z460 1538 aa14.32□□□□□ -0.12
ERCC8-201ENST00000265038 NUP160Q12769 1436 aa14.31□□□□□ -0.12
ERCC8-201ENST00000265038 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
ERCC8-201ENST00000265038 RUSC2Q8N2Y8 1516 aa14.3□□□□□ -0.12
ERCC8-201ENST00000265038 CARMIL1Q5VZK9 1371 aa14.28□□□□□ -0.12
ERCC8-201ENST00000265038 RIMBP3CA6NJZ7 1639 aa14.28□□□□□ -0.12
ERCC8-201ENST00000265038 RIMBP3BA6NNM3 1639 aa14.28□□□□□ -0.12
ERCC8-201ENST00000265038 RIMBP3Q9UFD9 1639 aa14.28□□□□□ -0.12
ERCC8-201ENST00000265038 CEP170Q5SW79 1584 aa14.27□□□□□ -0.13
ERCC8-201ENST00000265038 CYB5RLQ6IPT4 315 aa14.24□□□□□ -0.13
ERCC8-201ENST00000265038 ARAP1Q96P48 1450 aa14.22□□□□□ -0.13
ERCC8-201ENST00000265038 CUL7Q14999 1698 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms