RNA–Protein interactions for RNA: ENST00000259006.7

LIMD2-201, Transcript of LIM domain containing 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD2, Length 3,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-201ENST00000259006 NISCHQ9Y2I1 1504 aa27■■□□□ 1.91
LIMD2-201ENST00000259006 SHROOM4Q9ULL8 1493 aa23.94■■□□□ 1.42
LIMD2-201ENST00000259006 SUPT5HO00267 1087 aaKnown RBP23.76■■□□□ 1.39
LIMD2-201ENST00000259006 PELP1Q8IZL8 1130 aaKnown RBP23.71■■□□□ 1.39
LIMD2-201ENST00000259006 DCAF8L2P0C7V8 631 aa23.39■■□□□ 1.33
LIMD2-201ENST00000259006 PCGF6Q9BYE7 350 aa23.14■■□□□ 1.29
LIMD2-201ENST00000259006 HRCP23327 699 aa23.11■■□□□ 1.29
LIMD2-201ENST00000259006 CCDC180Q9P1Z9 1646 aa23.06■■□□□ 1.28
LIMD2-201ENST00000259006 PPARGC1BQ86YN6 1023 aaKnown RBP23.06■■□□□ 1.28
LIMD2-201ENST00000259006 MYT1Q01538 1121 aa23.02■■□□□ 1.28
LIMD2-201ENST00000259006 MYO15BQ96JP2 1530 aa22.9■■□□□ 1.26
LIMD2-201ENST00000259006 CHIC1Q5VXU3 224 aa22.89■■□□□ 1.26
LIMD2-201ENST00000259006 LOC105371045A0A1W2PR82 267 aa22.65■■□□□ 1.22
LIMD2-201ENST00000259006 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
LIMD2-201ENST00000259006 ABCC9O60706 1549 aa22.59■■□□□ 1.21
LIMD2-201ENST00000259006 SCAF1Q9H7N4 1312 aaKnown RBP22.56■■□□□ 1.2
LIMD2-201ENST00000259006 EHMT2Q96KQ7 1210 aa22.3■■□□□ 1.16
LIMD2-201ENST00000259006 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
LIMD2-201ENST00000259006 FAM9AQ8IZU1 332 aaPredicted RBP22.11■■□□□ 1.13
LIMD2-201ENST00000259006 DCAF1Q9Y4B6 1507 aa21.99■■□□□ 1.11
LIMD2-201ENST00000259006 SCRIBQ14160 1630 aa21.88■■□□□ 1.09
LIMD2-201ENST00000259006 TTBK1Q5TCY1 1321 aaPredicted RBP21.81■■□□□ 1.08
LIMD2-201ENST00000259006 TRIM41Q8WV44 630 aa21.79■■□□□ 1.08
LIMD2-201ENST00000259006 BCL11AQ9H165 835 aa21.75■■□□□ 1.07
LIMD2-201ENST00000259006 PRKCSHP14314 528 aaPredicted RBP21.72■■□□□ 1.07
LIMD2-201ENST00000259006 ZEB1P37275 1124 aaPredicted RBP21.69■■□□□ 1.06
LIMD2-201ENST00000259006 NACADO15069 1562 aa21.65■■□□□ 1.06
LIMD2-201ENST00000259006 GTF3C3Q9Y5Q9 886 aa21.63■■□□□ 1.05
LIMD2-201ENST00000259006 PABPN1Q86U42 306 aaKnown RBP eCLIP21.63■■□□□ 1.05
LIMD2-201ENST00000259006 ACIN1Q9UKV3 1341 aaKnown RBP21.6■■□□□ 1.05
LIMD2-201ENST00000259006 NEUROD1Q13562 356 aa21.6■■□□□ 1.05
LIMD2-201ENST00000259006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.57■■□□□ 1.04
LIMD2-201ENST00000259006 RB1CC1Q8TDY2 1594 aa21.55■■□□□ 1.04
LIMD2-201ENST00000259006 CCER1Q8TC90 406 aaPredicted RBP21.45■■□□□ 1.02
LIMD2-201ENST00000259006 CENPBP07199 599 aaPredicted RBP21.4■■□□□ 1.02
LIMD2-201ENST00000259006 CECR2Q9BXF3 1484 aa21.29■■□□□ 1
LIMD2-201ENST00000259006 RSF1Q96T23 1441 aaPredicted RBP21.28■■□□□ 1
LIMD2-201ENST00000259006 DIEXFQ68CQ4 756 aaKnown RBP21.22■□□□□ 0.99
LIMD2-201ENST00000259006 YTHDC1Q96MU7 727 aaKnown RBP21.2■□□□□ 0.98
LIMD2-201ENST00000259006 UNC13AQ9UPW8 1703 aa21.05■□□□□ 0.96
LIMD2-201ENST00000259006 MROH2BQ7Z745 1585 aa21.04■□□□□ 0.96
LIMD2-201ENST00000259006 ERICH6Q7L0X2 663 aa20.97■□□□□ 0.95
LIMD2-201ENST00000259006 ANP32EQ9BTT0 268 aa20.95■□□□□ 0.94
LIMD2-201ENST00000259006 BICRAQ9NZM4 1560 aa20.92■□□□□ 0.94
LIMD2-201ENST00000259006 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.94
LIMD2-201ENST00000259006 WIZO95785 1651 aa20.87■□□□□ 0.93
LIMD2-201ENST00000259006 UBTFP17480 764 aaKnown RBP20.83■□□□□ 0.93
LIMD2-201ENST00000259006 HNRNPUL2Q1KMD3 747 aaKnown RBP20.82■□□□□ 0.92
LIMD2-201ENST00000259006 RANGAP1P46060 587 aaPredicted RBP20.79■□□□□ 0.92
LIMD2-201ENST00000259006 BAZ1AQ9NRL2 1556 aaPredicted RBP20.79■□□□□ 0.92
LIMD2-201ENST00000259006 ZNF316A6NFI3 1004 aaPredicted RBP20.77■□□□□ 0.91
LIMD2-201ENST00000259006 MIER1Q8N108 512 aa20.75■□□□□ 0.91
LIMD2-201ENST00000259006 APLP2Q06481 763 aa20.75■□□□□ 0.91
LIMD2-201ENST00000259006 SMARCA4P51532 1647 aa20.68■□□□□ 0.9
LIMD2-201ENST00000259006 ABCC8Q09428 1581 aa20.6■□□□□ 0.89
LIMD2-201ENST00000259006 CEP162Q5TB80 1403 aa20.6■□□□□ 0.89
LIMD2-201ENST00000259006 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.88
LIMD2-201ENST00000259006 SOGA1O94964 1423 aa20.57■□□□□ 0.88
LIMD2-201ENST00000259006 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
LIMD2-201ENST00000259006 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
LIMD2-201ENST00000259006 TSHZ2Q9NRE2 1034 aa20.42■□□□□ 0.86
LIMD2-201ENST00000259006 TOP2AP11388 1531 aaKnown RBP20.42■□□□□ 0.86
LIMD2-201ENST00000259006 BAZ1BQ9UIG0 1483 aaKnown RBP20.41■□□□□ 0.86
LIMD2-201ENST00000259006 ANO8Q9HCE9 1232 aaPredicted RBP20.39■□□□□ 0.85
LIMD2-201ENST00000259006 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
LIMD2-201ENST00000259006 TNIKQ9UKE5 1360 aa20.35■□□□□ 0.85
LIMD2-201ENST00000259006 WRNQ14191 1432 aaPredicted RBP eCLIP20.35■□□□□ 0.85
LIMD2-201ENST00000259006 SMARCA2P51531 1590 aa20.31■□□□□ 0.84
LIMD2-201ENST00000259006 ITGAEP38570 1179 aa20.23■□□□□ 0.83
LIMD2-201ENST00000259006 BCANQ96GW7 911 aa20.23■□□□□ 0.83
LIMD2-201ENST00000259006 SUPT16HQ9Y5B9 1047 aaKnown RBP20.22■□□□□ 0.83
LIMD2-201ENST00000259006 DNAJC5BQ9UF47 199 aa20.18■□□□□ 0.82
LIMD2-201ENST00000259006 PEG3Q9GZU2 1588 aa20.14■□□□□ 0.81
LIMD2-201ENST00000259006 GOLGA3Q08378 1498 aa20.14■□□□□ 0.81
LIMD2-201ENST00000259006 KCNH8Q96L42 1107 aa20.13■□□□□ 0.81
LIMD2-201ENST00000259006 CLIP1P30622 1438 aa20.13■□□□□ 0.81
LIMD2-201ENST00000259006 NCAPD3P42695 1498 aa20.11■□□□□ 0.81
LIMD2-201ENST00000259006 CC2D2AQ9P2K1 1620 aa20.1■□□□□ 0.81
LIMD2-201ENST00000259006 CCDC136Q96JN2 1154 aa20.09■□□□□ 0.81
LIMD2-201ENST00000259006 SALL2Q9Y467 1007 aaPredicted RBP20.01■□□□□ 0.79
LIMD2-201ENST00000259006 KANK4Q5T7N3 995 aaPredicted RBP19.99■□□□□ 0.79
LIMD2-201ENST00000259006 EEA1Q15075 1411 aa19.99■□□□□ 0.79
LIMD2-201ENST00000259006 HIRIP3Q9BW71 556 aaPredicted RBP19.95■□□□□ 0.78
LIMD2-201ENST00000259006 VPS8Q8N3P4 1428 aa19.95■□□□□ 0.78
LIMD2-201ENST00000259006 RAPGEF2Q9Y4G8 1499 aa19.94■□□□□ 0.78
LIMD2-201ENST00000259006 HMGXB3Q12766 1538 aa19.93■□□□□ 0.78
LIMD2-201ENST00000259006 DHX57Q6P158 1386 aaKnown RBP19.93■□□□□ 0.78
LIMD2-201ENST00000259006 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
LIMD2-201ENST00000259006 FKBP8Q14318 412 aa19.91■□□□□ 0.78
LIMD2-201ENST00000259006 DDX10Q13206 875 aaKnown RBP19.88■□□□□ 0.77
LIMD2-201ENST00000259006 RBM19Q9Y4C8 960 aaKnown RBP19.86■□□□□ 0.77
LIMD2-201ENST00000259006 UBE2Q2Q8WVN8 375 aa19.83■□□□□ 0.76
LIMD2-201ENST00000259006 TRIM52Q96A61 297 aa19.82■□□□□ 0.76
LIMD2-201ENST00000259006 NESP48681 1621 aa19.82■□□□□ 0.76
LIMD2-201ENST00000259006 SYNJ1O43426 1573 aa19.82■□□□□ 0.76
LIMD2-201ENST00000259006 CADPSQ9ULU8 1353 aa19.81■□□□□ 0.76
LIMD2-201ENST00000259006 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.81■□□□□ 0.76
LIMD2-201ENST00000259006 DEKP35659 375 aaKnown RBP19.81■□□□□ 0.76
LIMD2-201ENST00000259006 EIF5BO60841 1220 aaKnown RBP19.8■□□□□ 0.76
LIMD2-201ENST00000259006 MSH5O43196 834 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms