RNA–Protein interactions for RNA: ENST00000244741.9

CDKN1A-201, Transcript of cyclin dependent kinase inhibitor 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDKN1A, Length 2,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN1A-201ENST00000244741 NISCHQ9Y2I1 1504 aa38.97■■■■□ 3.83
CDKN1A-201ENST00000244741 CCDC180Q9P1Z9 1646 aa34.13■■■■□ 3.05
CDKN1A-201ENST00000244741 ABCC9O60706 1549 aa33.02■■■□□ 2.88
CDKN1A-201ENST00000244741 DCAF8L2P0C7V8 631 aa32.65■■■□□ 2.82
CDKN1A-201ENST00000244741 ZCCHC6Q5VYS8 1495 aaKnown RBP32.61■■■□□ 2.81
CDKN1A-201ENST00000244741 DCAF1Q9Y4B6 1507 aa32.1■■■□□ 2.73
CDKN1A-201ENST00000244741 NACADO15069 1562 aa31.96■■■□□ 2.71
CDKN1A-201ENST00000244741 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
CDKN1A-201ENST00000244741 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
CDKN1A-201ENST00000244741 SHROOM4Q9ULL8 1493 aa31.65■■■□□ 2.66
CDKN1A-201ENST00000244741 SCRIBQ14160 1630 aa31.51■■■□□ 2.63
CDKN1A-201ENST00000244741 UNC13AQ9UPW8 1703 aa31.23■■■□□ 2.59
CDKN1A-201ENST00000244741 PABPN1Q86U42 306 aaKnown RBP eCLIP31.1■■■□□ 2.57
CDKN1A-201ENST00000244741 BICRAQ9NZM4 1560 aa30.94■■■□□ 2.54
CDKN1A-201ENST00000244741 CECR2Q9BXF3 1484 aa30.43■■■□□ 2.46
CDKN1A-201ENST00000244741 SUPT5HO00267 1087 aaKnown RBP30.17■■■□□ 2.42
CDKN1A-201ENST00000244741 MROH2BQ7Z745 1585 aa30.15■■■□□ 2.42
CDKN1A-201ENST00000244741 BAZ1AQ9NRL2 1556 aaPredicted RBP30.11■■■□□ 2.41
CDKN1A-201ENST00000244741 SMARCA4P51532 1647 aa30.08■■■□□ 2.41
CDKN1A-201ENST00000244741 RSF1Q96T23 1441 aaPredicted RBP30.07■■■□□ 2.4
CDKN1A-201ENST00000244741 EIF4G1Q04637 1599 aaKnown RBP30.07■■■□□ 2.4
CDKN1A-201ENST00000244741 WIZO95785 1651 aa29.88■■■□□ 2.37
CDKN1A-201ENST00000244741 CC2D2AQ9P2K1 1620 aa29.79■■■□□ 2.36
CDKN1A-201ENST00000244741 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
CDKN1A-201ENST00000244741 DNAJC5BQ9UF47 199 aa29.7■■■□□ 2.34
CDKN1A-201ENST00000244741 SMARCA2P51531 1590 aa29.65■■■□□ 2.34
CDKN1A-201ENST00000244741 PEG3Q9GZU2 1588 aa29.65■■■□□ 2.34
CDKN1A-201ENST00000244741 BAZ1BQ9UIG0 1483 aaKnown RBP29.56■■■□□ 2.32
CDKN1A-201ENST00000244741 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
CDKN1A-201ENST00000244741 TOP2AP11388 1531 aaKnown RBP29.47■■■□□ 2.31
CDKN1A-201ENST00000244741 HMGXB3Q12766 1538 aa29.41■■■□□ 2.3
CDKN1A-201ENST00000244741 CCDC88BA6NC98 1476 aa29.24■■■□□ 2.27
CDKN1A-201ENST00000244741 NESP48681 1621 aa28.82■■■□□ 2.2
CDKN1A-201ENST00000244741 CADPSQ9ULU8 1353 aa28.79■■■□□ 2.2
CDKN1A-201ENST00000244741 CFTRP13569 1480 aa28.75■■■□□ 2.19
CDKN1A-201ENST00000244741 LAMC3Q9Y6N6 1575 aa28.6■■■□□ 2.17
CDKN1A-201ENST00000244741 ABCC8Q09428 1581 aa28.51■■■□□ 2.15
CDKN1A-201ENST00000244741 FANCD2Q9BXW9 1451 aa28.49■■■□□ 2.15
CDKN1A-201ENST00000244741 PRDM2Q13029 1718 aa28.48■■■□□ 2.15
CDKN1A-201ENST00000244741 CHIC1Q5VXU3 224 aa28.48■■■□□ 2.15
CDKN1A-201ENST00000244741 PDS5BQ9NTI5 1447 aa28.44■■■□□ 2.14
CDKN1A-201ENST00000244741 KIF21AQ7Z4S6 1674 aa28.39■■■□□ 2.14
CDKN1A-201ENST00000244741 CEP164Q9UPV0 1460 aa28.35■■■□□ 2.13
CDKN1A-201ENST00000244741 ERCC6Q03468 1493 aa28.34■■■□□ 2.13
CDKN1A-201ENST00000244741 TRIM41Q8WV44 630 aa28.32■■■□□ 2.12
CDKN1A-201ENST00000244741 WRNQ14191 1432 aaPredicted RBP eCLIP28.32■■■□□ 2.12
CDKN1A-201ENST00000244741 SYNJ1O43426 1573 aa28.23■■■□□ 2.11
CDKN1A-201ENST00000244741 CUX1P39880 1505 aa28.22■■■□□ 2.11
CDKN1A-201ENST00000244741 URB2Q14146 1524 aaKnown RBP28.17■■■□□ 2.1
CDKN1A-201ENST00000244741 MRC2Q9UBG0 1479 aa28.12■■■□□ 2.09
CDKN1A-201ENST00000244741 TOPBP1Q92547 1522 aa28.1■■■□□ 2.09
CDKN1A-201ENST00000244741 TOP2BQ02880 1626 aa28.09■■■□□ 2.09
CDKN1A-201ENST00000244741 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
CDKN1A-201ENST00000244741 BIVM-ERCC5R4GMW8 1640 aa28.04■■■□□ 2.08
CDKN1A-201ENST00000244741 THOC2Q8NI27 1593 aaKnown RBP28.02■■■□□ 2.08
CDKN1A-201ENST00000244741 FGD5Q6ZNL6 1462 aa28■■■□□ 2.07
CDKN1A-201ENST00000244741 WDR62O43379 1518 aa27.96■■■□□ 2.07
CDKN1A-201ENST00000244741 POLA1P09884 1462 aaPredicted RBP27.94■■■□□ 2.06
CDKN1A-201ENST00000244741 RAD54L2Q9Y4B4 1467 aa27.92■■■□□ 2.06
CDKN1A-201ENST00000244741 FAM9AQ8IZU1 332 aaPredicted RBP27.92■■■□□ 2.06
CDKN1A-201ENST00000244741 SOGA1O94964 1423 aa27.86■■■□□ 2.05
CDKN1A-201ENST00000244741 CUX2O14529 1486 aa27.81■■■□□ 2.04
CDKN1A-201ENST00000244741 RUSC2Q8N2Y8 1516 aa27.81■■■□□ 2.04
CDKN1A-201ENST00000244741 TDRD9Q8NDG6 1382 aaKnown RBP27.71■■■□□ 2.03
CDKN1A-201ENST00000244741 TARBP1Q13395 1621 aaKnown RBP27.7■■■□□ 2.03
CDKN1A-201ENST00000244741 ABCA10Q8WWZ4 1543 aa27.68■■■□□ 2.02
CDKN1A-201ENST00000244741 IFT140Q96RY7 1462 aa27.67■■■□□ 2.02
CDKN1A-201ENST00000244741 EHMT2Q96KQ7 1210 aa27.66■■■□□ 2.02
CDKN1A-201ENST00000244741 ZNF608Q9ULD9 1512 aaPredicted RBP27.65■■■□□ 2.02
CDKN1A-201ENST00000244741 KIF27Q86VH2 1401 aa27.63■■■□□ 2.01
CDKN1A-201ENST00000244741 AQRO60306 1485 aaKnown RBP eCLIP27.62■■■□□ 2.014e-7■■■■■ 34
CDKN1A-201ENST00000244741 WDR97A6NE52 1622 aa27.61■■■□□ 2.01
CDKN1A-201ENST00000244741 CSRNP3Q8WYN3 585 aa27.56■■■□□ 2
CDKN1A-201ENST00000244741 GAPVD1Q14C86 1478 aa27.53■■■□□ 2
CDKN1A-201ENST00000244741 EEA1Q15075 1411 aa27.5■■□□□ 1.99
CDKN1A-201ENST00000244741 ABCA5Q8WWZ7 1642 aa27.49■■□□□ 1.99
CDKN1A-201ENST00000244741 LOC105371045A0A1W2PR82 267 aa27.49■■□□□ 1.99
CDKN1A-201ENST00000244741 IGF1RP08069 1367 aa27.48■■□□□ 1.99
CDKN1A-201ENST00000244741 EIF4G3O43432 1585 aaKnown RBP27.47■■□□□ 1.99
CDKN1A-201ENST00000244741 PBRM1Q86U86 1689 aa27.37■■□□□ 1.97
CDKN1A-201ENST00000244741 GRIN2BQ13224 1484 aa27.36■■□□□ 1.97
CDKN1A-201ENST00000244741 CARMIL1Q5VZK9 1371 aa27.33■■□□□ 1.97
CDKN1A-201ENST00000244741 ERICH3Q5RHP9 1530 aa27.32■■□□□ 1.96
CDKN1A-201ENST00000244741 SNAPC4Q5SXM2 1469 aa27.3■■□□□ 1.96
CDKN1A-201ENST00000244741 RAPGEF2Q9Y4G8 1499 aa27.29■■□□□ 1.96
CDKN1A-201ENST00000244741 PRXQ9BXM0 1461 aa27.28■■□□□ 1.96
CDKN1A-201ENST00000244741 FBLN2P98095 1184 aa27.25■■□□□ 1.95
CDKN1A-201ENST00000244741 UBTFP17480 764 aaKnown RBP27.24■■□□□ 1.95
CDKN1A-201ENST00000244741 KIF21BO75037 1637 aa27.21■■□□□ 1.95
CDKN1A-201ENST00000244741 CUL7Q14999 1698 aa27.21■■□□□ 1.95
CDKN1A-201ENST00000244741 ADAMTS12P58397 1594 aa27.19■■□□□ 1.94
CDKN1A-201ENST00000244741 GOLGA3Q08378 1498 aa27.18■■□□□ 1.94
CDKN1A-201ENST00000244741 FHAD1B1AJZ9 1412 aa27.18■■□□□ 1.94
CDKN1A-201ENST00000244741 CHMP7Q8WUX9 453 aaPredicted RBP27.16■■□□□ 1.94
CDKN1A-201ENST00000244741 MAGI1Q96QZ7 1491 aaPredicted RBP27.16■■□□□ 1.94
CDKN1A-201ENST00000244741 RANGAP1P46060 587 aaPredicted RBP27.12■■□□□ 1.93
CDKN1A-201ENST00000244741 SYNJ2O15056 1496 aa27.09■■□□□ 1.93
CDKN1A-201ENST00000244741 GRIN2AQ12879 1464 aa27.04■■□□□ 1.92
CDKN1A-201ENST00000244741 PCGF6Q9BYE7 350 aa27.03■■□□□ 1.92
CDKN1A-201ENST00000244741 CHD1O14646 1710 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms