RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NISCHQ9Y2I1 1504 aa19.93■□□□□ 0.78
VPS4B-201ENST00000238497 ABCC9O60706 1549 aa17.73■□□□□ 0.43
VPS4B-201ENST00000238497 CCDC180Q9P1Z9 1646 aa17.6■□□□□ 0.41
VPS4B-201ENST00000238497 DCAF8L2P0C7V8 631 aa17.23■□□□□ 0.35
VPS4B-201ENST00000238497 RB1CC1Q8TDY2 1594 aa16.79■□□□□ 0.28
VPS4B-201ENST00000238497 NACADO15069 1562 aa16.69■□□□□ 0.26
VPS4B-201ENST00000238497 PABPN1Q86U42 306 aaKnown RBP eCLIP16.67■□□□□ 0.26
VPS4B-201ENST00000238497 ZCCHC6Q5VYS8 1495 aaKnown RBP16.53■□□□□ 0.24
VPS4B-201ENST00000238497 MYO15BQ96JP2 1530 aa16.41■□□□□ 0.22
VPS4B-201ENST00000238497 DNAJC5BQ9UF47 199 aa16.4■□□□□ 0.22
VPS4B-201ENST00000238497 DCAF1Q9Y4B6 1507 aa16.32■□□□□ 0.2
VPS4B-201ENST00000238497 SCRIBQ14160 1630 aa16.31■□□□□ 0.2
VPS4B-201ENST00000238497 UNC13AQ9UPW8 1703 aa16.27■□□□□ 0.2
VPS4B-201ENST00000238497 BICRAQ9NZM4 1560 aa16.22■□□□□ 0.19
VPS4B-201ENST00000238497 SHROOM4Q9ULL8 1493 aa16.04■□□□□ 0.16
VPS4B-201ENST00000238497 CECR2Q9BXF3 1484 aa15.88■□□□□ 0.13
VPS4B-201ENST00000238497 EIF4G1Q04637 1599 aaKnown RBP15.88■□□□□ 0.13
VPS4B-201ENST00000238497 CC2D2AQ9P2K1 1620 aa15.86■□□□□ 0.13
VPS4B-201ENST00000238497 ATAD2BQ9ULI0 1458 aa15.48■□□□□ 0.07
VPS4B-201ENST00000238497 SMARCA4P51532 1647 aa15.46■□□□□ 0.07
VPS4B-201ENST00000238497 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
VPS4B-201ENST00000238497 NCAPD3P42695 1498 aa15.44■□□□□ 0.06
VPS4B-201ENST00000238497 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
VPS4B-201ENST00000238497 BAZ1BQ9UIG0 1483 aaKnown RBP15.4■□□□□ 0.06
VPS4B-201ENST00000238497 MROH2BQ7Z745 1585 aa15.4■□□□□ 0.06
VPS4B-201ENST00000238497 ERCC6Q03468 1493 aa15.32■□□□□ 0.04
VPS4B-201ENST00000238497 HMGXB3Q12766 1538 aa15.29■□□□□ 0.04
VPS4B-201ENST00000238497 NESP48681 1621 aa15.25■□□□□ 0.03
VPS4B-201ENST00000238497 WIZO95785 1651 aa15.21■□□□□ 0.03
VPS4B-201ENST00000238497 SUPT5HO00267 1087 aaKnown RBP15.21■□□□□ 0.03
VPS4B-201ENST00000238497 RSF1Q96T23 1441 aaPredicted RBP15.2■□□□□ 0.02
VPS4B-201ENST00000238497 PEG3Q9GZU2 1588 aa15.19■□□□□ 0.02
VPS4B-201ENST00000238497 CADPSQ9ULU8 1353 aa15.08■□□□□ 0.01
VPS4B-201ENST00000238497 PDS5BQ9NTI5 1447 aa15.07■□□□□ 0
VPS4B-201ENST00000238497 LAMC3Q9Y6N6 1575 aa15.02■□□□□ -0
VPS4B-201ENST00000238497 TOP2AP11388 1531 aaKnown RBP14.99□□□□□ -0.01
VPS4B-201ENST00000238497 CUX2O14529 1486 aa14.99□□□□□ -0.01
VPS4B-201ENST00000238497 KIF21AQ7Z4S6 1674 aa14.92□□□□□ -0.02
VPS4B-201ENST00000238497 FANCD2Q9BXW9 1451 aa14.91□□□□□ -0.02
VPS4B-201ENST00000238497 CCDC88BA6NC98 1476 aa14.91□□□□□ -0.02
VPS4B-201ENST00000238497 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
VPS4B-201ENST00000238497 CFTRP13569 1480 aa14.88□□□□□ -0.03
VPS4B-201ENST00000238497 MRC2Q9UBG0 1479 aa14.87□□□□□ -0.03
VPS4B-201ENST00000238497 DNAJC5Q9H3Z4 198 aa14.86□□□□□ -0.03
VPS4B-201ENST00000238497 THOC2Q8NI27 1593 aaKnown RBP14.84□□□□□ -0.03
VPS4B-201ENST00000238497 WDR62O43379 1518 aa14.73□□□□□ -0.05
VPS4B-201ENST00000238497 URB2Q14146 1524 aaKnown RBP14.72□□□□□ -0.05
VPS4B-201ENST00000238497 TOPBP1Q92547 1522 aa14.62□□□□□ -0.07
VPS4B-201ENST00000238497 FBLN2P98095 1184 aa14.61□□□□□ -0.07
VPS4B-201ENST00000238497 OSCARQ8IYS5 282 aa14.58□□□□□ -0.08
VPS4B-201ENST00000238497 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
VPS4B-201ENST00000238497 ZNF608Q9ULD9 1512 aaPredicted RBP14.56□□□□□ -0.08
VPS4B-201ENST00000238497 TRIM41Q8WV44 630 aa14.56□□□□□ -0.08
VPS4B-201ENST00000238497 PRDM2Q13029 1718 aa14.56□□□□□ -0.08
VPS4B-201ENST00000238497 IFT140Q96RY7 1462 aa14.55□□□□□ -0.08
VPS4B-201ENST00000238497 DNMBPQ6XZF7 1577 aa14.53□□□□□ -0.08
VPS4B-201ENST00000238497 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
VPS4B-201ENST00000238497 AQRO60306 1485 aaKnown RBP eCLIP14.52□□□□□ -0.08
VPS4B-201ENST00000238497 SOGA1O94964 1423 aa14.52□□□□□ -0.09
VPS4B-201ENST00000238497 RAD54L2Q9Y4B4 1467 aa14.52□□□□□ -0.09
VPS4B-201ENST00000238497 POLA1P09884 1462 aaPredicted RBP14.5□□□□□ -0.09
VPS4B-201ENST00000238497 FGD5Q6ZNL6 1462 aa14.47□□□□□ -0.09
VPS4B-201ENST00000238497 CUX1P39880 1505 aa14.44□□□□□ -0.1
VPS4B-201ENST00000238497 CHMP7Q8WUX9 453 aaPredicted RBP14.43□□□□□ -0.1
VPS4B-201ENST00000238497 EIF4G3O43432 1585 aaKnown RBP14.4□□□□□ -0.1
VPS4B-201ENST00000238497 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
VPS4B-201ENST00000238497 TARBP1Q13395 1621 aaKnown RBP14.36□□□□□ -0.11
VPS4B-201ENST00000238497 EHMT2Q96KQ7 1210 aa14.33□□□□□ -0.12
VPS4B-201ENST00000238497 SNAPC4Q5SXM2 1469 aa14.33□□□□□ -0.12
VPS4B-201ENST00000238497 CYB5RLQ6IPT4 315 aa14.32□□□□□ -0.12
VPS4B-201ENST00000238497 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
VPS4B-201ENST00000238497 CHIC1Q5VXU3 224 aa14.3□□□□□ -0.12
VPS4B-201ENST00000238497 GRIN2BQ13224 1484 aa14.3□□□□□ -0.12
VPS4B-201ENST00000238497 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
VPS4B-201ENST00000238497 ABCA10Q8WWZ4 1543 aa14.24□□□□□ -0.13
VPS4B-201ENST00000238497 CHD1O14646 1710 aa14.23□□□□□ -0.13
VPS4B-201ENST00000238497 MAGI1Q96QZ7 1491 aaPredicted RBP14.22□□□□□ -0.13
VPS4B-201ENST00000238497 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
VPS4B-201ENST00000238497 SYNJ2O15056 1496 aa14.2□□□□□ -0.14
VPS4B-201ENST00000238497 ARHGEF11O15085 1522 aa14.19□□□□□ -0.14
VPS4B-201ENST00000238497 FAM9AQ8IZU1 332 aaPredicted RBP14.19□□□□□ -0.14
VPS4B-201ENST00000238497 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
VPS4B-201ENST00000238497 RIMBP3CA6NJZ7 1639 aa14.16□□□□□ -0.14
VPS4B-201ENST00000238497 RIMBP3BA6NNM3 1639 aa14.16□□□□□ -0.14
VPS4B-201ENST00000238497 RIMBP3Q9UFD9 1639 aa14.16□□□□□ -0.14
VPS4B-201ENST00000238497 BIVM-ERCC5R4GMW8 1640 aa14.16□□□□□ -0.14
VPS4B-201ENST00000238497 LOC105371045A0A1W2PR82 267 aa14.14□□□□□ -0.15
VPS4B-201ENST00000238497 WDR97A6NE52 1622 aa14.14□□□□□ -0.15
VPS4B-201ENST00000238497 PBRM1Q86U86 1689 aa14.13□□□□□ -0.15
VPS4B-201ENST00000238497 ABCA5Q8WWZ7 1642 aa14.13□□□□□ -0.15
VPS4B-201ENST00000238497 TTBK1Q5TCY1 1321 aaPredicted RBP14.12□□□□□ -0.15
VPS4B-201ENST00000238497 FHAD1B1AJZ9 1412 aa14.11□□□□□ -0.15
VPS4B-201ENST00000238497 KIF27Q86VH2 1401 aa14.11□□□□□ -0.15
VPS4B-201ENST00000238497 GRIN2AQ12879 1464 aa14.1□□□□□ -0.15
VPS4B-201ENST00000238497 ARAP1Q96P48 1450 aa14.06□□□□□ -0.16
VPS4B-201ENST00000238497 ADAMTS12P58397 1594 aa14.05□□□□□ -0.16
VPS4B-201ENST00000238497 JPH4Q96JJ6 628 aa14.05□□□□□ -0.16
VPS4B-201ENST00000238497 ERICH3Q5RHP9 1530 aa14.05□□□□□ -0.16
VPS4B-201ENST00000238497 IGF1RP08069 1367 aa14.05□□□□□ -0.16
VPS4B-201ENST00000238497 CLASP1Q7Z460 1538 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 222.5 ms