RNA–Protein interactions for RNA: ENST00000229251.7

COPS7A-201, Transcript of COP9 signalosome subunit 7A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS7A, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-201ENST00000229251 NISCHQ9Y2I1 1504 aa29.32■■■□□ 2.28
COPS7A-201ENST00000229251 ABCC9O60706 1549 aa27.12■■□□□ 1.93
COPS7A-201ENST00000229251 CCDC180Q9P1Z9 1646 aa26.65■■□□□ 1.86
COPS7A-201ENST00000229251 DNAJC5BQ9UF47 199 aa25.91■■□□□ 1.74
COPS7A-201ENST00000229251 RB1CC1Q8TDY2 1594 aa25.63■■□□□ 1.69
COPS7A-201ENST00000229251 NACADO15069 1562 aa25.32■■□□□ 1.64
COPS7A-201ENST00000229251 PABPN1Q86U42 306 aaKnown RBP eCLIP25.1■■□□□ 1.61
COPS7A-201ENST00000229251 UNC13AQ9UPW8 1703 aa25.04■■□□□ 1.6
COPS7A-201ENST00000229251 DCAF8L2P0C7V8 631 aa24.92■■□□□ 1.58
COPS7A-201ENST00000229251 BICRAQ9NZM4 1560 aa24.86■■□□□ 1.57
COPS7A-201ENST00000229251 MYO15BQ96JP2 1530 aa24.78■■□□□ 1.56
COPS7A-201ENST00000229251 SHROOM4Q9ULL8 1493 aa24.56■■□□□ 1.52
COPS7A-201ENST00000229251 CECR2Q9BXF3 1484 aa24.53■■□□□ 1.52
COPS7A-201ENST00000229251 CC2D2AQ9P2K1 1620 aa24.51■■□□□ 1.51
COPS7A-201ENST00000229251 ZCCHC6Q5VYS8 1495 aaKnown RBP24.46■■□□□ 1.51
COPS7A-201ENST00000229251 EIF4G1Q04637 1599 aaKnown RBP24.32■■□□□ 1.48
COPS7A-201ENST00000229251 DNAJC5Q9H3Z4 198 aa24.31■■□□□ 1.48
COPS7A-201ENST00000229251 DCAF1Q9Y4B6 1507 aa24.23■■□□□ 1.47
COPS7A-201ENST00000229251 SCRIBQ14160 1630 aa24.15■■□□□ 1.46
COPS7A-201ENST00000229251 CUX2O14529 1486 aa23.7■■□□□ 1.39
COPS7A-201ENST00000229251 ERCC6Q03468 1493 aa23.51■■□□□ 1.35
COPS7A-201ENST00000229251 NCAPD3P42695 1498 aa23.34■■□□□ 1.33
COPS7A-201ENST00000229251 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
COPS7A-201ENST00000229251 HMGXB3Q12766 1538 aa23.15■■□□□ 1.3
COPS7A-201ENST00000229251 SMARCA2P51531 1590 aa23.12■■□□□ 1.29
COPS7A-201ENST00000229251 NESP48681 1621 aa23.11■■□□□ 1.29
COPS7A-201ENST00000229251 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
COPS7A-201ENST00000229251 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
COPS7A-201ENST00000229251 TRIM41Q8WV44 630 aa22.96■■□□□ 1.27
COPS7A-201ENST00000229251 LAMC3Q9Y6N6 1575 aa22.95■■□□□ 1.26
COPS7A-201ENST00000229251 BAZ1BQ9UIG0 1483 aaKnown RBP22.92■■□□□ 1.26
COPS7A-201ENST00000229251 SUPT5HO00267 1087 aaKnown RBP22.92■■□□□ 1.26
COPS7A-201ENST00000229251 KIF21AQ7Z4S6 1674 aa22.86■■□□□ 1.25
COPS7A-201ENST00000229251 BAZ1AQ9NRL2 1556 aaPredicted RBP22.83■■□□□ 1.24
COPS7A-201ENST00000229251 PEG3Q9GZU2 1588 aa22.82■■□□□ 1.24
COPS7A-201ENST00000229251 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
COPS7A-201ENST00000229251 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.22
COPS7A-201ENST00000229251 WDR62O43379 1518 aa22.62■■□□□ 1.21
COPS7A-201ENST00000229251 CADPSQ9ULU8 1353 aa22.59■■□□□ 1.21
COPS7A-201ENST00000229251 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
COPS7A-201ENST00000229251 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
COPS7A-201ENST00000229251 OSCARQ8IYS5 282 aa22.47■■□□□ 1.19
COPS7A-201ENST00000229251 CEP164Q9UPV0 1460 aa22.44■■□□□ 1.18
COPS7A-201ENST00000229251 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
COPS7A-201ENST00000229251 RIMBP3CA6NJZ7 1639 aa22.26■■□□□ 1.15
COPS7A-201ENST00000229251 RIMBP3BA6NNM3 1639 aa22.26■■□□□ 1.15
COPS7A-201ENST00000229251 RIMBP3Q9UFD9 1639 aa22.26■■□□□ 1.15
COPS7A-201ENST00000229251 WIZO95785 1651 aa22.26■■□□□ 1.15
COPS7A-201ENST00000229251 CFTRP13569 1480 aa22.21■■□□□ 1.15
COPS7A-201ENST00000229251 CHIC1Q5VXU3 224 aa22.19■■□□□ 1.14
COPS7A-201ENST00000229251 URB2Q14146 1524 aaKnown RBP22.17■■□□□ 1.14
COPS7A-201ENST00000229251 ARHGEF11O15085 1522 aa22.13■■□□□ 1.13
COPS7A-201ENST00000229251 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
COPS7A-201ENST00000229251 PRDM2Q13029 1718 aa22.03■■□□□ 1.12
COPS7A-201ENST00000229251 IFT140Q96RY7 1462 aa22.02■■□□□ 1.12
COPS7A-201ENST00000229251 ZNF608Q9ULD9 1512 aaPredicted RBP21.98■■□□□ 1.11
COPS7A-201ENST00000229251 CYB5RLQ6IPT4 315 aa21.95■■□□□ 1.1
COPS7A-201ENST00000229251 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
COPS7A-201ENST00000229251 EIF4G3O43432 1585 aaKnown RBP21.88■■□□□ 1.09
COPS7A-201ENST00000229251 TOPBP1Q92547 1522 aa21.85■■□□□ 1.09
COPS7A-201ENST00000229251 ARAP1Q96P48 1450 aa21.85■■□□□ 1.09
COPS7A-201ENST00000229251 CHD1O14646 1710 aa21.85■■□□□ 1.09
COPS7A-201ENST00000229251 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
COPS7A-201ENST00000229251 AEBP2Q6ZN18 517 aaPredicted RBP21.76■■□□□ 1.07
COPS7A-201ENST00000229251 CCDC88BA6NC98 1476 aa21.75■■□□□ 1.07
COPS7A-201ENST00000229251 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
COPS7A-201ENST00000229251 TARBP1Q13395 1621 aaKnown RBP21.71■■□□□ 1.07
COPS7A-201ENST00000229251 AQRO60306 1485 aaKnown RBP eCLIP21.7■■□□□ 1.06
COPS7A-201ENST00000229251 FBLN2P98095 1184 aa21.68■■□□□ 1.06
COPS7A-201ENST00000229251 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.05
COPS7A-201ENST00000229251 CLASP1Q7Z460 1538 aa21.57■■□□□ 1.04
COPS7A-201ENST00000229251 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
COPS7A-201ENST00000229251 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
COPS7A-201ENST00000229251 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
COPS7A-201ENST00000229251 RAD54L2Q9Y4B4 1467 aa21.47■■□□□ 1.03
COPS7A-201ENST00000229251 TDRD9Q8NDG6 1382 aaKnown RBP21.47■■□□□ 1.03
COPS7A-201ENST00000229251 SOGA1O94964 1423 aa21.46■■□□□ 1.03
COPS7A-201ENST00000229251 MAGI1Q96QZ7 1491 aaPredicted RBP21.45■■□□□ 1.03
COPS7A-201ENST00000229251 CHMP7Q8WUX9 453 aaPredicted RBP21.45■■□□□ 1.02
COPS7A-201ENST00000229251 SYNJ2O15056 1496 aa21.38■■□□□ 1.01
COPS7A-201ENST00000229251 GRIN2BQ13224 1484 aa21.38■■□□□ 1.01
COPS7A-201ENST00000229251 GAPVD1Q14C86 1478 aa21.37■■□□□ 1.01
COPS7A-201ENST00000229251 FGD5Q6ZNL6 1462 aa21.36■■□□□ 1.01
COPS7A-201ENST00000229251 PBRM1Q86U86 1689 aa21.28■■□□□ 1
COPS7A-201ENST00000229251 WRNQ14191 1432 aaPredicted RBP eCLIP21.26■□□□□ 0.99
COPS7A-201ENST00000229251 LOC105371045A0A1W2PR82 267 aa21.24■□□□□ 0.99
COPS7A-201ENST00000229251 EEA1Q15075 1411 aa21.23■□□□□ 0.99
COPS7A-201ENST00000229251 CUX1P39880 1505 aa21.23■□□□□ 0.99
COPS7A-201ENST00000229251 ERCC6L2Q5T890 1561 aa21.13■□□□□ 0.97
COPS7A-201ENST00000229251 ABCA5Q8WWZ7 1642 aa21.13■□□□□ 0.97
COPS7A-201ENST00000229251 BIVM-ERCC5R4GMW8 1640 aa21.12■□□□□ 0.97
COPS7A-201ENST00000229251 TOP2BQ02880 1626 aa21.12■□□□□ 0.97
COPS7A-201ENST00000229251 KIF13AQ9H1H9 1805 aa21.11■□□□□ 0.97
COPS7A-201ENST00000229251 ABCA10Q8WWZ4 1543 aa21.1■□□□□ 0.97
COPS7A-201ENST00000229251 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
COPS7A-201ENST00000229251 GRIN2AQ12879 1464 aa21.1■□□□□ 0.97
COPS7A-201ENST00000229251 FAM9AQ8IZU1 332 aaPredicted RBP21.09■□□□□ 0.97
COPS7A-201ENST00000229251 NUP160Q12769 1436 aa21.05■□□□□ 0.96
COPS7A-201ENST00000229251 SHROOM2Q13796 1616 aa21.05■□□□□ 0.96
COPS7A-201ENST00000229251 ADAMTS12P58397 1594 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms