RNA–Protein interactions for RNA: ENST00000227266.9

CTSC-201, Transcript of cathepsin C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTSC, Length 1,921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSC-201ENST00000227266 NISCHQ9Y2I1 1504 aa25.97■■□□□ 1.75
CTSC-201ENST00000227266 CCDC180Q9P1Z9 1646 aa22.78■■□□□ 1.24
CTSC-201ENST00000227266 ABCC9O60706 1549 aa22.01■■□□□ 1.11
CTSC-201ENST00000227266 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
CTSC-201ENST00000227266 DCAF8L2P0C7V8 631 aa21.68■■□□□ 1.06
CTSC-201ENST00000227266 DCAF1Q9Y4B6 1507 aa21.45■■□□□ 1.02
CTSC-201ENST00000227266 NACADO15069 1562 aa21.36■■□□□ 1.01
CTSC-201ENST00000227266 MYO15BQ96JP2 1530 aa21.35■■□□□ 1.01
CTSC-201ENST00000227266 RB1CC1Q8TDY2 1594 aa21.28■■□□□ 1
CTSC-201ENST00000227266 SHROOM4Q9ULL8 1493 aa20.96■□□□□ 0.95
CTSC-201ENST00000227266 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
CTSC-201ENST00000227266 UNC13AQ9UPW8 1703 aa20.73■□□□□ 0.91
CTSC-201ENST00000227266 PABPN1Q86U42 306 aaKnown RBP eCLIP20.7■□□□□ 0.91
CTSC-201ENST00000227266 BICRAQ9NZM4 1560 aa20.62■□□□□ 0.89
CTSC-201ENST00000227266 CECR2Q9BXF3 1484 aa20.23■□□□□ 0.83
CTSC-201ENST00000227266 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.81
CTSC-201ENST00000227266 EIF4G1Q04637 1599 aaKnown RBP20.06■□□□□ 0.8
CTSC-201ENST00000227266 MROH2BQ7Z745 1585 aa20.05■□□□□ 0.8
CTSC-201ENST00000227266 SMARCA4P51532 1647 aa20.03■□□□□ 0.8
CTSC-201ENST00000227266 RSF1Q96T23 1441 aaPredicted RBP20■□□□□ 0.79
CTSC-201ENST00000227266 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
CTSC-201ENST00000227266 CC2D2AQ9P2K1 1620 aa19.86■□□□□ 0.77
CTSC-201ENST00000227266 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
CTSC-201ENST00000227266 WIZO95785 1651 aa19.83■□□□□ 0.77
CTSC-201ENST00000227266 SMARCA2P51531 1590 aa19.81■□□□□ 0.76
CTSC-201ENST00000227266 DNAJC5BQ9UF47 199 aa19.8■□□□□ 0.76
CTSC-201ENST00000227266 PEG3Q9GZU2 1588 aa19.79■□□□□ 0.76
CTSC-201ENST00000227266 NCAPD3P42695 1498 aa19.74■□□□□ 0.75
CTSC-201ENST00000227266 BAZ1BQ9UIG0 1483 aaKnown RBP19.71■□□□□ 0.75
CTSC-201ENST00000227266 HMGXB3Q12766 1538 aa19.65■□□□□ 0.74
CTSC-201ENST00000227266 TOP2AP11388 1531 aaKnown RBP19.64■□□□□ 0.73
CTSC-201ENST00000227266 CCDC88BA6NC98 1476 aa19.45■□□□□ 0.7
CTSC-201ENST00000227266 CADPSQ9ULU8 1353 aa19.22■□□□□ 0.67
CTSC-201ENST00000227266 CFTRP13569 1480 aa19.18■□□□□ 0.66
CTSC-201ENST00000227266 NESP48681 1621 aa19.18■□□□□ 0.66
CTSC-201ENST00000227266 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
CTSC-201ENST00000227266 PDS5BQ9NTI5 1447 aa19.02■□□□□ 0.64
CTSC-201ENST00000227266 FANCD2Q9BXW9 1451 aa19■□□□□ 0.63
CTSC-201ENST00000227266 PRDM2Q13029 1718 aa18.94■□□□□ 0.62
CTSC-201ENST00000227266 ERCC6Q03468 1493 aa18.93■□□□□ 0.62
CTSC-201ENST00000227266 CEP164Q9UPV0 1460 aa18.92■□□□□ 0.62
CTSC-201ENST00000227266 ABCC8Q09428 1581 aa18.89■□□□□ 0.62
CTSC-201ENST00000227266 KIF21AQ7Z4S6 1674 aa18.87■□□□□ 0.61
CTSC-201ENST00000227266 CHIC1Q5VXU3 224 aa18.86■□□□□ 0.61
CTSC-201ENST00000227266 WRNQ14191 1432 aaPredicted RBP eCLIP18.86■□□□□ 0.61
CTSC-201ENST00000227266 TRIM41Q8WV44 630 aa18.8■□□□□ 0.6
CTSC-201ENST00000227266 MRC2Q9UBG0 1479 aa18.79■□□□□ 0.6
CTSC-201ENST00000227266 CUX1P39880 1505 aa18.77■□□□□ 0.6
CTSC-201ENST00000227266 URB2Q14146 1524 aaKnown RBP18.77■□□□□ 0.6
CTSC-201ENST00000227266 SYNJ1O43426 1573 aa18.76■□□□□ 0.59
CTSC-201ENST00000227266 TOPBP1Q92547 1522 aa18.73■□□□□ 0.59
CTSC-201ENST00000227266 DNMBPQ6XZF7 1577 aa18.72■□□□□ 0.59
CTSC-201ENST00000227266 TOP2BQ02880 1626 aa18.7■□□□□ 0.58
CTSC-201ENST00000227266 THOC2Q8NI27 1593 aaKnown RBP18.7■□□□□ 0.58
CTSC-201ENST00000227266 WDR62O43379 1518 aa18.68■□□□□ 0.58
CTSC-201ENST00000227266 BIVM-ERCC5R4GMW8 1640 aa18.66■□□□□ 0.58
CTSC-201ENST00000227266 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
CTSC-201ENST00000227266 POLA1P09884 1462 aaPredicted RBP18.62■□□□□ 0.57
CTSC-201ENST00000227266 SOGA1O94964 1423 aa18.57■□□□□ 0.56
CTSC-201ENST00000227266 RAD54L2Q9Y4B4 1467 aa18.57■□□□□ 0.56
CTSC-201ENST00000227266 CUX2O14529 1486 aa18.54■□□□□ 0.56
CTSC-201ENST00000227266 IFT140Q96RY7 1462 aa18.5■□□□□ 0.55
CTSC-201ENST00000227266 FAM9AQ8IZU1 332 aaPredicted RBP18.47■□□□□ 0.55
CTSC-201ENST00000227266 ABCA10Q8WWZ4 1543 aa18.46■□□□□ 0.55
CTSC-201ENST00000227266 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
CTSC-201ENST00000227266 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
CTSC-201ENST00000227266 RUSC2Q8N2Y8 1516 aa18.42■□□□□ 0.54
CTSC-201ENST00000227266 KIF27Q86VH2 1401 aa18.42■□□□□ 0.54
CTSC-201ENST00000227266 ZNF608Q9ULD9 1512 aaPredicted RBP18.41■□□□□ 0.54
CTSC-201ENST00000227266 AQRO60306 1485 aaKnown RBP eCLIP18.39■□□□□ 0.538e-7■■■■■ 32.9
CTSC-201ENST00000227266 WDR97A6NE52 1622 aa18.37■□□□□ 0.53
CTSC-201ENST00000227266 GAPVD1Q14C86 1478 aa18.35■□□□□ 0.53
CTSC-201ENST00000227266 EEA1Q15075 1411 aa18.35■□□□□ 0.53
CTSC-201ENST00000227266 CSRNP3Q8WYN3 585 aa18.33■□□□□ 0.52
CTSC-201ENST00000227266 ABCA5Q8WWZ7 1642 aa18.31■□□□□ 0.52
CTSC-201ENST00000227266 EIF4G3O43432 1585 aaKnown RBP18.31■□□□□ 0.52
CTSC-201ENST00000227266 IGF1RP08069 1367 aa18.3■□□□□ 0.52
CTSC-201ENST00000227266 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
CTSC-201ENST00000227266 EHMT2Q96KQ7 1210 aa18.24■□□□□ 0.51
CTSC-201ENST00000227266 ERICH3Q5RHP9 1530 aa18.23■□□□□ 0.51
CTSC-201ENST00000227266 CARMIL1Q5VZK9 1371 aa18.2■□□□□ 0.5
CTSC-201ENST00000227266 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
CTSC-201ENST00000227266 PBRM1Q86U86 1689 aa18.2■□□□□ 0.5
CTSC-201ENST00000227266 PRXQ9BXM0 1461 aa18.17■□□□□ 0.5
CTSC-201ENST00000227266 MAGI1Q96QZ7 1491 aaPredicted RBP18.15■□□□□ 0.5
CTSC-201ENST00000227266 FBLN2P98095 1184 aa18.15■□□□□ 0.5
CTSC-201ENST00000227266 FHAD1B1AJZ9 1412 aa18.15■□□□□ 0.5
CTSC-201ENST00000227266 LOC105371045A0A1W2PR82 267 aa18.14■□□□□ 0.49
CTSC-201ENST00000227266 CUL7Q14999 1698 aa18.13■□□□□ 0.49
CTSC-201ENST00000227266 ADAMTS12P58397 1594 aa18.12■□□□□ 0.49
CTSC-201ENST00000227266 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
CTSC-201ENST00000227266 RAPGEF2Q9Y4G8 1499 aa18.12■□□□□ 0.49
CTSC-201ENST00000227266 SYNJ2O15056 1496 aa18.09■□□□□ 0.49
CTSC-201ENST00000227266 KIF21BO75037 1637 aa18.09■□□□□ 0.49
CTSC-201ENST00000227266 GOLGA3Q08378 1498 aa18.09■□□□□ 0.49
CTSC-201ENST00000227266 UBTFP17480 764 aaKnown RBP18.08■□□□□ 0.49
CTSC-201ENST00000227266 GRIN2AQ12879 1464 aa18.04■□□□□ 0.48
CTSC-201ENST00000227266 CHD1O14646 1710 aa17.95■□□□□ 0.46
CTSC-201ENST00000227266 TNIKQ9UKE5 1360 aa17.95■□□□□ 0.46
CTSC-201ENST00000227266 RANGAP1P46060 587 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms