RNA–Protein interactions for RNA: ENST00000225519.3

SHPK-201, Transcript of sedoheptulokinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHPK, Length 3,838 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPK-201ENST00000225519 NISCHQ9Y2I1 1504 aa26.72■■□□□ 1.87
SHPK-201ENST00000225519 SHROOM4Q9ULL8 1493 aa23.97■■□□□ 1.43
SHPK-201ENST00000225519 SUPT5HO00267 1087 aaKnown RBP23.93■■□□□ 1.42
SHPK-201ENST00000225519 HRCP23327 699 aa23.81■■□□□ 1.4
SHPK-201ENST00000225519 PCGF6Q9BYE7 350 aa23.56■■□□□ 1.36
SHPK-201ENST00000225519 PPARGC1BQ86YN6 1023 aaKnown RBP23.39■■□□□ 1.34
SHPK-201ENST00000225519 CHIC1Q5VXU3 224 aa23.26■■□□□ 1.31
SHPK-201ENST00000225519 MYO15BQ96JP2 1530 aa23.19■■□□□ 1.3
SHPK-201ENST00000225519 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
SHPK-201ENST00000225519 PELP1Q8IZL8 1130 aaKnown RBP22.9■■□□□ 1.26
SHPK-201ENST00000225519 LOC105371045A0A1W2PR82 267 aa22.81■■□□□ 1.24
SHPK-201ENST00000225519 TRIM26Q12899 539 aaPredicted RBP22.73■■□□□ 1.23
SHPK-201ENST00000225519 DCAF1Q9Y4B6 1507 aa22.71■■□□□ 1.23
SHPK-201ENST00000225519 ZCCHC6Q5VYS8 1495 aaKnown RBP22.66■■□□□ 1.22
SHPK-201ENST00000225519 ZEB1P37275 1124 aaPredicted RBP22.57■■□□□ 1.2
SHPK-201ENST00000225519 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
SHPK-201ENST00000225519 CCDC180Q9P1Z9 1646 aa22.36■■□□□ 1.17
SHPK-201ENST00000225519 EHMT2Q96KQ7 1210 aa22.19■■□□□ 1.14
SHPK-201ENST00000225519 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
SHPK-201ENST00000225519 TRIM41Q8WV44 630 aa22.09■■□□□ 1.13
SHPK-201ENST00000225519 ACIN1Q9UKV3 1341 aaKnown RBP22■■□□□ 1.11
SHPK-201ENST00000225519 MYT1Q01538 1121 aa21.99■■□□□ 1.11
SHPK-201ENST00000225519 ABCC9O60706 1549 aa21.95■■□□□ 1.1
SHPK-201ENST00000225519 CENPBP07199 599 aaPredicted RBP21.94■■□□□ 1.1
SHPK-201ENST00000225519 NEUROD1Q13562 356 aa21.93■■□□□ 1.1
SHPK-201ENST00000225519 CCER1Q8TC90 406 aaPredicted RBP21.92■■□□□ 1.1
SHPK-201ENST00000225519 GTF3C3Q9Y5Q9 886 aa21.89■■□□□ 1.1
SHPK-201ENST00000225519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.87■■□□□ 1.09
SHPK-201ENST00000225519 DIEXFQ68CQ4 756 aaKnown RBP21.78■■□□□ 1.08
SHPK-201ENST00000225519 TTBK1Q5TCY1 1321 aaPredicted RBP21.63■■□□□ 1.05
SHPK-201ENST00000225519 YTHDC1Q96MU7 727 aaKnown RBP21.58■■□□□ 1.05
SHPK-201ENST00000225519 RSF1Q96T23 1441 aaPredicted RBP21.53■■□□□ 1.04
SHPK-201ENST00000225519 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
SHPK-201ENST00000225519 ZNF316A6NFI3 1004 aaPredicted RBP21.35■■□□□ 1.01
SHPK-201ENST00000225519 SCRIBQ14160 1630 aa21.29■■□□□ 1
SHPK-201ENST00000225519 PABPN1Q86U42 306 aaKnown RBP eCLIP21.22■□□□□ 0.99
SHPK-201ENST00000225519 MIER1Q8N108 512 aa21.17■□□□□ 0.98
SHPK-201ENST00000225519 UBTFP17480 764 aaKnown RBP21.07■□□□□ 0.96
SHPK-201ENST00000225519 HNRNPUL2Q1KMD3 747 aaKnown RBP21.06■□□□□ 0.96
SHPK-201ENST00000225519 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
SHPK-201ENST00000225519 CECR2Q9BXF3 1484 aa20.97■□□□□ 0.95
SHPK-201ENST00000225519 WRNQ14191 1432 aaPredicted RBP eCLIP20.92■□□□□ 0.94
SHPK-201ENST00000225519 MROH2BQ7Z745 1585 aa20.89■□□□□ 0.94
SHPK-201ENST00000225519 APLP2Q06481 763 aa20.83■□□□□ 0.93
SHPK-201ENST00000225519 TNIKQ9UKE5 1360 aa20.81■□□□□ 0.92
SHPK-201ENST00000225519 CSRNP3Q8WYN3 585 aa20.81■□□□□ 0.92
SHPK-201ENST00000225519 WIZO95785 1651 aa20.8■□□□□ 0.92
SHPK-201ENST00000225519 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
SHPK-201ENST00000225519 CCDC88BA6NC98 1476 aa20.76■□□□□ 0.91
SHPK-201ENST00000225519 CLSPNQ9HAW4 1339 aa20.74■□□□□ 0.91
SHPK-201ENST00000225519 SOGA1O94964 1423 aa20.74■□□□□ 0.91
SHPK-201ENST00000225519 ABCC8Q09428 1581 aa20.73■□□□□ 0.91
SHPK-201ENST00000225519 RANGAP1P46060 587 aaPredicted RBP20.72■□□□□ 0.91
SHPK-201ENST00000225519 ANP32EQ9BTT0 268 aa20.68■□□□□ 0.9
SHPK-201ENST00000225519 TSHZ2Q9NRE2 1034 aa20.64■□□□□ 0.89
SHPK-201ENST00000225519 BCANQ96GW7 911 aa20.59■□□□□ 0.89
SHPK-201ENST00000225519 GOLGA3Q08378 1498 aa20.59■□□□□ 0.89
SHPK-201ENST00000225519 BAZ1AQ9NRL2 1556 aaPredicted RBP20.59■□□□□ 0.89
SHPK-201ENST00000225519 EEA1Q15075 1411 aa20.58■□□□□ 0.89
SHPK-201ENST00000225519 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
SHPK-201ENST00000225519 BCL11AQ9H165 835 aa20.55■□□□□ 0.88
SHPK-201ENST00000225519 EIF4G1Q04637 1599 aaKnown RBP20.5■□□□□ 0.87
SHPK-201ENST00000225519 CLIP1P30622 1438 aa20.49■□□□□ 0.87
SHPK-201ENST00000225519 NACADO15069 1562 aa20.45■□□□□ 0.86
SHPK-201ENST00000225519 FKBP8Q14318 412 aa20.41■□□□□ 0.86
SHPK-201ENST00000225519 NEFLP07196 543 aa20.41■□□□□ 0.86
SHPK-201ENST00000225519 TOP2AP11388 1531 aaKnown RBP20.39■□□□□ 0.85
SHPK-201ENST00000225519 VPS8Q8N3P4 1428 aa20.38■□□□□ 0.85
SHPK-201ENST00000225519 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
SHPK-201ENST00000225519 ITGAEP38570 1179 aa20.34■□□□□ 0.85
SHPK-201ENST00000225519 DHX57Q6P158 1386 aaKnown RBP20.34■□□□□ 0.85
SHPK-201ENST00000225519 KCNH8Q96L42 1107 aa20.33■□□□□ 0.84
SHPK-201ENST00000225519 SMARCA2P51531 1590 aa20.31■□□□□ 0.84
SHPK-201ENST00000225519 RBM19Q9Y4C8 960 aaKnown RBP20.22■□□□□ 0.83
SHPK-201ENST00000225519 DDX10Q13206 875 aaKnown RBP20.21■□□□□ 0.83
SHPK-201ENST00000225519 ERICH6Q7L0X2 663 aa20.2■□□□□ 0.82
SHPK-201ENST00000225519 SMARCA4P51532 1647 aa20.16■□□□□ 0.82
SHPK-201ENST00000225519 TRIM52Q96A61 297 aa20.15■□□□□ 0.82
SHPK-201ENST00000225519 RAPGEF2Q9Y4G8 1499 aa20.15■□□□□ 0.82
SHPK-201ENST00000225519 KANK4Q5T7N3 995 aaPredicted RBP20.14■□□□□ 0.81
SHPK-201ENST00000225519 KIF21BO75037 1637 aa20.13■□□□□ 0.81
SHPK-201ENST00000225519 BAZ1BQ9UIG0 1483 aaKnown RBP20.08■□□□□ 0.81
SHPK-201ENST00000225519 ANP32CO43423 234 aa20.05■□□□□ 0.8
SHPK-201ENST00000225519 HIRIP3Q9BW71 556 aaPredicted RBP20.03■□□□□ 0.8
SHPK-201ENST00000225519 SYNJ1O43426 1573 aa20.01■□□□□ 0.79
SHPK-201ENST00000225519 CCNB3Q8WWL7 1395 aa20■□□□□ 0.79
SHPK-201ENST00000225519 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
SHPK-201ENST00000225519 SIN3AQ96ST3 1273 aa19.96■□□□□ 0.79
SHPK-201ENST00000225519 RAB3GAP2Q9H2M9 1393 aa19.93■□□□□ 0.78
SHPK-201ENST00000225519 IRX6P78412 446 aaPredicted RBP19.92■□□□□ 0.78
SHPK-201ENST00000225519 FAM50AQ14320 339 aaKnown RBP19.91■□□□□ 0.78
SHPK-201ENST00000225519 MSH5O43196 834 aa19.91■□□□□ 0.78
SHPK-201ENST00000225519 RRBP1Q9P2E9 1410 aaKnown RBP19.9■□□□□ 0.78
SHPK-201ENST00000225519 CCER2I3L3R5 266 aa19.88■□□□□ 0.77
SHPK-201ENST00000225519 ARAP1Q96P48 1450 aa19.86■□□□□ 0.77
SHPK-201ENST00000225519 DNAJC5BQ9UF47 199 aa19.86■□□□□ 0.77
SHPK-201ENST00000225519 HNRNPUQ00839 825 aaKnown RBP eCLIP19.85■□□□□ 0.77
SHPK-201ENST00000225519 PPP1R15AO75807 674 aaPredicted RBP19.85■□□□□ 0.77
SHPK-201ENST00000225519 ATP1B4Q9UN42 357 aaPredicted RBP19.84■□□□□ 0.77
SHPK-201ENST00000225519 SETD5Q9C0A6 1442 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms