RNA–Protein interactions for RNA: ENST00000223061.5

PCOLCE-201, Transcript of procollagen C-endopeptidase enhancer, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCOLCE, Length 1,702 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCOLCE-201ENST00000223061 NISCHQ9Y2I1 1504 aa35.34■■■■□ 3.25
PCOLCE-201ENST00000223061 CCDC180Q9P1Z9 1646 aa31.28■■■□□ 2.6
PCOLCE-201ENST00000223061 ABCC9O60706 1549 aa30.61■■■□□ 2.49
PCOLCE-201ENST00000223061 DCAF8L2P0C7V8 631 aa29.59■■■□□ 2.33
PCOLCE-201ENST00000223061 ZCCHC6Q5VYS8 1495 aaKnown RBP29.46■■■□□ 2.31
PCOLCE-201ENST00000223061 RB1CC1Q8TDY2 1594 aa29.43■■■□□ 2.3
PCOLCE-201ENST00000223061 NACADO15069 1562 aa29.41■■■□□ 2.3
PCOLCE-201ENST00000223061 MYO15BQ96JP2 1530 aa29.25■■■□□ 2.27
PCOLCE-201ENST00000223061 DCAF1Q9Y4B6 1507 aa29.19■■■□□ 2.26
PCOLCE-201ENST00000223061 UNC13AQ9UPW8 1703 aa28.7■■■□□ 2.18
PCOLCE-201ENST00000223061 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.18
PCOLCE-201ENST00000223061 SCRIBQ14160 1630 aa28.66■■■□□ 2.18
PCOLCE-201ENST00000223061 BICRAQ9NZM4 1560 aa28.54■■■□□ 2.16
PCOLCE-201ENST00000223061 SHROOM4Q9ULL8 1493 aa28.2■■■□□ 2.11
PCOLCE-201ENST00000223061 DNAJC5BQ9UF47 199 aa27.98■■■□□ 2.07
PCOLCE-201ENST00000223061 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
PCOLCE-201ENST00000223061 CC2D2AQ9P2K1 1620 aa27.64■■■□□ 2.02
PCOLCE-201ENST00000223061 CECR2Q9BXF3 1484 aa27.56■■■□□ 2
PCOLCE-201ENST00000223061 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
PCOLCE-201ENST00000223061 BAZ1AQ9NRL2 1556 aaPredicted RBP27.37■■□□□ 1.97
PCOLCE-201ENST00000223061 MROH2BQ7Z745 1585 aa27.26■■□□□ 1.95
PCOLCE-201ENST00000223061 ATAD2BQ9ULI0 1458 aa27.22■■□□□ 1.95
PCOLCE-201ENST00000223061 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
PCOLCE-201ENST00000223061 NCAPD3P42695 1498 aa27.16■■□□□ 1.94
PCOLCE-201ENST00000223061 PEG3Q9GZU2 1588 aa27.07■■□□□ 1.92
PCOLCE-201ENST00000223061 HMGXB3Q12766 1538 aa27.02■■□□□ 1.92
PCOLCE-201ENST00000223061 BAZ1BQ9UIG0 1483 aaKnown RBP27.01■■□□□ 1.91
PCOLCE-201ENST00000223061 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
PCOLCE-201ENST00000223061 WIZO95785 1651 aa26.96■■□□□ 1.91
PCOLCE-201ENST00000223061 TOP2AP11388 1531 aaKnown RBP26.67■■□□□ 1.86
PCOLCE-201ENST00000223061 NESP48681 1621 aa26.52■■□□□ 1.84
PCOLCE-201ENST00000223061 SUPT5HO00267 1087 aaKnown RBP26.51■■□□□ 1.83
PCOLCE-201ENST00000223061 CADPSQ9ULU8 1353 aa26.41■■□□□ 1.82
PCOLCE-201ENST00000223061 LAMC3Q9Y6N6 1575 aa26.4■■□□□ 1.82
PCOLCE-201ENST00000223061 CCDC88BA6NC98 1476 aa26.39■■□□□ 1.81
PCOLCE-201ENST00000223061 ERCC6Q03468 1493 aa26.37■■□□□ 1.81
PCOLCE-201ENST00000223061 PDS5BQ9NTI5 1447 aa26.27■■□□□ 1.8
PCOLCE-201ENST00000223061 CFTRP13569 1480 aa26.26■■□□□ 1.79
PCOLCE-201ENST00000223061 KIF21AQ7Z4S6 1674 aa26.14■■□□□ 1.78
PCOLCE-201ENST00000223061 FANCD2Q9BXW9 1451 aa26.11■■□□□ 1.77
PCOLCE-201ENST00000223061 CEP164Q9UPV0 1460 aa26.06■■□□□ 1.76
PCOLCE-201ENST00000223061 THOC2Q8NI27 1593 aaKnown RBP26.03■■□□□ 1.76
PCOLCE-201ENST00000223061 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
PCOLCE-201ENST00000223061 CUX2O14529 1486 aa25.98■■□□□ 1.75
PCOLCE-201ENST00000223061 PRDM2Q13029 1718 aa25.97■■□□□ 1.75
PCOLCE-201ENST00000223061 WDR62O43379 1518 aa25.87■■□□□ 1.73
PCOLCE-201ENST00000223061 URB2Q14146 1524 aaKnown RBP25.84■■□□□ 1.73
PCOLCE-201ENST00000223061 TOPBP1Q92547 1522 aa25.7■■□□□ 1.7
PCOLCE-201ENST00000223061 ABCC8Q09428 1581 aa25.66■■□□□ 1.7
PCOLCE-201ENST00000223061 DNMBPQ6XZF7 1577 aa25.66■■□□□ 1.7
PCOLCE-201ENST00000223061 CUX1P39880 1505 aa25.57■■□□□ 1.68
PCOLCE-201ENST00000223061 POLA1P09884 1462 aaPredicted RBP25.49■■□□□ 1.67
PCOLCE-201ENST00000223061 IFT140Q96RY7 1462 aa25.49■■□□□ 1.67
PCOLCE-201ENST00000223061 FGD5Q6ZNL6 1462 aa25.47■■□□□ 1.67
PCOLCE-201ENST00000223061 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
PCOLCE-201ENST00000223061 RAD54L2Q9Y4B4 1467 aa25.42■■□□□ 1.66
PCOLCE-201ENST00000223061 SOGA1O94964 1423 aa25.41■■□□□ 1.66
PCOLCE-201ENST00000223061 ZNF608Q9ULD9 1512 aaPredicted RBP25.4■■□□□ 1.66
PCOLCE-201ENST00000223061 SYNJ1O43426 1573 aa25.38■■□□□ 1.65
PCOLCE-201ENST00000223061 TARBP1Q13395 1621 aaKnown RBP25.37■■□□□ 1.65
PCOLCE-201ENST00000223061 TOP2BQ02880 1626 aa25.34■■□□□ 1.65
PCOLCE-201ENST00000223061 BIVM-ERCC5R4GMW8 1640 aa25.32■■□□□ 1.64
PCOLCE-201ENST00000223061 AQRO60306 1485 aaKnown RBP eCLIP25.29■■□□□ 1.644e-7■■■□□ 17.5
PCOLCE-201ENST00000223061 TDRD9Q8NDG6 1382 aaKnown RBP25.28■■□□□ 1.64
PCOLCE-201ENST00000223061 EIF4G3O43432 1585 aaKnown RBP25.27■■□□□ 1.64
PCOLCE-201ENST00000223061 ABCA10Q8WWZ4 1543 aa25.19■■□□□ 1.62
PCOLCE-201ENST00000223061 WDR97A6NE52 1622 aa25.17■■□□□ 1.62
PCOLCE-201ENST00000223061 GAPVD1Q14C86 1478 aa25.1■■□□□ 1.61
PCOLCE-201ENST00000223061 GRIN2BQ13224 1484 aa25.08■■□□□ 1.6
PCOLCE-201ENST00000223061 ABCA5Q8WWZ7 1642 aa25.06■■□□□ 1.6
PCOLCE-201ENST00000223061 DNAJC5Q9H3Z4 198 aa25.06■■□□□ 1.6
PCOLCE-201ENST00000223061 SNAPC4Q5SXM2 1469 aa25.05■■□□□ 1.6
PCOLCE-201ENST00000223061 FBLN2P98095 1184 aa25.01■■□□□ 1.59
PCOLCE-201ENST00000223061 TRIM41Q8WV44 630 aa25■■□□□ 1.59
PCOLCE-201ENST00000223061 PBRM1Q86U86 1689 aa24.99■■□□□ 1.59
PCOLCE-201ENST00000223061 MAGI1Q96QZ7 1491 aaPredicted RBP24.98■■□□□ 1.59
PCOLCE-201ENST00000223061 OSCARQ8IYS5 282 aa24.98■■□□□ 1.59
PCOLCE-201ENST00000223061 CHMP7Q8WUX9 453 aaPredicted RBP24.92■■□□□ 1.58
PCOLCE-201ENST00000223061 KIF27Q86VH2 1401 aa24.92■■□□□ 1.58
PCOLCE-201ENST00000223061 CHD1O14646 1710 aa24.9■■□□□ 1.58
PCOLCE-201ENST00000223061 SYNJ2O15056 1496 aa24.89■■□□□ 1.58
PCOLCE-201ENST00000223061 ERICH3Q5RHP9 1530 aa24.89■■□□□ 1.57
PCOLCE-201ENST00000223061 ADAMTS12P58397 1594 aa24.84■■□□□ 1.57
PCOLCE-201ENST00000223061 FHAD1B1AJZ9 1412 aa24.82■■□□□ 1.56
PCOLCE-201ENST00000223061 IGF1RP08069 1367 aa24.8■■□□□ 1.56
PCOLCE-201ENST00000223061 CHIC1Q5VXU3 224 aa24.78■■□□□ 1.56
PCOLCE-201ENST00000223061 RUSC2Q8N2Y8 1516 aa24.76■■□□□ 1.55
PCOLCE-201ENST00000223061 GRIN2AQ12879 1464 aa24.76■■□□□ 1.55
PCOLCE-201ENST00000223061 CUL7Q14999 1698 aa24.67■■□□□ 1.54
PCOLCE-201ENST00000223061 CARMIL1Q5VZK9 1371 aa24.67■■□□□ 1.54
PCOLCE-201ENST00000223061 CLASP1Q7Z460 1538 aa24.65■■□□□ 1.54
PCOLCE-201ENST00000223061 NUP160Q12769 1436 aa24.63■■□□□ 1.53
PCOLCE-201ENST00000223061 CEP170Q5SW79 1584 aa24.62■■□□□ 1.53
PCOLCE-201ENST00000223061 ARHGEF11O15085 1522 aa24.55■■□□□ 1.52
PCOLCE-201ENST00000223061 FAM9AQ8IZU1 332 aaPredicted RBP24.54■■□□□ 1.52
PCOLCE-201ENST00000223061 RIMBP3CA6NJZ7 1639 aa24.53■■□□□ 1.52
PCOLCE-201ENST00000223061 RIMBP3BA6NNM3 1639 aa24.53■■□□□ 1.52
PCOLCE-201ENST00000223061 RIMBP3Q9UFD9 1639 aa24.53■■□□□ 1.52
PCOLCE-201ENST00000223061 RAPGEF2Q9Y4G8 1499 aa24.52■■□□□ 1.51
PCOLCE-201ENST00000223061 EEA1Q15075 1411 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms