RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
USP11-201ENST00000218348 CCDC180Q9P1Z9 1646 aa19.98■□□□□ 0.79
USP11-201ENST00000218348 ZCCHC6Q5VYS8 1495 aaKnown RBP18.91■□□□□ 0.62
USP11-201ENST00000218348 ABCC9O60706 1549 aa18.88■□□□□ 0.61
USP11-201ENST00000218348 DCAF1Q9Y4B6 1507 aa18.76■□□□□ 0.59
USP11-201ENST00000218348 MYO15BQ96JP2 1530 aa18.72■□□□□ 0.59
USP11-201ENST00000218348 NACADO15069 1562 aa18.57■□□□□ 0.56
USP11-201ENST00000218348 RB1CC1Q8TDY2 1594 aa18.44■□□□□ 0.54
USP11-201ENST00000218348 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
USP11-201ENST00000218348 SHROOM4Q9ULL8 1493 aa18.16■□□□□ 0.5
USP11-201ENST00000218348 DCAF8L2P0C7V8 631 aa18.11■□□□□ 0.49
USP11-201ENST00000218348 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
USP11-201ENST00000218348 SCRIBQ14160 1630 aa18.08■□□□□ 0.49
USP11-201ENST00000218348 SUPT5HO00267 1087 aaKnown RBP17.69■□□□□ 0.42
USP11-201ENST00000218348 PABPN1Q86U42 306 aaKnown RBP eCLIP17.6■□□□□ 0.41
USP11-201ENST00000218348 CECR2Q9BXF3 1484 aa17.48■□□□□ 0.39
USP11-201ENST00000218348 EIF4G1Q04637 1599 aaKnown RBP17.44■□□□□ 0.38
USP11-201ENST00000218348 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
USP11-201ENST00000218348 PEG3Q9GZU2 1588 aa17.38■□□□□ 0.37
USP11-201ENST00000218348 BAZ1AQ9NRL2 1556 aaPredicted RBP17.38■□□□□ 0.37
USP11-201ENST00000218348 MROH2BQ7Z745 1585 aa17.37■□□□□ 0.37
USP11-201ENST00000218348 CC2D2AQ9P2K1 1620 aa17.27■□□□□ 0.36
USP11-201ENST00000218348 RSF1Q96T23 1441 aaPredicted RBP17.26■□□□□ 0.35
USP11-201ENST00000218348 WIZO95785 1651 aa17.22■□□□□ 0.35
USP11-201ENST00000218348 ATAD2BQ9ULI0 1458 aa17.17■□□□□ 0.34
USP11-201ENST00000218348 HMGXB3Q12766 1538 aa17.14■□□□□ 0.33
USP11-201ENST00000218348 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
USP11-201ENST00000218348 NCAPD3P42695 1498 aa17.13■□□□□ 0.33
USP11-201ENST00000218348 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
USP11-201ENST00000218348 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
USP11-201ENST00000218348 BAZ1BQ9UIG0 1483 aaKnown RBP16.94■□□□□ 0.3
USP11-201ENST00000218348 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
USP11-201ENST00000218348 CCDC88BA6NC98 1476 aa16.79■□□□□ 0.28
USP11-201ENST00000218348 PRDM2Q13029 1718 aa16.72■□□□□ 0.27
USP11-201ENST00000218348 CFTRP13569 1480 aa16.63■□□□□ 0.25
USP11-201ENST00000218348 LAMC3Q9Y6N6 1575 aa16.62■□□□□ 0.25
USP11-201ENST00000218348 NESP48681 1621 aa16.57■□□□□ 0.24
USP11-201ENST00000218348 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
USP11-201ENST00000218348 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.24
USP11-201ENST00000218348 LOC105371045A0A1W2PR82 267 aa16.51■□□□□ 0.23
USP11-201ENST00000218348 KIF21AQ7Z4S6 1674 aa16.5■□□□□ 0.23
USP11-201ENST00000218348 FAM9AQ8IZU1 332 aaPredicted RBP16.45■□□□□ 0.22
USP11-201ENST00000218348 THOC2Q8NI27 1593 aaKnown RBP16.41■□□□□ 0.22
USP11-201ENST00000218348 FANCD2Q9BXW9 1451 aa16.36■□□□□ 0.21
USP11-201ENST00000218348 TRIM41Q8WV44 630 aa16.35■□□□□ 0.21
USP11-201ENST00000218348 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
USP11-201ENST00000218348 PDS5BQ9NTI5 1447 aa16.3■□□□□ 0.2
USP11-201ENST00000218348 WDR62O43379 1518 aa16.3■□□□□ 0.2
USP11-201ENST00000218348 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
USP11-201ENST00000218348 ABCC8Q09428 1581 aa16.28■□□□□ 0.2
USP11-201ENST00000218348 CUX1P39880 1505 aa16.28■□□□□ 0.2
USP11-201ENST00000218348 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
USP11-201ENST00000218348 CEP164Q9UPV0 1460 aa16.27■□□□□ 0.2
USP11-201ENST00000218348 TOP2BQ02880 1626 aa16.26■□□□□ 0.19
USP11-201ENST00000218348 DNMBPQ6XZF7 1577 aa16.24■□□□□ 0.19
USP11-201ENST00000218348 MRC2Q9UBG0 1479 aa16.23■□□□□ 0.19
USP11-201ENST00000218348 TOPBP1Q92547 1522 aa16.21■□□□□ 0.18
USP11-201ENST00000218348 PCGF6Q9BYE7 350 aa16.2■□□□□ 0.18
USP11-201ENST00000218348 WDR97A6NE52 1622 aa16.2■□□□□ 0.18
USP11-201ENST00000218348 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
USP11-201ENST00000218348 TARBP1Q13395 1621 aaKnown RBP16.15■□□□□ 0.18
USP11-201ENST00000218348 WRNQ14191 1432 aaPredicted RBP eCLIP16.15■□□□□ 0.18
USP11-201ENST00000218348 CUX2O14529 1486 aa16.13■□□□□ 0.17
USP11-201ENST00000218348 ERCC6Q03468 1493 aa16.12■□□□□ 0.17
USP11-201ENST00000218348 POLA1P09884 1462 aaPredicted RBP16.09■□□□□ 0.17
USP11-201ENST00000218348 FGD5Q6ZNL6 1462 aa16.07■□□□□ 0.16
USP11-201ENST00000218348 ABCA5Q8WWZ7 1642 aa16.02■□□□□ 0.15
USP11-201ENST00000218348 ABCA10Q8WWZ4 1543 aa16■□□□□ 0.15
USP11-201ENST00000218348 PPARGC1BQ86YN6 1023 aaKnown RBP15.98■□□□□ 0.15
USP11-201ENST00000218348 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
USP11-201ENST00000218348 IFT140Q96RY7 1462 aa15.95■□□□□ 0.14
USP11-201ENST00000218348 EIF4G3O43432 1585 aaKnown RBP15.93■□□□□ 0.14
USP11-201ENST00000218348 ZNF608Q9ULD9 1512 aaPredicted RBP15.91■□□□□ 0.14
USP11-201ENST00000218348 PBRM1Q86U86 1689 aa15.9■□□□□ 0.14
USP11-201ENST00000218348 SOGA1O94964 1423 aa15.89■□□□□ 0.13
USP11-201ENST00000218348 RUSC2Q8N2Y8 1516 aa15.86■□□□□ 0.13
USP11-201ENST00000218348 TTBK1Q5TCY1 1321 aaPredicted RBP15.86■□□□□ 0.13
USP11-201ENST00000218348 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
USP11-201ENST00000218348 AQRO60306 1485 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP11-201ENST00000218348 MYT1Q01538 1121 aa15.77■□□□□ 0.12
USP11-201ENST00000218348 ADAMTS12P58397 1594 aa15.77■□□□□ 0.11
USP11-201ENST00000218348 HRCP23327 699 aa15.76■□□□□ 0.11
USP11-201ENST00000218348 GAPVD1Q14C86 1478 aa15.76■□□□□ 0.11
USP11-201ENST00000218348 CUL7Q14999 1698 aa15.75■□□□□ 0.11
USP11-201ENST00000218348 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
USP11-201ENST00000218348 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
USP11-201ENST00000218348 TRIM26Q12899 539 aaPredicted RBP15.73■□□□□ 0.11
USP11-201ENST00000218348 KIF27Q86VH2 1401 aa15.72■□□□□ 0.11
USP11-201ENST00000218348 IGF1RP08069 1367 aa15.72■□□□□ 0.11
USP11-201ENST00000218348 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
USP11-201ENST00000218348 PRXQ9BXM0 1461 aa15.71■□□□□ 0.11
USP11-201ENST00000218348 EEA1Q15075 1411 aa15.7■□□□□ 0.1
USP11-201ENST00000218348 UBTFP17480 764 aaKnown RBP15.7■□□□□ 0.1
USP11-201ENST00000218348 KIF21BO75037 1637 aa15.69■□□□□ 0.1
USP11-201ENST00000218348 MAGI1Q96QZ7 1491 aaPredicted RBP15.69■□□□□ 0.1
USP11-201ENST00000218348 SNAPC4Q5SXM2 1469 aa15.67■□□□□ 0.1
USP11-201ENST00000218348 CHD1O14646 1710 aa15.67■□□□□ 0.1
USP11-201ENST00000218348 SYNJ2O15056 1496 aa15.61■□□□□ 0.09
USP11-201ENST00000218348 FHAD1B1AJZ9 1412 aa15.6■□□□□ 0.09
USP11-201ENST00000218348 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms