RNA–Protein interactions for RNA: ENST00000215829.7

SNRPD3-201, Transcript of small nuclear ribonucleoprotein D3 polypeptide, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRPD3, Length 1,763 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD3-201ENST00000215829 NISCHQ9Y2I1 1504 aa36.86■■■■□ 3.49
SNRPD3-201ENST00000215829 CCDC180Q9P1Z9 1646 aa32.29■■■□□ 2.76
SNRPD3-201ENST00000215829 ZCCHC6Q5VYS8 1495 aaKnown RBP30.88■■■□□ 2.53
SNRPD3-201ENST00000215829 ABCC9O60706 1549 aa30.78■■■□□ 2.52
SNRPD3-201ENST00000215829 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.48
SNRPD3-201ENST00000215829 DCAF1Q9Y4B6 1507 aa30.51■■■□□ 2.47
SNRPD3-201ENST00000215829 MYO15BQ96JP2 1530 aa30.28■■■□□ 2.44
SNRPD3-201ENST00000215829 NACADO15069 1562 aa30.17■■■□□ 2.42
SNRPD3-201ENST00000215829 RB1CC1Q8TDY2 1594 aa29.98■■■□□ 2.39
SNRPD3-201ENST00000215829 SHROOM4Q9ULL8 1493 aa29.77■■■□□ 2.36
SNRPD3-201ENST00000215829 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
SNRPD3-201ENST00000215829 UNC13AQ9UPW8 1703 aa29.33■■■□□ 2.29
SNRPD3-201ENST00000215829 BICRAQ9NZM4 1560 aa29.06■■■□□ 2.24
SNRPD3-201ENST00000215829 PABPN1Q86U42 306 aaKnown RBP eCLIP28.98■■■□□ 2.23
SNRPD3-201ENST00000215829 CECR2Q9BXF3 1484 aa28.64■■■□□ 2.18
SNRPD3-201ENST00000215829 SUPT5HO00267 1087 aaKnown RBP28.51■■■□□ 2.15
SNRPD3-201ENST00000215829 BAZ1AQ9NRL2 1556 aaPredicted RBP28.49■■■□□ 2.15
SNRPD3-201ENST00000215829 RSF1Q96T23 1441 aaPredicted RBP28.46■■■□□ 2.15
SNRPD3-201ENST00000215829 MROH2BQ7Z745 1585 aa28.44■■■□□ 2.14
SNRPD3-201ENST00000215829 SMARCA4P51532 1647 aa28.39■■■□□ 2.14
SNRPD3-201ENST00000215829 EIF4G1Q04637 1599 aaKnown RBP28.21■■■□□ 2.11
SNRPD3-201ENST00000215829 WIZO95785 1651 aa28.19■■■□□ 2.1
SNRPD3-201ENST00000215829 PEG3Q9GZU2 1588 aa28.09■■■□□ 2.09
SNRPD3-201ENST00000215829 ATAD2BQ9ULI0 1458 aa28.02■■■□□ 2.08
SNRPD3-201ENST00000215829 SMARCA2P51531 1590 aa28■■■□□ 2.07
SNRPD3-201ENST00000215829 TOP2AP11388 1531 aaKnown RBP27.9■■■□□ 2.06
SNRPD3-201ENST00000215829 CC2D2AQ9P2K1 1620 aa27.87■■■□□ 2.05
SNRPD3-201ENST00000215829 NCAPD3P42695 1498 aa27.85■■■□□ 2.05
SNRPD3-201ENST00000215829 BAZ1BQ9UIG0 1483 aaKnown RBP27.83■■■□□ 2.05
SNRPD3-201ENST00000215829 HMGXB3Q12766 1538 aa27.76■■■□□ 2.04
SNRPD3-201ENST00000215829 CCDC88BA6NC98 1476 aa27.62■■■□□ 2.01
SNRPD3-201ENST00000215829 DNAJC5BQ9UF47 199 aa27.47■■□□□ 1.99
SNRPD3-201ENST00000215829 CHIC1Q5VXU3 224 aa27.14■■□□□ 1.94
SNRPD3-201ENST00000215829 CFTRP13569 1480 aa27.13■■□□□ 1.93
SNRPD3-201ENST00000215829 CADPSQ9ULU8 1353 aa27.11■■□□□ 1.93
SNRPD3-201ENST00000215829 PRDM2Q13029 1718 aa26.96■■□□□ 1.91
SNRPD3-201ENST00000215829 LAMC3Q9Y6N6 1575 aa26.95■■□□□ 1.9
SNRPD3-201ENST00000215829 NESP48681 1621 aa26.93■■□□□ 1.9
SNRPD3-201ENST00000215829 ABCC8Q09428 1581 aa26.89■■□□□ 1.89
SNRPD3-201ENST00000215829 TRIM41Q8WV44 630 aa26.86■■□□□ 1.89
SNRPD3-201ENST00000215829 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
SNRPD3-201ENST00000215829 FANCD2Q9BXW9 1451 aa26.79■■□□□ 1.88
SNRPD3-201ENST00000215829 PDS5BQ9NTI5 1447 aa26.76■■□□□ 1.87
SNRPD3-201ENST00000215829 SYNJ1O43426 1573 aa26.68■■□□□ 1.86
SNRPD3-201ENST00000215829 CEP164Q9UPV0 1460 aa26.64■■□□□ 1.86
SNRPD3-201ENST00000215829 TOP2BQ02880 1626 aa26.62■■□□□ 1.85
SNRPD3-201ENST00000215829 CUX1P39880 1505 aa26.62■■□□□ 1.85
SNRPD3-201ENST00000215829 KIF21AQ7Z4S6 1674 aa26.6■■□□□ 1.85
SNRPD3-201ENST00000215829 BIVM-ERCC5R4GMW8 1640 aa26.6■■□□□ 1.85
SNRPD3-201ENST00000215829 DNMBPQ6XZF7 1577 aa26.49■■□□□ 1.83
SNRPD3-201ENST00000215829 URB2Q14146 1524 aaKnown RBP26.46■■□□□ 1.83
SNRPD3-201ENST00000215829 TOPBP1Q92547 1522 aa26.46■■□□□ 1.83
SNRPD3-201ENST00000215829 ERCC6Q03468 1493 aa26.44■■□□□ 1.82
SNRPD3-201ENST00000215829 MRC2Q9UBG0 1479 aa26.41■■□□□ 1.82
SNRPD3-201ENST00000215829 FGD5Q6ZNL6 1462 aa26.38■■□□□ 1.81
SNRPD3-201ENST00000215829 SOGA1O94964 1423 aa26.34■■□□□ 1.81
SNRPD3-201ENST00000215829 FAM9AQ8IZU1 332 aaPredicted RBP26.31■■□□□ 1.8
SNRPD3-201ENST00000215829 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
SNRPD3-201ENST00000215829 WDR62O43379 1518 aa26.29■■□□□ 1.8
SNRPD3-201ENST00000215829 EEA1Q15075 1411 aa26.27■■□□□ 1.8
SNRPD3-201ENST00000215829 THOC2Q8NI27 1593 aaKnown RBP26.26■■□□□ 1.79
SNRPD3-201ENST00000215829 RUSC2Q8N2Y8 1516 aa26.26■■□□□ 1.79
SNRPD3-201ENST00000215829 RAD54L2Q9Y4B4 1467 aa26.2■■□□□ 1.79
SNRPD3-201ENST00000215829 KIF27Q86VH2 1401 aa26.16■■□□□ 1.78
SNRPD3-201ENST00000215829 ABCA10Q8WWZ4 1543 aa26.16■■□□□ 1.78
SNRPD3-201ENST00000215829 CSRNP3Q8WYN3 585 aa26.15■■□□□ 1.78
SNRPD3-201ENST00000215829 CUX2O14529 1486 aa26.15■■□□□ 1.78
SNRPD3-201ENST00000215829 TARBP1Q13395 1621 aaKnown RBP26.09■■□□□ 1.77
SNRPD3-201ENST00000215829 LOC105371045A0A1W2PR82 267 aa26.08■■□□□ 1.77
SNRPD3-201ENST00000215829 WDR97A6NE52 1622 aa26.08■■□□□ 1.77
SNRPD3-201ENST00000215829 IFT140Q96RY7 1462 aa26.05■■□□□ 1.76
SNRPD3-201ENST00000215829 TDRD9Q8NDG6 1382 aaKnown RBP25.98■■□□□ 1.75
SNRPD3-201ENST00000215829 IGF1RP08069 1367 aa25.97■■□□□ 1.75
SNRPD3-201ENST00000215829 ABCA5Q8WWZ7 1642 aa25.95■■□□□ 1.75
SNRPD3-201ENST00000215829 GAPVD1Q14C86 1478 aa25.93■■□□□ 1.74
SNRPD3-201ENST00000215829 EHMT2Q96KQ7 1210 aa25.92■■□□□ 1.74
SNRPD3-201ENST00000215829 KIF21BO75037 1637 aa25.91■■□□□ 1.74
SNRPD3-201ENST00000215829 PRXQ9BXM0 1461 aa25.9■■□□□ 1.74
SNRPD3-201ENST00000215829 ZNF608Q9ULD9 1512 aaPredicted RBP25.89■■□□□ 1.74
SNRPD3-201ENST00000215829 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.732e-6■■■□□ 18.1
SNRPD3-201ENST00000215829 GOLGA3Q08378 1498 aa25.86■■□□□ 1.73
SNRPD3-201ENST00000215829 ERICH3Q5RHP9 1530 aa25.85■■□□□ 1.73
SNRPD3-201ENST00000215829 CARMIL1Q5VZK9 1371 aa25.83■■□□□ 1.73
SNRPD3-201ENST00000215829 RAPGEF2Q9Y4G8 1499 aa25.82■■□□□ 1.72
SNRPD3-201ENST00000215829 EIF4G3O43432 1585 aaKnown RBP25.79■■□□□ 1.72
SNRPD3-201ENST00000215829 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
SNRPD3-201ENST00000215829 CUL7Q14999 1698 aa25.79■■□□□ 1.72
SNRPD3-201ENST00000215829 PBRM1Q86U86 1689 aa25.79■■□□□ 1.72
SNRPD3-201ENST00000215829 UBTFP17480 764 aaKnown RBP25.77■■□□□ 1.72
SNRPD3-201ENST00000215829 TNIKQ9UKE5 1360 aa25.74■■□□□ 1.71
SNRPD3-201ENST00000215829 FHAD1B1AJZ9 1412 aa25.66■■□□□ 1.7
SNRPD3-201ENST00000215829 ADAMTS12P58397 1594 aa25.63■■□□□ 1.69
SNRPD3-201ENST00000215829 SNAPC4Q5SXM2 1469 aa25.63■■□□□ 1.69
SNRPD3-201ENST00000215829 MAGI1Q96QZ7 1491 aaPredicted RBP25.61■■□□□ 1.69
SNRPD3-201ENST00000215829 CEP162Q5TB80 1403 aa25.54■■□□□ 1.68
SNRPD3-201ENST00000215829 SYNJ2O15056 1496 aa25.51■■□□□ 1.67
SNRPD3-201ENST00000215829 CHMP7Q8WUX9 453 aaPredicted RBP25.47■■□□□ 1.67
SNRPD3-201ENST00000215829 GRIN2AQ12879 1464 aa25.46■■□□□ 1.67
SNRPD3-201ENST00000215829 CLIP1P30622 1438 aa25.43■■□□□ 1.66
SNRPD3-201ENST00000215829 CTTNBP2Q8WZ74 1663 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms