RNA–Protein interactions for RNA: ENST00000199706.12

MRPL28-201, Transcript of mitochondrial ribosomal protein L28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPL28, Length 1,098 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-201ENST00000199706 NISCHQ9Y2I1 1504 aa42.58■■■■■ 4.41
MRPL28-201ENST00000199706 CCDC180Q9P1Z9 1646 aa38.01■■■■□ 3.67
MRPL28-201ENST00000199706 ABCC9O60706 1549 aa36.92■■■■□ 3.5
MRPL28-201ENST00000199706 RB1CC1Q8TDY2 1594 aa35.69■■■■□ 3.3
MRPL28-201ENST00000199706 NACADO15069 1562 aa35.68■■■■□ 3.3
MRPL28-201ENST00000199706 MYO15BQ96JP2 1530 aa35.58■■■■□ 3.29
MRPL28-201ENST00000199706 ZCCHC6Q5VYS8 1495 aaKnown RBP35.5■■■■□ 3.27
MRPL28-201ENST00000199706 DCAF1Q9Y4B6 1507 aa35.38■■■■□ 3.25
MRPL28-201ENST00000199706 DCAF8L2P0C7V8 631 aa35.23■■■■□ 3.23
MRPL28-201ENST00000199706 UNC13AQ9UPW8 1703 aa34.86■■■■□ 3.17
MRPL28-201ENST00000199706 BICRAQ9NZM4 1560 aa34.58■■■■□ 3.13
MRPL28-201ENST00000199706 SCRIBQ14160 1630 aa34.45■■■■□ 3.11
MRPL28-201ENST00000199706 SHROOM4Q9ULL8 1493 aa34.43■■■■□ 3.1
MRPL28-201ENST00000199706 PABPN1Q86U42 306 aaKnown RBP eCLIP34.39■■■■□ 3.15e-7■■■■■ 28.2
MRPL28-201ENST00000199706 DNAJC5BQ9UF47 199 aa33.83■■■■□ 3.01
MRPL28-201ENST00000199706 EIF4G1Q04637 1599 aaKnown RBP33.67■■■□□ 2.98
MRPL28-201ENST00000199706 CC2D2AQ9P2K1 1620 aa33.5■■■□□ 2.95
MRPL28-201ENST00000199706 CECR2Q9BXF3 1484 aa33.25■■■□□ 2.91
MRPL28-201ENST00000199706 SMARCA4P51532 1647 aa33.06■■■□□ 2.88
MRPL28-201ENST00000199706 BAZ1AQ9NRL2 1556 aaPredicted RBP33.04■■■□□ 2.88
MRPL28-201ENST00000199706 NCAPD3P42695 1498 aa32.9■■■□□ 2.86
MRPL28-201ENST00000199706 SMARCA2P51531 1590 aa32.89■■■□□ 2.86
MRPL28-201ENST00000199706 ATAD2BQ9ULI0 1458 aa32.86■■■□□ 2.85
MRPL28-201ENST00000199706 PEG3Q9GZU2 1588 aa32.84■■■□□ 2.85
MRPL28-201ENST00000199706 HMGXB3Q12766 1538 aa32.79■■■□□ 2.84
MRPL28-201ENST00000199706 MROH2BQ7Z745 1585 aa32.75■■■□□ 2.83
MRPL28-201ENST00000199706 BAZ1BQ9UIG0 1483 aaKnown RBP32.57■■■□□ 2.8
MRPL28-201ENST00000199706 WIZO95785 1651 aa32.38■■■□□ 2.77
MRPL28-201ENST00000199706 RSF1Q96T23 1441 aaPredicted RBP32.38■■■□□ 2.77
MRPL28-201ENST00000199706 TOP2AP11388 1531 aaKnown RBP32.14■■■□□ 2.74
MRPL28-201ENST00000199706 LAMC3Q9Y6N6 1575 aa32.06■■■□□ 2.72
MRPL28-201ENST00000199706 NESP48681 1621 aa31.95■■■□□ 2.71
MRPL28-201ENST00000199706 ERCC6Q03468 1493 aa31.87■■■□□ 2.69
MRPL28-201ENST00000199706 CADPSQ9ULU8 1353 aa31.87■■■□□ 2.69
MRPL28-201ENST00000199706 PDS5BQ9NTI5 1447 aa31.78■■■□□ 2.68
MRPL28-201ENST00000199706 CFTRP13569 1480 aa31.72■■■□□ 2.67
MRPL28-201ENST00000199706 CUX2O14529 1486 aa31.69■■■□□ 2.66
MRPL28-201ENST00000199706 KIF21AQ7Z4S6 1674 aa31.67■■■□□ 2.66
MRPL28-201ENST00000199706 CCDC88BA6NC98 1476 aa31.66■■■□□ 2.66
MRPL28-201ENST00000199706 THOC2Q8NI27 1593 aaKnown RBP31.63■■■□□ 2.65
MRPL28-201ENST00000199706 PRDM2Q13029 1718 aa31.58■■■□□ 2.65
MRPL28-201ENST00000199706 FANCD2Q9BXW9 1451 aa31.49■■■□□ 2.63
MRPL28-201ENST00000199706 CEP164Q9UPV0 1460 aa31.48■■■□□ 2.63
MRPL28-201ENST00000199706 MRC2Q9UBG0 1479 aa31.46■■■□□ 2.63
MRPL28-201ENST00000199706 WDR62O43379 1518 aa31.4■■■□□ 2.62
MRPL28-201ENST00000199706 SUPT5HO00267 1087 aaKnown RBP31.29■■■□□ 2.6
MRPL28-201ENST00000199706 URB2Q14146 1524 aaKnown RBP31.18■■■□□ 2.58
MRPL28-201ENST00000199706 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
MRPL28-201ENST00000199706 DNMBPQ6XZF7 1577 aa31.01■■■□□ 2.56
MRPL28-201ENST00000199706 TOPBP1Q92547 1522 aa31■■■□□ 2.55
MRPL28-201ENST00000199706 IFT140Q96RY7 1462 aa30.85■■■□□ 2.53
MRPL28-201ENST00000199706 CUX1P39880 1505 aa30.75■■■□□ 2.51
MRPL28-201ENST00000199706 POLA1P09884 1462 aaPredicted RBP30.74■■■□□ 2.51
MRPL28-201ENST00000199706 TARBP1Q13395 1621 aaKnown RBP30.71■■■□□ 2.51
MRPL28-201ENST00000199706 FGD5Q6ZNL6 1462 aa30.63■■■□□ 2.49
MRPL28-201ENST00000199706 WDR97A6NE52 1622 aa30.62■■■□□ 2.49
MRPL28-201ENST00000199706 DNAJC5Q9H3Z4 198 aa30.6■■■□□ 2.49
MRPL28-201ENST00000199706 ZNF608Q9ULD9 1512 aaPredicted RBP30.6■■■□□ 2.49
MRPL28-201ENST00000199706 EIF4G3O43432 1585 aaKnown RBP30.58■■■□□ 2.49
MRPL28-201ENST00000199706 BIVM-ERCC5R4GMW8 1640 aa30.56■■■□□ 2.48
MRPL28-201ENST00000199706 SOGA1O94964 1423 aa30.56■■■□□ 2.48
MRPL28-201ENST00000199706 TOP2BQ02880 1626 aa30.55■■■□□ 2.48
MRPL28-201ENST00000199706 WRNQ14191 1432 aaPredicted RBP eCLIP30.54■■■□□ 2.48
MRPL28-201ENST00000199706 RAD54L2Q9Y4B4 1467 aa30.5■■■□□ 2.47
MRPL28-201ENST00000199706 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
MRPL28-201ENST00000199706 ABCA10Q8WWZ4 1543 aa30.42■■■□□ 2.46
MRPL28-201ENST00000199706 AQRO60306 1485 aaKnown RBP eCLIP30.4■■■□□ 2.464e-7■■■■■ 27.1
MRPL28-201ENST00000199706 TDRD9Q8NDG6 1382 aaKnown RBP30.32■■■□□ 2.44
MRPL28-201ENST00000199706 ABCA5Q8WWZ7 1642 aa30.31■■■□□ 2.44
MRPL28-201ENST00000199706 GRIN2BQ13224 1484 aa30.27■■■□□ 2.44
MRPL28-201ENST00000199706 GAPVD1Q14C86 1478 aa30.25■■■□□ 2.43
MRPL28-201ENST00000199706 MAGI1Q96QZ7 1491 aaPredicted RBP30.25■■■□□ 2.43
MRPL28-201ENST00000199706 PBRM1Q86U86 1689 aa30.23■■■□□ 2.43
MRPL28-201ENST00000199706 OSCARQ8IYS5 282 aa30.21■■■□□ 2.43
MRPL28-201ENST00000199706 SNAPC4Q5SXM2 1469 aa30.19■■■□□ 2.42
MRPL28-201ENST00000199706 CHD1O14646 1710 aa30.17■■■□□ 2.42
MRPL28-201ENST00000199706 SYNJ2O15056 1496 aa30.1■■■□□ 2.41
MRPL28-201ENST00000199706 ERICH3Q5RHP9 1530 aa30.07■■■□□ 2.4
MRPL28-201ENST00000199706 ADAMTS12P58397 1594 aa30.01■■■□□ 2.39
MRPL28-201ENST00000199706 CHMP7Q8WUX9 453 aaPredicted RBP29.94■■■□□ 2.38
MRPL28-201ENST00000199706 FHAD1B1AJZ9 1412 aa29.92■■■□□ 2.38
MRPL28-201ENST00000199706 FBLN2P98095 1184 aa29.92■■■□□ 2.38
MRPL28-201ENST00000199706 KIF27Q86VH2 1401 aa29.92■■■□□ 2.38
MRPL28-201ENST00000199706 CLASP1Q7Z460 1538 aa29.91■■■□□ 2.38
MRPL28-201ENST00000199706 GRIN2AQ12879 1464 aa29.88■■■□□ 2.37
MRPL28-201ENST00000199706 CUL7Q14999 1698 aa29.81■■■□□ 2.36
MRPL28-201ENST00000199706 ARHGEF11O15085 1522 aa29.8■■■□□ 2.36
MRPL28-201ENST00000199706 RIMBP3CA6NJZ7 1639 aa29.79■■■□□ 2.36
MRPL28-201ENST00000199706 RIMBP3BA6NNM3 1639 aa29.79■■■□□ 2.36
MRPL28-201ENST00000199706 RIMBP3Q9UFD9 1639 aa29.79■■■□□ 2.36
MRPL28-201ENST00000199706 NUP160Q12769 1436 aa29.79■■■□□ 2.36
MRPL28-201ENST00000199706 IGF1RP08069 1367 aa29.76■■■□□ 2.35
MRPL28-201ENST00000199706 CEP170Q5SW79 1584 aa29.71■■■□□ 2.35
MRPL28-201ENST00000199706 TRIM41Q8WV44 630 aa29.66■■■□□ 2.34
MRPL28-201ENST00000199706 SHROOM2Q13796 1616 aa29.6■■■□□ 2.33
MRPL28-201ENST00000199706 RUSC2Q8N2Y8 1516 aa29.57■■■□□ 2.32
MRPL28-201ENST00000199706 CARMIL1Q5VZK9 1371 aa29.57■■■□□ 2.32
MRPL28-201ENST00000199706 ARAP1Q96P48 1450 aa29.55■■■□□ 2.32
MRPL28-201ENST00000199706 KIAA0586Q9BVV6 1533 aa29.47■■■□□ 2.31
MRPL28-201ENST00000199706 RAPGEF2Q9Y4G8 1499 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms