RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 TMEM102Q8N9M5 508 aaPredicted RBP17.71■□□□□ 0.43
SMPD3-211ENST00000568373 OR2T34Q8NGX1 318 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 OR2T3Q8NH03 318 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 DNAJB14Q8TBM8 379 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 OR8D1Q8WZ84 308 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 SLCO4A1Q96BD0 722 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 BTBD9Q96Q07 612 aa17.71■□□□□ 0.43
SMPD3-211ENST00000568373 EIF3LQ9Y262 564 aaKnown RBP17.71■□□□□ 0.43
SMPD3-211ENST00000568373 MUC22E2RYF6 1773 aaPredicted RBP17.71■□□□□ 0.43
SMPD3-211ENST00000568373 TMEM202A6NGA9 273 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 IFRD1O00458 451 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TSPAN6O43657 245 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 UQCRBP14927 111 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 ATP6V1B2P21281 511 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 GNPDA1P46926 289 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 CTSCP53634 463 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 CPSF6Q16630 551 aaKnown RBP eCLIP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TICAM1Q8IUC6 712 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 KIAA2013Q8IYS2 634 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 RGL4Q8IZJ4 473 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TMIEQ8NEW7 156 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 DTD2Q96FN9 168 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 COQ10AQ96MF6 247 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TRIM15Q9C019 465 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 SLAMF8Q9P0V8 285 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 ZNHIT2Q9UHR6 403 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 ATG13O75143 517 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 SMNDC1O75940 238 aaKnown RBP eCLIP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 GSTM1P09488 218 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 GRIA3P42263 894 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 PRLHRP49683 370 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 GSTM4Q03013 218 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TMEM115Q12893 351 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 KCNC3Q14003 757 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 ELAVL3Q14576 367 aaKnown RBP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 RABL3Q5HYI8 236 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 IRAK1BP1Q5VVH5 260 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 NEK5Q6P3R8 708 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 SLC2A7Q6PXP3 512 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 CYP2U1Q7Z449 544 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 ST13P5Q8NFI4 369 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 PIP4K2CQ8TBX8 421 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 PYCR2Q96C36 320 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 TRIM8Q9BZR9 551 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 LRTM1Q9HBL6 345 aa17.7■□□□□ 0.42
SMPD3-211ENST00000568373 YBX2Q9Y2T7 364 aaKnown RBP17.7■□□□□ 0.42
SMPD3-211ENST00000568373 C15orf38-AP3S2A0A0A6YYH1 394 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 MAGEA13PA6NCF6 341 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ARNTLO00327 626 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 RSL1D1O76021 490 aaKnown RBP17.69■□□□□ 0.42
SMPD3-211ENST00000568373 VARSP26640 1264 aaKnown RBP17.69■□□□□ 0.42
SMPD3-211ENST00000568373 SYTL3Q4VX76 610 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 LCN8Q6JVE9 175 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 TMEM154Q6P9G4 183 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 GET4Q7L5D6 327 aaPredicted RBP17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ARPINQ7Z6K5 226 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ARRDC3Q96B67 414 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ALG2Q9H553 416 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 INTS7Q9NVH2 962 aaKnown RBP17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ASIC5Q9NY37 505 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 OBP2AQ9NY56 170 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 GDE1Q9NZC3 331 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ACTR3BQ9P1U1 418 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 FAM8A1Q9UBU6 413 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 LRRK1Q38SD2 2015 aa17.69■□□□□ 0.42
SMPD3-211ENST00000568373 ZFC3H1O60293 1989 aaKnown RBP17.69■□□□□ 0.42
SMPD3-211ENST00000568373 KCNE1BA0A087WTH5 132 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 KRT87PA6NCN2 255 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 AQP12BA6NM10 295 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 INPP4BO15327 924 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 SEC22BO75396 215 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 GSK3BP49841 420 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 ELP6Q0PNE2 266 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 ZNF234Q14588 700 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 PTGR1Q14914 329 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 PDGFRLQ15198 375 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 NANOGP8Q6NSW7 305 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 FBXL19Q6PCT2 694 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 PRR23BQ6ZRT6 265 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 SFTPA1Q8IWL2 248 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 AQP12AQ8IXF9 295 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 L3MBTL4Q8NA19 623 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 GLMNQ92990 594 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 TMEM159Q96B96 161 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 FBXL8Q96CD0 374 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 CCM2Q9BSQ5 444 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 EFHD1Q9BUP0 239 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 ACPTQ9BZG2 426 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 NANOGQ9H9S0 305 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 HPS4Q9NQG7 708 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 DNAJC11Q9NVH1 559 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 C1orf109Q9NX04 203 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 EGFL7Q9UHF1 273 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 SNX6Q9UNH7 406 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 SLC22A14Q9Y267 594 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 ZNF839A8K0R7 811 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 AREL1O15033 823 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 PSIP1O75475 530 aaKnown RBP17.68■□□□□ 0.42
SMPD3-211ENST00000568373 PDYNP01213 254 aa17.68■□□□□ 0.42
SMPD3-211ENST00000568373 EEFSECP57772 596 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms