RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	ROD1	Q02805	837 aa		4.02	□□□□□ -1.77
LCB4	YOR171C	ELG1	Q12050	791 aa		4.02	□□□□□ -1.77
LCB4	YOR171C	SAC7	P17121	654 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	PRI2	P20457	528 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	NMD2	P38798	1089 aa	Known RBP	4.01	□□□□□ -1.77
LCB4	YOR171C	AIM21	P40563	679 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	NNF1	P47149	201 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	FPR4	Q06205	392 aa	Predicted RBP	4.01	□□□□□ -1.77
LCB4	YOR171C	AI1	P03875	834 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	CAB3	P36076	571 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	YKL069W	P36088	180 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	ARL1	P38116	183 aa	Known RBP	4.01	□□□□□ -1.77
LCB4	YOR171C	TY4A-J	P47023	414 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	MTR4	P47047	1073 aa	Known RBP	4.01	□□□□□ -1.77
LCB4	YOR171C	ENT3	P47160	408 aa		4.01	□□□□□ -1.77
LCB4	YOR171C	BRE1	Q07457	700 aa	Known RBP	4.01	□□□□□ -1.77
LCB4	YOR171C	REI1	P38344	393 aa	Predicted RBP	4	□□□□□ -1.77
LCB4	YOR171C	RRM3	P38766	723 aa		4	□□□□□ -1.77
LCB4	YOR171C	TAT2	P38967	592 aa		4	□□□□□ -1.77
LCB4	YOR171C	BOI2	P39969	1040 aa		4	□□□□□ -1.77
LCB4	YOR171C	RPT2	P40327	437 aa	Known RBP	4	□□□□□ -1.77
LCB4	YOR171C	YFL066C	P43538	392 aa		4	□□□□□ -1.77
LCB4	YOR171C	EST2	Q06163	884 aa		4	□□□□□ -1.77
LCB4	YOR171C	TMA46	Q12000	345 aa	Known RBP	4	□□□□□ -1.77
LCB4	YOR171C	DED1	P06634	604 aa	Known RBP	3.99	□□□□□ -1.77
LCB4	YOR171C	MKK2	P32491	506 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	RER2	P35196	286 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	SPO74	P45819	413 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	YNR014W	P53719	212 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
LCB4	YOR171C	ESC2	Q06340	456 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	ALG6	Q12001	544 aa	Known RBP	3.99	□□□□□ -1.77
LCB4	YOR171C	PHM7	Q12252	991 aa		3.99	□□□□□ -1.77
LCB4	YOR171C	TRP2	P00899	507 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	GAL11	P19659	1081 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	RAD27	P26793	382 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	AFG2	P32794	780 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	MAE1	P36013	669 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	ADD66	P36040	267 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	IOC3	P43596	787 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	DSE4	P53753	1117 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	YMR074C	Q04773	145 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	GAS5	Q08193	484 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	OPI10	Q08202	246 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	WRS1	Q12109	432 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	TY1A-NL1	Q12391	440 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	LYP1	P32487	611 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	RPS0A	P32905	252 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	PMC1	P38929	1173 aa	Predicted RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	RAT1	Q02792	1006 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	RKM2	Q03942	479 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	TDA6	Q06466	467 aa		3.98	□□□□□ -1.77
LCB4	YOR171C	FAL1	Q12099	399 aa	Known RBP	3.98	□□□□□ -1.77
LCB4	YOR171C	BAS1	P22035	811 aa		3.97	□□□□□ -1.77
LCB4	YOR171C	GRX1	P25373	110 aa	Known RBP	3.97	□□□□□ -1.77
LCB4	YOR171C	MPP10	P47083	593 aa	Known RBP	3.97	□□□□□ -1.77
LCB4	YOR171C	BUD9	P53226	547 aa		3.97	□□□□□ -1.77
LCB4	YOR171C	THI72	Q08579	599 aa		3.97	□□□□□ -1.77
LCB4	YOR171C	SEA4	P38164	1038 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	MCX1	P38323	520 aa	Predicted RBP	3.96	□□□□□ -1.77
LCB4	YOR171C	YAR028W	P39548	234 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	SPF1	P39986	1215 aa	Known RBP	3.96	□□□□□ -1.77
LCB4	YOR171C	TYW3	P53177	273 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	YGR045C	P53229	120 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	NCE103	P53615	221 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	YNR063W	P53749	607 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	YOR223W	Q12015	292 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	YLL054C	Q12244	843 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	YOL098C	Q12496	1037 aa		3.96	□□□□□ -1.77
LCB4	YOR171C	RPA135	P22138	1203 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	SYP1	P25623	870 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	MDJ1	P35191	511 aa		3.96	□□□□□ -1.78
LCB4	YOR171C	RNH70	P53331	553 aa		3.96	□□□□□ -1.78
LCB4	YOR171C	ELA1	P53861	379 aa	Predicted RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	NSG2	P53898	299 aa		3.96	□□□□□ -1.78
LCB4	YOR171C	TIF35	Q04067	274 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	DOT1	Q04089	582 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	YLR225C	Q05948	407 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	TDA5	Q06417	326 aa	Known RBP	3.96	□□□□□ -1.78
LCB4	YOR171C	DBP5	P20449	482 aa	Known RBP	3.95	□□□□□ -1.78
LCB4	YOR171C	TSR4	P25040	408 aa		3.95	□□□□□ -1.78
LCB4	YOR171C	ABD1	P32783	436 aa	Predicted RBP	3.95	□□□□□ -1.78
LCB4	YOR171C	MOT2	P34909	587 aa	Known RBP	3.95	□□□□□ -1.78
LCB4	YOR171C	ALG3	P38179	458 aa		3.95	□□□□□ -1.78
LCB4	YOR171C	YJL049W	P47048	450 aa		3.95	□□□□□ -1.78
LCB4	YOR171C	GIR2	Q03768	265 aa	Predicted RBP	3.95	□□□□□ -1.78
LCB4	YOR171C	AOS1	Q06624	347 aa		3.95	□□□□□ -1.78
LCB4	YOR171C	AVO1	Q08236	1176 aa		3.95	□□□□□ -1.78
LCB4	YOR171C	AI3	P03877	415 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	SFA1	P32771	386 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	STE5	P32917	917 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	MPE1	P35728	441 aa	Known RBP	3.94	□□□□□ -1.78
LCB4	YOR171C	TPM2	P40414	161 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	CNN1	P43618	361 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	YPL066W	Q12194	479 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	YDR215C	Q12240	137 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	INO1	P11986	533 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	AGP1	P25376	633 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	ATG14	P38270	344 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	MPH1	P40562	993 aa		3.94	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 37.4 ms