RNA–Protein interactions for RNA: YLR396C

VPS33, Transcript of ATP-binding protein that is a subunit of the HOPS and CORVET complexes, yeast

Gene VPS33, Length 2,076 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS33	YLR396C	PRY1	P47032	299 aa		4.75	□□□□□ -1.65
VPS33	YLR396C	DOT1	Q04089	582 aa	Known RBP	4.75	□□□□□ -1.65
VPS33	YLR396C	PHM7	Q12252	991 aa		4.75	□□□□□ -1.65
VPS33	YLR396C	TRP2	P00899	507 aa	Known RBP	4.74	□□□□□ -1.65
VPS33	YLR396C	SLN1	P39928	1220 aa	Predicted RBP	4.74	□□□□□ -1.65
VPS33	YLR396C	RAT1	Q02792	1006 aa	Known RBP	4.74	□□□□□ -1.65
VPS33	YLR396C	YMR187C	Q03236	431 aa		4.74	□□□□□ -1.65
VPS33	YLR396C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
VPS33	YLR396C	AVO1	Q08236	1176 aa		4.74	□□□□□ -1.65
VPS33	YLR396C	OCA5	P38738	679 aa		4.74	□□□□□ -1.65
VPS33	YLR396C	ARI1	P53111	347 aa	Known RBP	4.74	□□□□□ -1.65
VPS33	YLR396C	YNR063W	P53749	607 aa		4.74	□□□□□ -1.65
VPS33	YLR396C	ELA1	P53861	379 aa	Predicted RBP	4.74	□□□□□ -1.65
VPS33	YLR396C	YPR053C	Q6Q5F3	151 aa		4.74	□□□□□ -1.65
VPS33	YLR396C	RSC6	P25632	483 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	ATG14	P38270	344 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	SKN7	P38889	622 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	ICP55	P40051	511 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	TYW3	P53177	273 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	SYP1	P25623	870 aa	Known RBP	4.73	□□□□□ -1.65
VPS33	YLR396C	LYP1	P32487	611 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	GPT2	P36148	743 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	NNF1	P47149	201 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	OPI10	Q08202	246 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	LAP2	Q10740	671 aa		4.73	□□□□□ -1.65
VPS33	YLR396C	PRI2	P20457	528 aa		4.72	□□□□□ -1.65
VPS33	YLR396C	YKL069W	P36088	180 aa		4.72	□□□□□ -1.65
VPS33	YLR396C	MSH4	P40965	878 aa	Predicted RBP	4.72	□□□□□ -1.65
VPS33	YLR396C	ORC1	P54784	914 aa	Predicted RBP	4.72	□□□□□ -1.65
VPS33	YLR396C	TIF35	Q04067	274 aa	Known RBP	4.72	□□□□□ -1.65
VPS33	YLR396C	WRS1	Q12109	432 aa	Known RBP	4.72	□□□□□ -1.65
VPS33	YLR396C	DBP5	P20449	482 aa	Known RBP	4.71	□□□□□ -1.65
VPS33	YLR396C	ALG3	P38179	458 aa		4.71	□□□□□ -1.65
VPS33	YLR396C	CNN1	P43618	361 aa		4.71	□□□□□ -1.65
VPS33	YLR396C	FAL1	Q12099	399 aa	Known RBP	4.71	□□□□□ -1.65
VPS33	YLR396C	SMY2	P32909	740 aa	Known RBP	4.71	□□□□□ -1.66
VPS33	YLR396C	NNK1	P36003	928 aa		4.71	□□□□□ -1.66
VPS33	YLR396C	HSE1	P38753	452 aa		4.71	□□□□□ -1.66
VPS33	YLR396C	RSA3	Q05942	220 aa	Known RBP	4.71	□□□□□ -1.66
VPS33	YLR396C	PTC5	Q12511	572 aa		4.71	□□□□□ -1.66
VPS33	YLR396C	BAS1	P22035	811 aa		4.7	□□□□□ -1.66
VPS33	YLR396C	TAT1	P38085	619 aa		4.7	□□□□□ -1.66
VPS33	YLR396C	SEA4	P38164	1038 aa		4.7	□□□□□ -1.66
VPS33	YLR396C	QNS1	P38795	714 aa	Known RBP	4.7	□□□□□ -1.66
VPS33	YLR396C	TAT2	P38967	592 aa		4.7	□□□□□ -1.66
VPS33	YLR396C	VPS53	P47061	822 aa		4.7	□□□□□ -1.66
VPS33	YLR396C	RET1	P22276	1149 aa	Known RBP	4.69	□□□□□ -1.66
VPS33	YLR396C	SPF1	P39986	1215 aa	Known RBP	4.69	□□□□□ -1.66
VPS33	YLR396C	MPH1	P40562	993 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	ALT1	P52893	592 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	SPO20	Q04359	397 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	ESC2	Q06340	456 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	AOS1	Q06624	347 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	GRX1	P25373	110 aa	Known RBP	4.69	□□□□□ -1.66
VPS33	YLR396C	AGP1	P25376	633 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	PGM1	P33401	570 aa	Known RBP	4.69	□□□□□ -1.66
VPS33	YLR396C	RGD1	P38339	666 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	YLR257W	Q06146	321 aa	Known RBP	4.69	□□□□□ -1.66
VPS33	YLR396C	GIC2	Q06648	383 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	MCA1	Q08601	432 aa		4.69	□□□□□ -1.66
VPS33	YLR396C	INO1	P11986	533 aa		4.68	□□□□□ -1.66
VPS33	YLR396C	NFS1	P25374	497 aa		4.68	□□□□□ -1.66
VPS33	YLR396C	ABD1	P32783	436 aa	Predicted RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	YJL049W	P47048	450 aa		4.68	□□□□□ -1.66
VPS33	YLR396C	YLR225C	Q05948	407 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	YPL066W	Q12194	479 aa		4.68	□□□□□ -1.66
VPS33	YLR396C	PUS1	Q12211	544 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	RPS4A	P0CX35	261 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	RPS4B	P0CX36	261 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	NAM7	P30771	971 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	MOT2	P34909	587 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	TDA5	Q06417	326 aa	Known RBP	4.68	□□□□□ -1.66
VPS33	YLR396C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.67	□□□□□ -1.66	not detected
VPS33	YLR396C	SBA1	P28707	216 aa	Known RBP	4.67	□□□□□ -1.66
VPS33	YLR396C	MLS1	P30952	554 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	AKR1	P39010	764 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	HNT2	P49775	206 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	EAR1	Q03212	550 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	YOL098C	Q12496	1037 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	RKM4	Q12504	494 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	YTA7	P40340	1379 aa		4.67	□□□□□ -1.66
VPS33	YLR396C	KIP1	P28742	1111 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	MCM7	P38132	845 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	KRI1	P42846	591 aa	Known RBP	4.66	□□□□□ -1.66
VPS33	YLR396C	SHE9	Q04172	456 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
VPS33	YLR396C	PUS7	Q08647	676 aa	Known RBP	4.66	□□□□□ -1.66
VPS33	YLR396C	YPL260W	Q08977	551 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	SAF1	P38352	637 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	NMD3	P38861	518 aa	Known RBP	4.66	□□□□□ -1.66
VPS33	YLR396C	IOC3	P43596	787 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	YJL045W	P47052	634 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	YPL034W	Q03083	165 aa		4.66	□□□□□ -1.66
VPS33	YLR396C	HRK1	Q08732	759 aa	Known RBP	4.66	□□□□□ -1.66
VPS33	YLR396C	YKL107W	P34251	309 aa		4.65	□□□□□ -1.66
VPS33	YLR396C	VBA5	P36172	582 aa		4.65	□□□□□ -1.66
VPS33	YLR396C	GNT1	Q12096	491 aa		4.65	□□□□□ -1.66
VPS33	YLR396C	STE5	P32917	917 aa		4.65	□□□□□ -1.67
VPS33	YLR396C	MMM1	P41800	426 aa		4.65	□□□□□ -1.67
VPS33	YLR396C	YGL176C	P46945	554 aa		4.65	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms