RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W MET7Q08645 548 aa5.17□□□□□ -1.58
SSH4YKL124W RIM20Q12033 661 aa5.17□□□□□ -1.58
SSH4YKL124W CLF1Q12309 687 aaPredicted RBP5.17□□□□□ -1.58
SSH4YKL124W CHO2P05374 869 aaKnown RBP5.17□□□□□ -1.58
SSH4YKL124W TPM1P17536 199 aaKnown RBP5.17□□□□□ -1.58
SSH4YKL124W RGT1P32862 1170 aa5.17□□□□□ -1.58
SSH4YKL124W AAP1P37898 856 aaKnown RBP5.17□□□□□ -1.58
SSH4YKL124W SAP30P38429 201 aa5.17□□□□□ -1.58
SSH4YKL124W OCA5P38738 679 aa5.17□□□□□ -1.58
SSH4YKL124W CRG1P38892 291 aaRIP-Chip data5.17□□□□□ -1.58not detected
SSH4YKL124W YGR125WP53273 1036 aa5.17□□□□□ -1.58
SSH4YKL124W VPS62P53285 467 aa5.17□□□□□ -1.58
SSH4YKL124W CDC19P00549 500 aaKnown RBP5.16□□□□□ -1.58
SSH4YKL124W PRE10P21242 288 aaKnown RBP RIP-Chip data5.16□□□□□ -1.58not detected
SSH4YKL124W GUT1P32190 709 aa5.16□□□□□ -1.58
SSH4YKL124W PRO3P32263 286 aaKnown RBP5.16□□□□□ -1.58
SSH4YKL124W SPN1Q06505 410 aaPredicted RBP5.16□□□□□ -1.58
SSH4YKL124W VAS1P07806 1104 aaKnown RBP5.15□□□□□ -1.58
SSH4YKL124W RAD18P10862 487 aa5.15□□□□□ -1.58
SSH4YKL124W SAM2P19358 384 aaKnown RBP5.15□□□□□ -1.58
SSH4YKL124W RIT1P23796 513 aa5.15□□□□□ -1.58
SSH4YKL124W SEC20P28791 383 aa5.15□□□□□ -1.58
SSH4YKL124W ANP1P32629 500 aa5.15□□□□□ -1.58
SSH4YKL124W LDH1P38139 375 aa5.15□□□□□ -1.58
SSH4YKL124W PHO88P38264 188 aaPredicted RBP5.15□□□□□ -1.58
SSH4YKL124W FOL1P53848 824 aa5.15□□□□□ -1.58
SSH4YKL124W ECM30Q06673 1274 aa5.15□□□□□ -1.58
SSH4YKL124W TGL1P34163 548 aa5.14□□□□□ -1.59
SSH4YKL124W TOM71P38825 639 aaKnown RBP5.14□□□□□ -1.59
SSH4YKL124W FPR4Q06205 392 aaPredicted RBP5.14□□□□□ -1.59
SSH4YKL124W YDL129WQ07555 291 aa5.14□□□□□ -1.59
SSH4YKL124W NUC1P08466 329 aa5.14□□□□□ -1.59
SSH4YKL124W UTR4P32626 227 aa5.14□□□□□ -1.59
SSH4YKL124W VPS45P38932 577 aa5.14□□□□□ -1.59
SSH4YKL124W NAB3P38996 802 aaKnown RBP RIP-Chip data5.14□□□□□ -1.59not detected
SSH4YKL124W RPT6Q01939 405 aaKnown RBP5.14□□□□□ -1.59
SSH4YKL124W FMP30Q02883 468 aa5.14□□□□□ -1.59
SSH4YKL124W VPS30Q02948 557 aa5.14□□□□□ -1.59
SSH4YKL124W MYO5Q04439 1219 aaKnown RBP5.14□□□□□ -1.59
SSH4YKL124W DUS4Q06063 367 aa5.14□□□□□ -1.59
SSH4YKL124W SPH1Q06160 661 aa5.14□□□□□ -1.59
SSH4YKL124W CSC1Q06538 782 aa5.14□□□□□ -1.59
SSH4YKL124W GUD1Q07729 489 aa5.14□□□□□ -1.59
SSH4YKL124W MAK31P23059 88 aa5.13□□□□□ -1.59
SSH4YKL124W RPL8BP29453 256 aaKnown RBP5.13□□□□□ -1.59
SSH4YKL124W TIM23P32897 222 aa5.13□□□□□ -1.59
SSH4YKL124W WHI3P34761 661 aaKnown RBP5.13□□□□□ -1.59
SSH4YKL124W RER2P35196 286 aa5.13□□□□□ -1.59
SSH4YKL124W MAL31P38156 614 aa5.13□□□□□ -1.59
SSH4YKL124W YFL040WP43562 540 aa5.13□□□□□ -1.59
SSH4YKL124W ALG2P43636 503 aa5.13□□□□□ -1.59
SSH4YKL124W SUT2Q12286 268 aa5.13□□□□□ -1.59
SSH4YKL124W MDM20Q12387 796 aaKnown RBP5.13□□□□□ -1.59
SSH4YKL124W YOR131CQ12486 218 aa5.13□□□□□ -1.59
SSH4YKL124W TAO3P40468 2376 aa5.12□□□□□ -1.59
SSH4YKL124W PEP3P27801 918 aa5.12□□□□□ -1.59
SSH4YKL124W RRN6P32786 894 aa5.12□□□□□ -1.59
SSH4YKL124W YJR107WP47145 328 aa5.12□□□□□ -1.59
SSH4YKL124W ECM29P38737 1868 aa5.12□□□□□ -1.59
SSH4YKL124W ACE2P21192 770 aa5.11□□□□□ -1.59
SSH4YKL124W SRP40P32583 406 aaPredicted RBP5.11□□□□□ -1.59
SSH4YKL124W MCR1P36060 302 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W KSP1P38691 1029 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W CLA4P48562 842 aa5.11□□□□□ -1.59
SSH4YKL124W LSB1P53281 241 aa5.11□□□□□ -1.59
SSH4YKL124W GCR2Q01722 534 aa5.11□□□□□ -1.59
SSH4YKL124W PML39Q03760 334 aa5.11□□□□□ -1.59
SSH4YKL124W TMA64Q04600 565 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W TFC6Q06339 672 aa5.11□□□□□ -1.59
SSH4YKL124W TY1B-AO13527 1196 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W SAM1P10659 382 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W SRP54P20424 541 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W BCS1P32839 456 aa5.11□□□□□ -1.59
SSH4YKL124W SEC8P32855 1065 aa5.11□□□□□ -1.59
SSH4YKL124W DEF1P35732 738 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W UIP5P36137 443 aa5.11□□□□□ -1.59
SSH4YKL124W AFG3P39925 761 aa5.11□□□□□ -1.59
SSH4YKL124W FIR1P40020 876 aa5.11□□□□□ -1.59
SSH4YKL124W SPO22P40511 975 aa5.11□□□□□ -1.59
SSH4YKL124W VPS53P47061 822 aa5.11□□□□□ -1.59
SSH4YKL124W BRE5P53741 515 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W HDA1P53973 706 aa5.11□□□□□ -1.59
SSH4YKL124W YPL034WQ03083 165 aa5.11□□□□□ -1.59
SSH4YKL124W EAR1Q03212 550 aa5.11□□□□□ -1.59
SSH4YKL124W UTP4Q06679 776 aaKnown RBP5.11□□□□□ -1.59
SSH4YKL124W NHA1Q99271 985 aa5.11□□□□□ -1.59
SSH4YKL124W VPS13Q07878 3144 aa5.1□□□□□ -1.59
SSH4YKL124W MCM4P30665 933 aaKnown RBP5.1□□□□□ -1.59
SSH4YKL124W CIC1P38779 376 aaKnown RBP5.1□□□□□ -1.59
SSH4YKL124W CSM2P40465 213 aa5.1□□□□□ -1.59
SSH4YKL124W MDM1Q01846 1127 aa5.1□□□□□ -1.59
SSH4YKL124W BUL2Q03758 920 aaKnown RBP5.1□□□□□ -1.59
SSH4YKL124W DUS3Q06053 668 aaKnown RBP5.1□□□□□ -1.59
SSH4YKL124W EST2Q06163 884 aa5.1□□□□□ -1.59
SSH4YKL124W ISA1Q07821 250 aaPredicted RBP5.1□□□□□ -1.59
SSH4YKL124W MYO1P08964 1928 aa5.1□□□□□ -1.59
SSH4YKL124W RNR3P21672 869 aaKnown RBP5.09□□□□□ -1.59
SSH4YKL124W TKL1P23254 680 aaKnown RBP5.09□□□□□ -1.59
SSH4YKL124W IMP2'P32351 346 aa5.09□□□□□ -1.59
SSH4YKL124W RPS0AP32905 252 aaKnown RBP5.09□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms