RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	NUT2	Q06213	157 aa		4.85	□□□□□ -1.63
UBP6	YFR010W	QCR6	P00127	147 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	TAT1	P38085	619 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	CRP1	P38845	465 aa	Known RBP	4.84	□□□□□ -1.63
UBP6	YFR010W	IES5	P40060	125 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	PSY2	P40164	858 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	NUP82	P40368	713 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	INP51	P40559	946 aa	Known RBP	4.84	□□□□□ -1.63
UBP6	YFR010W	LSB6	P42951	607 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	BUD9	P53226	547 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	GRX3	Q03835	250 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	SLP1	Q12232	587 aa		4.84	□□□□□ -1.63
UBP6	YFR010W	FUS1	P11710	512 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	MET4	P32389	672 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	IRS4	P36115	615 aa	Known RBP	4.83	□□□□□ -1.64
UBP6	YFR010W	TFA2	P36145	328 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	RRM3	P38766	723 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	TED1	P40533	473 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	HOS2	P53096	452 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP6	YFR010W	SOK2	P53438	785 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP6	YFR010W	GAS5	Q08193	484 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	PPM2	Q08282	695 aa		4.83	□□□□□ -1.64
UBP6	YFR010W	RAD4	P14736	754 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	SRM1	P21827	482 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	MTC2	P34246	357 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	MAC1	P35192	417 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	PES4	P39684	611 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	VID27	P40157	782 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	SLX4	Q12098	748 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	RRI2	Q12348	645 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	FOB1	O13329	566 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	AI3	P03877	415 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	MPH2	P0CD99	609 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	HSC82	P15108	705 aa	Known RBP	4.82	□□□□□ -1.64
UBP6	YFR010W	GIP2	P40036	548 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	BIO5	P53744	561 aa	Known RBP	4.82	□□□□□ -1.64
UBP6	YFR010W	UFD2	P54860	961 aa		4.82	□□□□□ -1.64
UBP6	YFR010W	HSE1	P38753	452 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	YAP1801	P38856	637 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	TAT2	P38967	592 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	HUL5	P53119	910 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	CTF4	Q01454	927 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	SXM1	Q04175	944 aa	Known RBP	4.81	□□□□□ -1.64
UBP6	YFR010W	SOG2	Q08817	791 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	FRT1	Q99332	602 aa		4.81	□□□□□ -1.64
UBP6	YFR010W	ATP4	P05626	244 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	PIF1	P07271	859 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	PHO8	P11491	566 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	MCM2	P29469	868 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	TIM23	P32897	222 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	TAF1	P46677	1066 aa		4.8	□□□□□ -1.64
UBP6	YFR010W	PYC2	P32327	1180 aa	Known RBP	4.79	□□□□□ -1.64
UBP6	YFR010W	JNM1	P36224	373 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	DAS1	P47005	663 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	GPI8	P49018	411 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	PRP3	Q03338	469 aa	Predicted RBP	4.79	□□□□□ -1.64
UBP6	YFR010W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
UBP6	YFR010W	TRS120	Q04183	1289 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	SPR28	Q04921	423 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	YDR341C	Q05506	607 aa	Known RBP	4.79	□□□□□ -1.64
UBP6	YFR010W	GRC3	Q07845	632 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	PLP2	Q12017	286 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	HSP42	Q12329	375 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	RTP1	Q12751	981 aa		4.79	□□□□□ -1.64
UBP6	YFR010W	TMA7	Q3E764	64 aa	Known RBP	4.79	□□□□□ -1.64
UBP6	YFR010W	CYB2	P00175	591 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	SAC7	P17121	654 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	BRF1	P29056	596 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	GCD6	P32501	712 aa	Known RBP	4.78	□□□□□ -1.64
UBP6	YFR010W	SFA1	P32771	386 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	PAN5	P38787	379 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	MEP1	P40260	492 aa		4.78	□□□□□ -1.64
UBP6	YFR010W	MTR4	P47047	1073 aa	Known RBP	4.78	□□□□□ -1.64
UBP6	YFR010W	YNR029C	P53729	429 aa	Known RBP	4.78	□□□□□ -1.64
UBP6	YFR010W	SRP1	Q02821	542 aa	Known RBP	4.78	□□□□□ -1.64
UBP6	YFR010W	NOP14	Q99207	810 aa	Known RBP	4.78	□□□□□ -1.64
UBP6	YFR010W	COB	P00163	385 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	INH1	P01097	85 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	HSP82	P02829	709 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	HVG1	P0CE11	249 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	PPH3	P32345	308 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	PEP7	P32609	515 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	YJR124C	P47159	448 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	GUP1	P53154	560 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	CTR9	P89105	1077 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	RSC4	Q02206	625 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	YPL034W	Q03083	165 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	PHM6	Q05637	104 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	YLR257W	Q06146	321 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	YLR125W	Q12138	136 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	NYV1	Q12255	253 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	TY1A-NL1	Q12391	440 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	GRX1	P25373	110 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	HIR1	P32479	840 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	MNR2	P35724	969 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	YKL222C	P35995	705 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	DJP1	P40564	432 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	SEC27	P41811	889 aa	Known RBP	4.77	□□□□□ -1.65
UBP6	YFR010W	BFA1	P47113	574 aa		4.77	□□□□□ -1.65
UBP6	YFR010W	SRB7	P47822	140 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms