RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 RIMS1Q86UR5 1692 aaKnown RBP21.52■■□□□ 1.04
NEK3-206ENST00000611833 SBNO1A3KN83 1393 aa21.51■■□□□ 1.03
NEK3-206ENST00000611833 FLT4P35916 1363 aa21.51■■□□□ 1.03
NEK3-206ENST00000611833 THEMISQ8N1K5 641 aaPredicted RBP21.51■■□□□ 1.03
NEK3-206ENST00000611833 CHMP5Q9NZZ3 219 aa21.51■■□□□ 1.03
NEK3-206ENST00000611833 PIK3C2AO00443 1686 aa21.51■■□□□ 1.03
NEK3-206ENST00000611833 INTS3Q68E01 1043 aaKnown RBP21.51■■□□□ 1.03
NEK3-206ENST00000611833 XRN1Q8IZH2 1706 aaKnown RBP21.5■■□□□ 1.03
NEK3-206ENST00000611833 FOXO3O43524 673 aa21.5■■□□□ 1.03
NEK3-206ENST00000611833 MTHFSDQ2M296 383 aaKnown RBP21.5■■□□□ 1.03
NEK3-206ENST00000611833 RTN4Q9NQC3 1192 aaKnown RBP21.49■■□□□ 1.03
NEK3-206ENST00000611833 KDRP35968 1356 aa21.49■■□□□ 1.03
NEK3-206ENST00000611833 CEP170BQ9Y4F5 1589 aaPredicted RBP21.47■■□□□ 1.03
NEK3-206ENST00000611833 MIS18AQ9NYP9 233 aa21.47■■□□□ 1.03
NEK3-206ENST00000611833 AMPHP49418 695 aa21.46■■□□□ 1.03
NEK3-206ENST00000611833 TBC1D9Q6ZT07 1266 aa21.46■■□□□ 1.03
NEK3-206ENST00000611833 EYA1Q99502 592 aa21.46■■□□□ 1.03
NEK3-206ENST00000611833 IGSF1Q8N6C5 1336 aa21.46■■□□□ 1.03
NEK3-206ENST00000611833 SNX21Q969T3 373 aa21.46■■□□□ 1.03
NEK3-206ENST00000611833 KCNA6P17658 529 aa21.45■■□□□ 1.02
NEK3-206ENST00000611833 MCM4P33991 863 aa21.45■■□□□ 1.02
NEK3-206ENST00000611833 DCTPP1Q9H773 170 aa21.45■■□□□ 1.02
NEK3-206ENST00000611833 ATP10DQ9P241 1426 aa21.45■■□□□ 1.02
NEK3-206ENST00000611833 PTPRCP08575 1304 aa21.45■■□□□ 1.02
NEK3-206ENST00000611833 NLRP6P59044 892 aa21.44■■□□□ 1.02
NEK3-206ENST00000611833 MSH6P52701 1360 aa21.44■■□□□ 1.02
NEK3-206ENST00000611833 ANKARQ7Z5J8 1434 aa21.44■■□□□ 1.02
NEK3-206ENST00000611833 RTF1Q92541 710 aaKnown RBP21.44■■□□□ 1.02
NEK3-206ENST00000611833 MARF1Q9Y4F3 1742 aaKnown RBP21.43■■□□□ 1.02
NEK3-206ENST00000611833 CDC45O75419 566 aa21.43■■□□□ 1.02
NEK3-206ENST00000611833 SLC4A2P04920 1241 aa21.43■■□□□ 1.02
NEK3-206ENST00000611833 HSP90AB1P08238 724 aaKnown RBP21.43■■□□□ 1.02
NEK3-206ENST00000611833 ANKRD44Q8N8A2 993 aa21.43■■□□□ 1.02
NEK3-206ENST00000611833 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
NEK3-206ENST00000611833 RPAP2Q8IXW5 612 aaPredicted RBP21.42■■□□□ 1.02
NEK3-206ENST00000611833 PLEKHM2Q8IWE5 1019 aa21.41■■□□□ 1.02
NEK3-206ENST00000611833 NUTM2GQ5VZR2 741 aa21.41■■□□□ 1.02
NEK3-206ENST00000611833 CEP85Q6P2H3 762 aa21.4■■□□□ 1.02
NEK3-206ENST00000611833 GAS2L2Q8NHY3 880 aa21.4■■□□□ 1.02
NEK3-206ENST00000611833 RTL1A6NKG5 1358 aa21.4■■□□□ 1.02
NEK3-206ENST00000611833 MEIS3Q99687 375 aa21.4■■□□□ 1.02
NEK3-206ENST00000611833 GSPT1P15170 499 aaKnown RBP21.39■■□□□ 1.02
NEK3-206ENST00000611833 KIF2CQ99661 725 aa21.39■■□□□ 1.02
NEK3-206ENST00000611833 HOXC9P31274 260 aa21.39■■□□□ 1.01
NEK3-206ENST00000611833 NCOA3Q9Y6Q9 1424 aa21.38■■□□□ 1.01
NEK3-206ENST00000611833 EIF5BO60841 1220 aaKnown RBP21.38■■□□□ 1.01
NEK3-206ENST00000611833 G2E3Q7L622 706 aa21.38■■□□□ 1.01
NEK3-206ENST00000611833 C16orf71Q8IYS4 520 aaPredicted RBP21.38■■□□□ 1.01
NEK3-206ENST00000611833 NWD1Q149M9 1564 aa21.38■■□□□ 1.01
NEK3-206ENST00000611833 HSP90AA1P07900 732 aaKnown RBP21.37■■□□□ 1.01
NEK3-206ENST00000611833 L1TD1Q5T7N2 865 aaKnown RBP21.37■■□□□ 1.01
NEK3-206ENST00000611833 TTC22Q5TAA0 569 aa21.37■■□□□ 1.01
NEK3-206ENST00000611833 USP54Q70EL1 1684 aa21.37■■□□□ 1.01
NEK3-206ENST00000611833 LRRC37A3O60309 1634 aa21.37■■□□□ 1.01
NEK3-206ENST00000611833 ABTB2Q8N961 1025 aa21.36■■□□□ 1.01
NEK3-206ENST00000611833 DDIT3P35638 169 aa21.35■■□□□ 1.01
NEK3-206ENST00000611833 F6X3S4 739 aa21.35■■□□□ 1.01
NEK3-206ENST00000611833 APBB1O00213 710 aa21.35■■□□□ 1.01
NEK3-206ENST00000611833 SLC4A10Q6U841 1118 aa21.35■■□□□ 1.01
NEK3-206ENST00000611833 HTATSF1O43719 755 aaKnown RBP21.34■■□□□ 1.01
NEK3-206ENST00000611833 TRAK2O60296 914 aa21.34■■□□□ 1.01
NEK3-206ENST00000611833 DDX11L8A8MPP1 907 aa21.34■■□□□ 1.01
NEK3-206ENST00000611833 GZF1Q9H116 711 aaPredicted RBP21.34■■□□□ 1.01
NEK3-206ENST00000611833 CIZ1Q9ULV3 898 aaPredicted RBP21.34■■□□□ 1.01
NEK3-206ENST00000611833 GNAT3A8MTJ3 354 aa21.33■■□□□ 1.01
NEK3-206ENST00000611833 OTUD7AQ8TE49 926 aaPredicted RBP21.33■■□□□ 1.01
NEK3-206ENST00000611833 K7ELQ4 463 aaPredicted RBP21.33■■□□□ 1
NEK3-206ENST00000611833 RBM42Q9BTD8 480 aaKnown RBP21.33■■□□□ 1
NEK3-206ENST00000611833 SMARCA5O60264 1052 aaPredicted RBP21.32■■□□□ 1
NEK3-206ENST00000611833 CD2BP2O95400 341 aaKnown RBP21.32■■□□□ 1
NEK3-206ENST00000611833 HMMRO75330 724 aa21.32■■□□□ 1
NEK3-206ENST00000611833 CCT4P50991 539 aaKnown RBP21.32■■□□□ 1
NEK3-206ENST00000611833 LTV1Q96GA3 475 aaPredicted RBP21.32■■□□□ 1
NEK3-206ENST00000611833 STK31Q9BXU1 1019 aa21.31■■□□□ 1
NEK3-206ENST00000611833 FOXD4L1Q9NU39 408 aa21.31■■□□□ 1
NEK3-206ENST00000611833 FAM208AQ9UK61 1670 aaKnown RBP21.3■■□□□ 1
NEK3-206ENST00000611833 GOLGA6L3A6NEY3 463 aa21.3■■□□□ 1
NEK3-206ENST00000611833 CASC1Q6TDU7 716 aa21.3■■□□□ 1
NEK3-206ENST00000611833 IL17REQ8NFR9 667 aa21.3■■□□□ 1
NEK3-206ENST00000611833 MAP3K5Q99683 1374 aa21.3■■□□□ 1
NEK3-206ENST00000611833 TNPO1Q92973 898 aaKnown RBP21.29■■□□□ 1
NEK3-206ENST00000611833 ARXQ96QS3 562 aa21.29■■□□□ 1
NEK3-206ENST00000611833 PHF8Q9UPP1 1060 aa21.29■■□□□ 1
NEK3-206ENST00000611833 CHD2O14647 1828 aaKnown RBP21.29■■□□□ 1
NEK3-206ENST00000611833 C14orf37Q86TY3 774 aa21.29■■□□□ 1
NEK3-206ENST00000611833 RBM33Q96EV2 1170 aaKnown RBP21.28■■□□□ 1
NEK3-206ENST00000611833 GBP4Q96PP9 640 aa21.28■■□□□ 1
NEK3-206ENST00000611833 LTN1O94822 1766 aa21.28■■□□□ 1
NEK3-206ENST00000611833 SDSP20132 328 aa21.28■■□□□ 1
NEK3-206ENST00000611833 RAB3GAP1Q15042 981 aa21.27■■□□□ 1
NEK3-206ENST00000611833 USHBP1Q8N6Y0 703 aa21.27■■□□□ 1
NEK3-206ENST00000611833 FLIIQ13045 1269 aa21.27■□□□□ 0.99
NEK3-206ENST00000611833 RABEP1Q15276 862 aa21.27■□□□□ 0.99
NEK3-206ENST00000611833 CCDC30Q5VVM6 783 aa21.27■□□□□ 0.99
NEK3-206ENST00000611833 NECTIN2Q92692 538 aa21.26■□□□□ 0.99
NEK3-206ENST00000611833 GNAI2P04899 355 aa21.26■□□□□ 0.99
NEK3-206ENST00000611833 USP26Q9BXU7 913 aa21.26■□□□□ 0.99
NEK3-206ENST00000611833 FKBP5Q13451 457 aaPredicted RBP21.25■□□□□ 0.99
NEK3-206ENST00000611833 ANKLE2Q86XL3 938 aa21.25■□□□□ 0.99
NEK3-206ENST00000611833 TAF7Q15545 349 aaPredicted RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms