RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 RLBP1P12271 317 aa13.21□□□□□ -0.29
VPS25-203ENST00000589520 PDE4AP27815 886 aa13.21□□□□□ -0.29
VPS25-203ENST00000589520 NUTM2GQ5VZR2 741 aa13.21□□□□□ -0.29
VPS25-203ENST00000589520 POTEAQ6S8J7 498 aa13.21□□□□□ -0.29
VPS25-203ENST00000589520 THUMPD2Q9BTF0 503 aaKnown RBP13.21□□□□□ -0.29
VPS25-203ENST00000589520 BACH2Q9BYV9 841 aa13.21□□□□□ -0.29
VPS25-203ENST00000589520 TMEM94Q12767 1356 aa13.2□□□□□ -0.3
VPS25-203ENST00000589520 USP19O94966 1318 aa13.2□□□□□ -0.3
VPS25-203ENST00000589520 HDAC1Q13547 482 aaPredicted RBP13.2□□□□□ -0.3
VPS25-203ENST00000589520 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
VPS25-203ENST00000589520 RBM33Q96EV2 1170 aaKnown RBP13.2□□□□□ -0.3
VPS25-203ENST00000589520 CRB1P82279 1406 aa13.2□□□□□ -0.3
VPS25-203ENST00000589520 NPHP3Q7Z494 1330 aa13.19□□□□□ -0.3
VPS25-203ENST00000589520 FAM83GA6ND36 823 aa13.19□□□□□ -0.3
VPS25-203ENST00000589520 AMOTQ4VCS5 1084 aa13.19□□□□□ -0.3
VPS25-203ENST00000589520 ITPRIPQ8IWB1 547 aa13.19□□□□□ -0.3
VPS25-203ENST00000589520 MSH6P52701 1360 aa13.19□□□□□ -0.3
VPS25-203ENST00000589520 SLIT3O75094 1523 aa13.18□□□□□ -0.3
VPS25-203ENST00000589520 NFAT5O94916 1531 aa13.18□□□□□ -0.3
VPS25-203ENST00000589520 PHRF1Q9P1Y6 1649 aaKnown RBP13.18□□□□□ -0.3
VPS25-203ENST00000589520 IGHDP01880 384 aa13.18□□□□□ -0.3
VPS25-203ENST00000589520 ANP32AP39687 249 aaKnown RBP13.18□□□□□ -0.3
VPS25-203ENST00000589520 C8orf58Q8NAV2 365 aa13.18□□□□□ -0.3
VPS25-203ENST00000589520 PLEKHG2Q9H7P9 1386 aa13.18□□□□□ -0.3
VPS25-203ENST00000589520 PTPRCP08575 1304 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 MARF1Q9Y4F3 1742 aaKnown RBP13.17□□□□□ -0.3
VPS25-203ENST00000589520 DCTN1Q14203 1278 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 FAM161AQ3B820 660 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
VPS25-203ENST00000589520 MCM10Q7L590 875 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 TMEM57Q8N5G2 664 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 TSPYL6Q8N831 410 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 ZBTB40Q9NUA8 1239 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 PCDHB15Q9Y5E8 787 aa13.17□□□□□ -0.3
VPS25-203ENST00000589520 TOM1O60784 492 aa13.16□□□□□ -0.3
VPS25-203ENST00000589520 TAF7Q15545 349 aaPredicted RBP13.16□□□□□ -0.3
VPS25-203ENST00000589520 TSPYL4Q9UJ04 414 aa13.16□□□□□ -0.3
VPS25-203ENST00000589520 MAP3K5Q99683 1374 aa13.16□□□□□ -0.3
VPS25-203ENST00000589520 DLG5Q8TDM6 1919 aa13.15□□□□□ -0.3
VPS25-203ENST00000589520 ABCC4O15439 1325 aa13.14□□□□□ -0.31
VPS25-203ENST00000589520 ZBTB7BO15156 539 aaPredicted RBP13.14□□□□□ -0.31
VPS25-203ENST00000589520 LTV1Q96GA3 475 aaPredicted RBP13.14□□□□□ -0.31
VPS25-203ENST00000589520 TNNQ9UQP3 1299 aa13.14□□□□□ -0.31
VPS25-203ENST00000589520 ELL2O00472 640 aaPredicted RBP13.13□□□□□ -0.31
VPS25-203ENST00000589520 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
VPS25-203ENST00000589520 NBPF6Q5VWK0 638 aa13.13□□□□□ -0.31
VPS25-203ENST00000589520 INTS3Q68E01 1043 aaKnown RBP13.13□□□□□ -0.31
VPS25-203ENST00000589520 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
VPS25-203ENST00000589520 NBPF4Q96M43 638 aa13.13□□□□□ -0.31
VPS25-203ENST00000589520 NCAPD2Q15021 1401 aa13.13□□□□□ -0.31
VPS25-203ENST00000589520 HOXB7P09629 217 aa13.12□□□□□ -0.31
VPS25-203ENST00000589520 CCDC30Q5VVM6 783 aa13.12□□□□□ -0.31
VPS25-203ENST00000589520 SMC5Q8IY18 1101 aa13.12□□□□□ -0.31
VPS25-203ENST00000589520 GCC1Q96CN9 775 aa13.12□□□□□ -0.31
VPS25-203ENST00000589520 TRPM3Q9HCF6 1732 aaPredicted RBP13.12□□□□□ -0.31
VPS25-203ENST00000589520 IL17REQ8NFR9 667 aa13.11□□□□□ -0.31
VPS25-203ENST00000589520 ANKRD24Q8TF21 1146 aa13.11□□□□□ -0.31
VPS25-203ENST00000589520 STK31Q9BXU1 1019 aa13.11□□□□□ -0.31
VPS25-203ENST00000589520 ABCC6O95255 1503 aa13.11□□□□□ -0.31
VPS25-203ENST00000589520 OVOS2A0A0G2JMS6 1433 aa13.11□□□□□ -0.31
VPS25-203ENST00000589520 CEMIPQ8WUJ3 1361 aa13.1□□□□□ -0.31
VPS25-203ENST00000589520 RGS3P49796 1198 aa13.1□□□□□ -0.31
VPS25-203ENST00000589520 IPO9Q96P70 1041 aaKnown RBP13.1□□□□□ -0.31
VPS25-203ENST00000589520 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS25-203ENST00000589520 PDZRN3Q9UPQ7 1066 aa13.1□□□□□ -0.31
VPS25-203ENST00000589520 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
VPS25-203ENST00000589520 LTN1O94822 1766 aa13.09□□□□□ -0.31
VPS25-203ENST00000589520 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
VPS25-203ENST00000589520 C1orf141Q5JVX7 400 aa13.09□□□□□ -0.31
VPS25-203ENST00000589520 TNS3Q68CZ2 1445 aa13.09□□□□□ -0.31
VPS25-203ENST00000589520 DDRGK1Q96HY6 314 aa13.09□□□□□ -0.31
VPS25-203ENST00000589520 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
VPS25-203ENST00000589520 CCT4P50991 539 aaKnown RBP13.08□□□□□ -0.32
VPS25-203ENST00000589520 RPAP2Q8IXW5 612 aaPredicted RBP13.08□□□□□ -0.32
VPS25-203ENST00000589520 UPF1Q92900 1129 aaKnown RBP eCLIP13.08□□□□□ -0.323e-8■■■■□ 23
VPS25-203ENST00000589520 CPDO75976 1380 aa13.07□□□□□ -0.32
VPS25-203ENST00000589520 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
VPS25-203ENST00000589520 EIF5BO60841 1220 aaKnown RBP13.07□□□□□ -0.32
VPS25-203ENST00000589520 ALS2Q96Q42 1657 aa13.07□□□□□ -0.32
VPS25-203ENST00000589520 ERBB3P21860 1342 aa13.07□□□□□ -0.32
VPS25-203ENST00000589520 LRRC37A3O60309 1634 aa13.06□□□□□ -0.32
VPS25-203ENST00000589520 TEFQ10587 303 aa13.06□□□□□ -0.32
VPS25-203ENST00000589520 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
VPS25-203ENST00000589520 ZNF530Q6P9A1 599 aaPredicted RBP13.06□□□□□ -0.32
VPS25-203ENST00000589520 ERICH6Q7L0X2 663 aa13.06□□□□□ -0.32
VPS25-203ENST00000589520 SLAIN2Q9P270 581 aa13.06□□□□□ -0.32
VPS25-203ENST00000589520 STRCP1A6NGW2 1772 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 RNMTO43148 476 aaKnown RBP13.05□□□□□ -0.32
VPS25-203ENST00000589520 NUCB1Q02818 461 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 USHBP1Q8N6Y0 703 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 MIS18AQ9NYP9 233 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 ZBTB47Q9UFB7 747 aaPredicted RBP13.05□□□□□ -0.32
VPS25-203ENST00000589520 SPG7Q9UQ90 795 aa13.05□□□□□ -0.32
VPS25-203ENST00000589520 SOS2Q07890 1332 aaPredicted RBP13.05□□□□□ -0.32
VPS25-203ENST00000589520 PXDNQ92626 1479 aa13.04□□□□□ -0.32
VPS25-203ENST00000589520 HSP90AB1P08238 724 aaKnown RBP13.04□□□□□ -0.32
VPS25-203ENST00000589520 TATP17735 454 aaPredicted RBP13.04□□□□□ -0.32
VPS25-203ENST00000589520 BRINP3Q76B58 766 aa13.04□□□□□ -0.32
VPS25-203ENST00000589520 LRRC59Q96AG4 307 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms