RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 HOXC9P31274 260 aa11.74□□□□□ -0.53
VPS39-207ENST00000563692 R3HDM1Q15032 1099 aaKnown RBP11.74□□□□□ -0.53
VPS39-207ENST00000563692 RUNDC1Q96C34 613 aa11.74□□□□□ -0.53
VPS39-207ENST00000563692 TNS2Q63HR2 1409 aa11.74□□□□□ -0.53
VPS39-207ENST00000563692 LRRC37A3O60309 1634 aa11.74□□□□□ -0.53
VPS39-207ENST00000563692 RTL1A6NKG5 1358 aa11.73□□□□□ -0.53
VPS39-207ENST00000563692 BCL9O00512 1426 aa11.73□□□□□ -0.53
VPS39-207ENST00000563692 U2AF1L5P0DN76 240 aaPredicted RBP11.73□□□□□ -0.53
VPS39-207ENST00000563692 U2AF1Q01081 240 aaKnown RBP eCLIP11.73□□□□□ -0.53
VPS39-207ENST00000563692 RRS1Q15050 365 aaKnown RBP11.73□□□□□ -0.53
VPS39-207ENST00000563692 TNS1Q9HBL0 1735 aaKnown RBP11.72□□□□□ -0.53
VPS39-207ENST00000563692 FKBP8Q14318 412 aa11.72□□□□□ -0.53
VPS39-207ENST00000563692 NCBP3Q53F19 620 aaKnown RBP11.72□□□□□ -0.53
VPS39-207ENST00000563692 CCDC146Q8IYE0 955 aa11.72□□□□□ -0.53
VPS39-207ENST00000563692 POLKQ9UBT6 870 aa11.72□□□□□ -0.53
VPS39-207ENST00000563692 LTN1O94822 1766 aa11.72□□□□□ -0.53
VPS39-207ENST00000563692 SENP3-EIF4A1A0A087X0R7 540 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 APAF1O14727 1248 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 U2SURPO15042 1029 aaKnown RBP11.71□□□□□ -0.53
VPS39-207ENST00000563692 PLSCR1O15162 318 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 PPM1GO15355 546 aaPredicted RBP11.71□□□□□ -0.53
VPS39-207ENST00000563692 NEFMP07197 916 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 FBLN1P23142 703 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 GOLGA2Q08379 1002 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 ERICH6BQ5W0A0 696 aa11.71□□□□□ -0.53
VPS39-207ENST00000563692 RGPD5Q99666 1765 aa11.71□□□□□ -0.54
VPS39-207ENST00000563692 ANKRD26Q9UPS8 1709 aa11.71□□□□□ -0.54
VPS39-207ENST00000563692 KIF20BQ96Q89 1820 aa11.7□□□□□ -0.54
VPS39-207ENST00000563692 FLT4P35916 1363 aa11.69□□□□□ -0.54
VPS39-207ENST00000563692 KIF24Q5T7B8 1368 aa11.69□□□□□ -0.54
VPS39-207ENST00000563692 DDX54Q8TDD1 881 aaKnown RBP11.69□□□□□ -0.54
VPS39-207ENST00000563692 RAPGEF4Q8WZA2 1011 aa11.69□□□□□ -0.54
VPS39-207ENST00000563692 SRCAPQ6ZRS2 3230 aa11.69□□□□□ -0.54
VPS39-207ENST00000563692 WNK3Q9BYP7 1800 aa11.68□□□□□ -0.54
VPS39-207ENST00000563692 FCHSD2O94868 740 aa11.68□□□□□ -0.54
VPS39-207ENST00000563692 ACSBG1Q96GR2 724 aa11.68□□□□□ -0.54
VPS39-207ENST00000563692 PEAK1Q9H792 1746 aa11.68□□□□□ -0.54
VPS39-207ENST00000563692 MAPK8IP3Q9UPT6 1336 aa11.67□□□□□ -0.54
VPS39-207ENST00000563692 CCDC27Q2M243 656 aa11.67□□□□□ -0.54
VPS39-207ENST00000563692 HSP90AB2PQ58FF8 381 aa11.67□□□□□ -0.54
VPS39-207ENST00000563692 ZCRB1Q8TBF4 217 aaKnown RBP11.67□□□□□ -0.54
VPS39-207ENST00000563692 FAM208AQ9UK61 1670 aaKnown RBP11.66□□□□□ -0.54
VPS39-207ENST00000563692 E9PSI1 815 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 KCNQ2O43526 872 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 TATP17735 454 aaPredicted RBP11.66□□□□□ -0.54
VPS39-207ENST00000563692 NBPF6Q5VWK0 638 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 PTF1AQ7RTS3 328 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 CDCA7LQ96GN5 454 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 NBPF4Q96M43 638 aa11.66□□□□□ -0.54
VPS39-207ENST00000563692 ZNF521Q96K83 1311 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 SLFN5Q08AF3 891 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 TXNRD1Q16881 649 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 WDR63Q8IWG1 891 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
VPS39-207ENST00000563692 USHBP1Q8N6Y0 703 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 SYTL4Q96C24 671 aaPredicted RBP11.65□□□□□ -0.54
VPS39-207ENST00000563692 STK32BQ9NY57 414 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 RCAN3Q9UKA8 241 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 EMILIN1Q9Y6C2 1016 aa11.65□□□□□ -0.54
VPS39-207ENST00000563692 IL13P35225 146 aa11.64□□□□□ -0.55
VPS39-207ENST00000563692 NEUROD2Q15784 382 aa11.64□□□□□ -0.55
VPS39-207ENST00000563692 WWC1Q8IX03 1113 aa11.64□□□□□ -0.55
VPS39-207ENST00000563692 RREB1Q92766 1687 aa11.63□□□□□ -0.55
VPS39-207ENST00000563692 PLEKHF1Q96S99 279 aa11.63□□□□□ -0.55
VPS39-207ENST00000563692 SPON1Q9HCB6 807 aa11.63□□□□□ -0.55
VPS39-207ENST00000563692 LRP5O75197 1615 aa11.63□□□□□ -0.55
VPS39-207ENST00000563692 COL3A1P02461 1466 aaPredicted RBP11.63□□□□□ -0.55
VPS39-207ENST00000563692 PCDH11XQ9BZA7 1347 aa11.62□□□□□ -0.55
VPS39-207ENST00000563692 PCDH11YQ9BZA8 1340 aa11.62□□□□□ -0.55
VPS39-207ENST00000563692 MEGF6O75095 1541 aa11.62□□□□□ -0.55
VPS39-207ENST00000563692 PRIM1P49642 420 aaKnown RBP11.62□□□□□ -0.55
VPS39-207ENST00000563692 TRMT2AQ8IZ69 625 aaKnown RBP11.62□□□□□ -0.55
VPS39-207ENST00000563692 PPP1R1BQ9UD71 204 aaPredicted RBP11.62□□□□□ -0.55
VPS39-207ENST00000563692 RGPD3A6NKT7 1758 aaPredicted RBP11.62□□□□□ -0.55
VPS39-207ENST00000563692 RGPD4Q7Z3J3 1758 aa11.62□□□□□ -0.55
VPS39-207ENST00000563692 RNF123Q5XPI4 1314 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 NUP188Q5SRE5 1749 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 SBF2Q86WG5 1849 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 TMPOP42166 694 aaKnown RBP11.61□□□□□ -0.55
VPS39-207ENST00000563692 DUSP27Q5VZP5 1158 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 PROM2Q8N271 834 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
VPS39-207ENST00000563692 ANO8Q9HCE9 1232 aaPredicted RBP11.61□□□□□ -0.55
VPS39-207ENST00000563692 RRP7AQ9Y3A4 280 aaKnown RBP11.61□□□□□ -0.55
VPS39-207ENST00000563692 KAT6BQ8WYB5 2073 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 NHSQ6T4R5 1651 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 PRKAR2BP31323 418 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 RIPK4P57078 832 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 SLC15A2Q16348 729 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 SLC27A3Q5K4L6 730 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.6□□□□□ -0.55
VPS39-207ENST00000563692 RSPH6AQ9H0K4 717 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 SPG7Q9UQ90 795 aa11.6□□□□□ -0.55
VPS39-207ENST00000563692 MAP2P11137 1827 aaKnown RBP11.6□□□□□ -0.55
VPS39-207ENST00000563692 HMGB2P26583 209 aaKnown RBP11.59□□□□□ -0.55
VPS39-207ENST00000563692 CALD1Q05682 793 aaKnown RBP11.59□□□□□ -0.55
VPS39-207ENST00000563692 PPP4R2Q9NY27 417 aa11.59□□□□□ -0.55
VPS39-207ENST00000563692 HMOX1P09601 288 aa11.58□□□□□ -0.56
VPS39-207ENST00000563692 RRP1P56182 461 aaKnown RBP11.58□□□□□ -0.56
VPS39-207ENST00000563692 IRX6P78412 446 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms