RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 HOXC9P31274 260 aa16.78■□□□□ 0.28
ACTN1-221ENST00000556571 SLC24A1O60721 1099 aa16.77■□□□□ 0.28
ACTN1-221ENST00000556571 CCNL1Q9UK58 526 aaPredicted RBP16.77■□□□□ 0.28
ACTN1-221ENST00000556571 GRIN3BO60391 1043 aa16.76■□□□□ 0.27
ACTN1-221ENST00000556571 GIGYF1O75420 1035 aaPredicted RBP16.76■□□□□ 0.27
ACTN1-221ENST00000556571 NLGN2Q8NFZ4 835 aa16.76■□□□□ 0.27
ACTN1-221ENST00000556571 NSD2O96028 1365 aa16.75■□□□□ 0.27
ACTN1-221ENST00000556571 CGNL1Q0VF96 1302 aa16.74■□□□□ 0.27
ACTN1-221ENST00000556571 QSER1Q2KHR3 1735 aa16.74■□□□□ 0.27
ACTN1-221ENST00000556571 MSH5O43196 834 aa16.74■□□□□ 0.27
ACTN1-221ENST00000556571 FBLN1P23142 703 aa16.74■□□□□ 0.27
ACTN1-221ENST00000556571 HMGB2P26583 209 aaKnown RBP16.74■□□□□ 0.27
ACTN1-221ENST00000556571 FAM208AQ9UK61 1670 aaKnown RBP16.74■□□□□ 0.27
ACTN1-221ENST00000556571 GOLGB1Q14789 3259 aaKnown RBP16.73■□□□□ 0.27
ACTN1-221ENST00000556571 COL23A1Q86Y22 540 aaPredicted RBP16.73■□□□□ 0.27
ACTN1-221ENST00000556571 TESK2Q96S53 571 aa16.73■□□□□ 0.27
ACTN1-221ENST00000556571 USP47Q96K76 1375 aa16.73■□□□□ 0.27
ACTN1-221ENST00000556571 NBPF6Q5VWK0 638 aa16.72■□□□□ 0.27
ACTN1-221ENST00000556571 NBPF4Q96M43 638 aa16.72■□□□□ 0.27
ACTN1-221ENST00000556571 COL24A1Q17RW2 1714 aa16.72■□□□□ 0.27
ACTN1-221ENST00000556571 TONSLQ96HA7 1378 aa16.72■□□□□ 0.27
ACTN1-221ENST00000556571 ST20-MTHFSA0A0A6YYL1 179 aa16.71■□□□□ 0.27
ACTN1-221ENST00000556571 YBX3P16989 372 aaKnown RBP eCLIP16.71■□□□□ 0.272e-8■■■■■ 29.2
ACTN1-221ENST00000556571 RAPGEF4Q8WZA2 1011 aa16.71■□□□□ 0.27
ACTN1-221ENST00000556571 RTL1A6NKG5 1358 aa16.71■□□□□ 0.27
ACTN1-221ENST00000556571 MEGF6O75095 1541 aa16.7■□□□□ 0.26
ACTN1-221ENST00000556571 FLAD1Q8NFF5 587 aa16.7■□□□□ 0.26
ACTN1-221ENST00000556571 TATP17735 454 aaPredicted RBP16.69■□□□□ 0.26
ACTN1-221ENST00000556571 RRS1Q15050 365 aaKnown RBP16.69■□□□□ 0.26
ACTN1-221ENST00000556571 LY75O60449 1722 aa16.68■□□□□ 0.26
ACTN1-221ENST00000556571 FYB1O15117 783 aa16.68■□□□□ 0.26
ACTN1-221ENST00000556571 USHBP1Q8N6Y0 703 aa16.68■□□□□ 0.26
ACTN1-221ENST00000556571 CD2APQ9Y5K6 639 aa16.68■□□□□ 0.26
ACTN1-221ENST00000556571 SMG6Q86US8 1419 aaKnown RBP16.68■□□□□ 0.26
ACTN1-221ENST00000556571 DOT1LQ8TEK3 1739 aa16.67■□□□□ 0.26
ACTN1-221ENST00000556571 MSL1Q68DK7 614 aa16.67■□□□□ 0.26
ACTN1-221ENST00000556571 GGNBP2Q9H3C7 697 aa16.67■□□□□ 0.26
ACTN1-221ENST00000556571 TUBGCP6Q96RT7 1819 aa16.66■□□□□ 0.26
ACTN1-221ENST00000556571 PCDH11XQ9BZA7 1347 aa16.66■□□□□ 0.26
ACTN1-221ENST00000556571 PCDH11YQ9BZA8 1340 aa16.66■□□□□ 0.26
ACTN1-221ENST00000556571 HSP90AB2PQ58FF8 381 aa16.64■□□□□ 0.25
ACTN1-221ENST00000556571 MPRIPQ6WCQ1 1025 aa16.64■□□□□ 0.25
ACTN1-221ENST00000556571 SMARCC1Q92922 1105 aaPredicted RBP16.64■□□□□ 0.25
ACTN1-221ENST00000556571 INSRP06213 1382 aa16.64■□□□□ 0.25
ACTN1-221ENST00000556571 PALLDQ8WX93 1383 aa16.64■□□□□ 0.25
ACTN1-221ENST00000556571 SHANK3Q9BYB0 1731 aa16.63■□□□□ 0.25
ACTN1-221ENST00000556571 TMF1P82094 1093 aa16.63■□□□□ 0.25
ACTN1-221ENST00000556571 RGPD2P0DJD1 1756 aa16.62■□□□□ 0.25
ACTN1-221ENST00000556571 FLT4P35916 1363 aa16.62■□□□□ 0.25
ACTN1-221ENST00000556571 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
ACTN1-221ENST00000556571 ATP10DQ9P241 1426 aa16.62■□□□□ 0.25
ACTN1-221ENST00000556571 CEP350Q5VT06 3117 aa16.61■□□□□ 0.25
ACTN1-221ENST00000556571 CYP27B1O15528 508 aa16.61■□□□□ 0.25
ACTN1-221ENST00000556571 AK7Q96M32 723 aa16.61■□□□□ 0.25
ACTN1-221ENST00000556571 GPBP1L1Q9HC44 474 aaPredicted RBP16.61■□□□□ 0.25
ACTN1-221ENST00000556571 IFFO2Q5TF58 517 aa16.6■□□□□ 0.25
ACTN1-221ENST00000556571 CDCA8Q53HL2 280 aa16.59■□□□□ 0.25
ACTN1-221ENST00000556571 PIGBQ92521 554 aa16.58■□□□□ 0.24
ACTN1-221ENST00000556571 C5P01031 1676 aa16.57■□□□□ 0.24
ACTN1-221ENST00000556571 NSD3Q9BZ95 1437 aa16.57■□□□□ 0.24
ACTN1-221ENST00000556571 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.57■□□□□ 0.24
ACTN1-221ENST00000556571 NKX1-1Q15270 411 aaPredicted RBP16.57■□□□□ 0.24
ACTN1-221ENST00000556571 SPG7Q9UQ90 795 aa16.57■□□□□ 0.24
ACTN1-221ENST00000556571 PHF14O94880 888 aa16.56■□□□□ 0.24
ACTN1-221ENST00000556571 SSFA2P28290 1259 aa16.56■□□□□ 0.24
ACTN1-221ENST00000556571 AMIGO3Q86WK7 504 aa16.56■□□□□ 0.24
ACTN1-221ENST00000556571 ADCY9O60503 1353 aa16.55■□□□□ 0.24
ACTN1-221ENST00000556571 IGSF1Q8N6C5 1336 aa16.55■□□□□ 0.24
ACTN1-221ENST00000556571 LOC102724428A0A0B4J2F2 783 aa16.55■□□□□ 0.24
ACTN1-221ENST00000556571 SIK1P57059 783 aa16.55■□□□□ 0.24
ACTN1-221ENST00000556571 EMILIN1Q9Y6C2 1016 aa16.55■□□□□ 0.24
ACTN1-221ENST00000556571 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.54■□□□□ 0.247e-7■■■□□ 15.2
ACTN1-221ENST00000556571 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
ACTN1-221ENST00000556571 HSPA6P17066 643 aa16.53■□□□□ 0.24
ACTN1-221ENST00000556571 SMIM5Q71RC9 77 aa16.53■□□□□ 0.24
ACTN1-221ENST00000556571 ZNF526Q8TF50 670 aaPredicted RBP16.53■□□□□ 0.24
ACTN1-221ENST00000556571 CARD14Q9BXL6 1004 aa16.53■□□□□ 0.24
ACTN1-221ENST00000556571 TMOD3Q9NYL9 352 aa16.53■□□□□ 0.24
ACTN1-221ENST00000556571 C4BP0C0L5 1744 aa16.53■□□□□ 0.24
ACTN1-221ENST00000556571 TAF1LQ8IZX4 1826 aa16.52■□□□□ 0.24
ACTN1-221ENST00000556571 LINC00116Q8NCU8 138 aa16.52■□□□□ 0.24
ACTN1-221ENST00000556571 WASHC2AQ641Q2 1341 aa16.51■□□□□ 0.23
ACTN1-221ENST00000556571 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
ACTN1-221ENST00000556571 NCAPD2Q15021 1401 aa16.51■□□□□ 0.23
ACTN1-221ENST00000556571 GNPATO15228 680 aa16.5■□□□□ 0.23
ACTN1-221ENST00000556571 ATP6V1AP38606 617 aa16.5■□□□□ 0.23
ACTN1-221ENST00000556571 IFNL2Q8IZJ0 200 aa16.5■□□□□ 0.23
ACTN1-221ENST00000556571 EYA1Q99502 592 aa16.5■□□□□ 0.23
ACTN1-221ENST00000556571 ASAP1Q9ULH1 1129 aa16.5■□□□□ 0.23
ACTN1-221ENST00000556571 ITPK1Q13572 414 aa16.49■□□□□ 0.23
ACTN1-221ENST00000556571 TOGARAM1Q9Y4F4 1720 aa16.48■□□□□ 0.23
ACTN1-221ENST00000556571 ITGB4P16144 1822 aa16.48■□□□□ 0.23
ACTN1-221ENST00000556571 PHKG2P15735 406 aa16.48■□□□□ 0.23
ACTN1-221ENST00000556571 UBR3Q6ZT12 1888 aa16.48■□□□□ 0.23
ACTN1-221ENST00000556571 PKD1L3Q7Z443 1732 aa16.48■□□□□ 0.23
ACTN1-221ENST00000556571 MMP10P09238 476 aa16.47■□□□□ 0.23
ACTN1-221ENST00000556571 ATG3Q9NT62 314 aa16.47■□□□□ 0.23
ACTN1-221ENST00000556571 KIF20BQ96Q89 1820 aa16.47■□□□□ 0.23
ACTN1-221ENST00000556571 KIF3CO14782 793 aa16.46■□□□□ 0.23
ACTN1-221ENST00000556571 TGFB2P61812 414 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms