RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 ALDH1L2Q3SY69 923 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 BMP2KLQ5H9B9 411 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 GTF2E1P29083 439 aaPredicted RBP20.58■□□□□ 0.89
SYNE3-204ENST00000555759 FAM193AP78312 1265 aa20.58■□□□□ 0.89
SYNE3-204ENST00000555759 NOLC1Q14978 699 aaKnown RBP eCLIP20.58■□□□□ 0.88
SYNE3-204ENST00000555759 CENPHQ9H3R5 247 aa20.58■□□□□ 0.88
SYNE3-204ENST00000555759 CABP2Q9NPB3 220 aa20.58■□□□□ 0.88
SYNE3-204ENST00000555759 POLR3GO15318 223 aaPredicted RBP20.58■□□□□ 0.88
SYNE3-204ENST00000555759 BBXQ8WY36 941 aaPredicted RBP20.58■□□□□ 0.88
SYNE3-204ENST00000555759 CCDC171Q6TFL3 1326 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 KIF5CO60282 957 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 GOLGA6L9A6NEM1 432 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 ODF2Q5BJF6 829 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 GPRASP1Q5JY77 1395 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 CAMK4Q16566 473 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 PRXQ9BXM0 1461 aa20.57■□□□□ 0.88
SYNE3-204ENST00000555759 PTPRGP23470 1445 aa20.56■□□□□ 0.88
SYNE3-204ENST00000555759 PANK2Q9BZ23 570 aa20.56■□□□□ 0.88
SYNE3-204ENST00000555759 CDKL5O76039 1030 aa20.56■□□□□ 0.88
SYNE3-204ENST00000555759 DUSP27Q5VZP5 1158 aa20.56■□□□□ 0.88
SYNE3-204ENST00000555759 FANCD2Q9BXW9 1451 aa20.55■□□□□ 0.88
SYNE3-204ENST00000555759 NAIPQ13075 1403 aa20.55■□□□□ 0.88
SYNE3-204ENST00000555759 PRM3Q9NNZ6 103 aa20.55■□□□□ 0.88
SYNE3-204ENST00000555759 CEP135Q66GS9 1140 aa20.55■□□□□ 0.88
SYNE3-204ENST00000555759 ABCC11Q96J66 1382 aa20.55■□□□□ 0.88
SYNE3-204ENST00000555759 TRIM22Q8IYM9 498 aa20.54■□□□□ 0.88
SYNE3-204ENST00000555759 SNX21Q969T3 373 aa20.54■□□□□ 0.88
SYNE3-204ENST00000555759 CASTP20810 708 aaKnown RBP20.54■□□□□ 0.88
SYNE3-204ENST00000555759 TBC1D2BQ9UPU7 963 aa20.54■□□□□ 0.88
SYNE3-204ENST00000555759 CFAP70Q5T0N1 1121 aa20.54■□□□□ 0.88
SYNE3-204ENST00000555759 LRRFIP2Q9Y608 721 aaKnown RBP20.54■□□□□ 0.88
SYNE3-204ENST00000555759 ATP2B1P20020 1258 aa20.53■□□□□ 0.88
SYNE3-204ENST00000555759 UBE2HP62256 183 aa20.53■□□□□ 0.88
SYNE3-204ENST00000555759 ANKRD30BQ9BXX2 1392 aa20.53■□□□□ 0.88
SYNE3-204ENST00000555759 RBM25P49756 843 aaKnown RBP20.53■□□□□ 0.88
SYNE3-204ENST00000555759 TRERF1Q96PN7 1200 aa20.53■□□□□ 0.88
SYNE3-204ENST00000555759 IVLP07476 585 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 FCHSD2O94868 740 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 TUBB4AP04350 444 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 SNW1Q13573 536 aaKnown RBP20.52■□□□□ 0.88
SYNE3-204ENST00000555759 CCDC83Q8IWF9 413 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 GAPVD1Q14C86 1478 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 TOP1P11387 765 aaKnown RBP20.52■□□□□ 0.88
SYNE3-204ENST00000555759 FEZ1Q99689 392 aa20.52■□□□□ 0.88
SYNE3-204ENST00000555759 TERF1P54274 439 aa20.51■□□□□ 0.87
SYNE3-204ENST00000555759 KIF4BQ2VIQ3 1234 aa20.51■□□□□ 0.87
SYNE3-204ENST00000555759 LIMCH1Q9UPQ0 1083 aa20.51■□□□□ 0.87
SYNE3-204ENST00000555759 G3V3G9 751 aa20.51■□□□□ 0.87
SYNE3-204ENST00000555759 DCAF8Q5TAQ9 597 aa20.51■□□□□ 0.87
SYNE3-204ENST00000555759 C8orf34Q49A92 452 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 CWC27Q6UX04 472 aaKnown RBP20.5■□□□□ 0.87
SYNE3-204ENST00000555759 MAP3K1Q13233 1512 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 IMMTQ16891 758 aaKnown RBP20.5■□□□□ 0.87
SYNE3-204ENST00000555759 KIAA1328Q86T90 577 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 TCEAL9Q9UHQ7 104 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 MX1P20591 662 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 SMARCC1Q92922 1105 aaPredicted RBP20.5■□□□□ 0.87
SYNE3-204ENST00000555759 RBM33Q96EV2 1170 aaKnown RBP20.5■□□□□ 0.87
SYNE3-204ENST00000555759 TMPOP42166 694 aaKnown RBP20.5■□□□□ 0.87
SYNE3-204ENST00000555759 CCDC150Q8NCX0 1101 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 TRIM34Q9BYJ4 488 aa20.5■□□□□ 0.87
SYNE3-204ENST00000555759 GTF2A1P52655 376 aaPredicted RBP20.49■□□□□ 0.87
SYNE3-204ENST00000555759 VPS37DQ86XT2 251 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 DYDC1Q8WWB3 177 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 STX1AQ16623 288 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 CTR9Q6PD62 1173 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 NOL7Q9UMY1 257 aaKnown RBP20.49■□□□□ 0.87
SYNE3-204ENST00000555759 KIF20AO95235 890 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 LMAN1P49257 510 aa20.49■□□□□ 0.87
SYNE3-204ENST00000555759 CCAR1Q8IX12 1150 aaKnown RBP20.49■□□□□ 0.87
SYNE3-204ENST00000555759 TRMT1Q9NXH9 659 aaKnown RBP20.48■□□□□ 0.87
SYNE3-204ENST00000555759 CTNNA3Q9UI47 895 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 TBC1D9Q6ZT07 1266 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 CDK5RAP3Q96JB5 506 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 GPATCH11Q8N954 259 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 SLC12A5Q9H2X9 1139 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 RAB11FIP3O75154 756 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 AIMP1Q12904 312 aaKnown RBP20.48■□□□□ 0.87
SYNE3-204ENST00000555759 SSH1Q8WYL5 1049 aa20.48■□□□□ 0.87
SYNE3-204ENST00000555759 RBM27Q9P2N5 1060 aaKnown RBP20.48■□□□□ 0.87
SYNE3-204ENST00000555759 FERMT3Q86UX7 667 aa20.47■□□□□ 0.87
SYNE3-204ENST00000555759 IGHDP01880 384 aa20.47■□□□□ 0.87
SYNE3-204ENST00000555759 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.47■□□□□ 0.87
SYNE3-204ENST00000555759 ZNF165P49910 485 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 HDGFL1Q5TGJ6 251 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 WASF1Q92558 559 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 TAF4BQ92750 862 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 OGFRQ9NZT2 677 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 DAPK1P53355 1430 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 MAP4K4O95819 1239 aaPredicted RBP20.46■□□□□ 0.87
SYNE3-204ENST00000555759 STX6O43752 255 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 GLRX3O76003 335 aaKnown RBP20.46■□□□□ 0.87
SYNE3-204ENST00000555759 ANKRD18AQ8IVF6 992 aa20.46■□□□□ 0.87
SYNE3-204ENST00000555759 ENOX2Q16206 610 aaKnown RBP20.45■□□□□ 0.86
SYNE3-204ENST00000555759 DNAAF4Q8WXU2 420 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 CCDC43Q96MW1 224 aaKnown RBP20.45■□□□□ 0.86
SYNE3-204ENST00000555759 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 HDAC1Q13547 482 aaPredicted RBP20.45■□□□□ 0.86
SYNE3-204ENST00000555759 NFE2L2Q16236 605 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 C9orf84Q5VXU9 1444 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 617.6 ms