RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 ALDH1L2Q3SY69 923 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 DDX17Q92841 729 aaKnown RBP11.53□□□□□ -0.56
TDP1-210ENST00000554976 SOS2Q07890 1332 aaPredicted RBP11.53□□□□□ -0.56
TDP1-210ENST00000554976 PLEKHG2Q9H7P9 1386 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 OVOS2A0A0G2JMS6 1433 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 CHL1O00533 1208 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 RLBP1P12271 317 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 GNAI1P63096 354 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 NPHP3Q7Z494 1330 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 CACNA1FO60840 1977 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 CEMIPQ8WUJ3 1361 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 KIAA0232Q92628 1395 aa11.53□□□□□ -0.56
TDP1-210ENST00000554976 VAMP4O75379 141 aa11.52□□□□□ -0.56
TDP1-210ENST00000554976 SSH1Q8WYL5 1049 aa11.52□□□□□ -0.56
TDP1-210ENST00000554976 CCDC136Q96JN2 1154 aa11.52□□□□□ -0.56
TDP1-210ENST00000554976 RGS12O14924 1447 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 HTATSF1O43719 755 aaKnown RBP11.52□□□□□ -0.57
TDP1-210ENST00000554976 DCTN1Q14203 1278 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 NBPF6Q5VWK0 638 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 NBPF4Q96M43 638 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 AXIN2Q9Y2T1 843 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 COL16A1Q07092 1604 aaPredicted RBP11.52□□□□□ -0.57
TDP1-210ENST00000554976 ZNF428Q96B54 188 aa11.52□□□□□ -0.57
TDP1-210ENST00000554976 GLI3P10071 1580 aa11.51□□□□□ -0.57
TDP1-210ENST00000554976 NEFMP07197 916 aa11.51□□□□□ -0.57
TDP1-210ENST00000554976 MAP3K5Q99683 1374 aa11.51□□□□□ -0.57
TDP1-210ENST00000554976 PLCH1Q4KWH8 1693 aa11.51□□□□□ -0.57
TDP1-210ENST00000554976 TSPYL6Q8N831 410 aa11.51□□□□□ -0.57
TDP1-210ENST00000554976 PAPPAQ13219 1627 aa11.5□□□□□ -0.57
TDP1-210ENST00000554976 MRC1P22897 1456 aa11.5□□□□□ -0.57
TDP1-210ENST00000554976 MCM10Q7L590 875 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 MRPL50Q8N5N7 158 aaKnown RBP11.49□□□□□ -0.57
TDP1-210ENST00000554976 PANK1Q8TE04 598 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 ERBB3P21860 1342 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 C8orf58Q8NAV2 365 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 GAS2L2Q8NHY3 880 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 C5P01031 1676 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 BCL2L13Q9BXK5 485 aa11.49□□□□□ -0.57
TDP1-210ENST00000554976 TRIM27P14373 513 aa11.48□□□□□ -0.57
TDP1-210ENST00000554976 MEGF6O75095 1541 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 USHBP1Q8N6Y0 703 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 LRRC59Q96AG4 307 aaKnown RBP11.47□□□□□ -0.57
TDP1-210ENST00000554976 SLAIN2Q9P270 581 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 UBR2Q8IWV8 1755 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 NRAPQ86VF7 1730 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 AAMPQ13685 434 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 ZKSCAN2Q63HK3 967 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 ANKRD24Q8TF21 1146 aa11.47□□□□□ -0.57
TDP1-210ENST00000554976 COL14A1Q05707 1796 aaKnown RBP11.47□□□□□ -0.57
TDP1-210ENST00000554976 IL17REQ8NFR9 667 aa11.46□□□□□ -0.57
TDP1-210ENST00000554976 NOB1Q9ULX3 412 aaKnown RBP11.46□□□□□ -0.57
TDP1-210ENST00000554976 KIF16BQ96L93 1317 aa11.46□□□□□ -0.57
TDP1-210ENST00000554976 MVPQ14764 893 aaKnown RBP11.46□□□□□ -0.57
TDP1-210ENST00000554976 SMC4Q9NTJ3 1288 aa11.46□□□□□ -0.57
TDP1-210ENST00000554976 COG6Q9Y2V7 657 aa11.46□□□□□ -0.57
TDP1-210ENST00000554976 COL5A2P05997 1499 aaPredicted RBP11.46□□□□□ -0.58
TDP1-210ENST00000554976 ABCC4O15439 1325 aa11.46□□□□□ -0.58
TDP1-210ENST00000554976 GNAT3A8MTJ3 354 aa11.46□□□□□ -0.58
TDP1-210ENST00000554976 ATF7IPQ6VMQ6 1270 aa11.46□□□□□ -0.58
TDP1-210ENST00000554976 ARHGAP45Q92619 1136 aa11.46□□□□□ -0.58
TDP1-210ENST00000554976 TOGARAM1Q9Y4F4 1720 aa11.46□□□□□ -0.58
TDP1-210ENST00000554976 TWISTNBQ3B726 338 aaPredicted RBP11.45□□□□□ -0.58
TDP1-210ENST00000554976 CLUAP1Q96AJ1 413 aa11.45□□□□□ -0.58
TDP1-210ENST00000554976 BABAM1Q9NWV8 329 aa11.45□□□□□ -0.58
TDP1-210ENST00000554976 LAMB4A4D0S4 1761 aa11.45□□□□□ -0.58
TDP1-210ENST00000554976 PHLPP1O60346 1717 aa11.45□□□□□ -0.58
TDP1-210ENST00000554976 CENPQQ7L2Z9 268 aaPredicted RBP11.44□□□□□ -0.58
TDP1-210ENST00000554976 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
TDP1-210ENST00000554976 LTV1Q96GA3 475 aaPredicted RBP11.44□□□□□ -0.58
TDP1-210ENST00000554976 IGHDP01880 384 aa11.44□□□□□ -0.58
TDP1-210ENST00000554976 DZIP1LQ8IYY4 767 aaKnown RBP11.44□□□□□ -0.58
TDP1-210ENST00000554976 LAS1LQ9Y4W2 734 aaKnown RBP11.44□□□□□ -0.58
TDP1-210ENST00000554976 KRT24Q2M2I5 525 aa11.44□□□□□ -0.58
TDP1-210ENST00000554976 KDM6AO15550 1401 aaPredicted RBP11.43□□□□□ -0.58
TDP1-210ENST00000554976 HEG1Q9ULI3 1381 aa11.43□□□□□ -0.58
TDP1-210ENST00000554976 PCDHB15Q9Y5E8 787 aa11.43□□□□□ -0.58
TDP1-210ENST00000554976 CABLES1Q8TDN4 633 aa11.42□□□□□ -0.58
TDP1-210ENST00000554976 AKAP4Q5JQC9 854 aa11.41□□□□□ -0.58
TDP1-210ENST00000554976 TMEM57Q8N5G2 664 aa11.41□□□□□ -0.58
TDP1-210ENST00000554976 SOS1Q07889 1333 aaPredicted RBP11.41□□□□□ -0.58
TDP1-210ENST00000554976 ZC3H6P61129 1189 aaKnown RBP11.41□□□□□ -0.58
TDP1-210ENST00000554976 MS4A1P11836 297 aa11.41□□□□□ -0.58
TDP1-210ENST00000554976 PXDNLA1KZ92 1463 aa11.4□□□□□ -0.58
TDP1-210ENST00000554976 AMOTQ4VCS5 1084 aa11.4□□□□□ -0.58
TDP1-210ENST00000554976 ZBTB40Q9NUA8 1239 aa11.4□□□□□ -0.58
TDP1-210ENST00000554976 CANXP27824 592 aaKnown RBP11.4□□□□□ -0.58
TDP1-210ENST00000554976 MIS18AQ9NYP9 233 aa11.4□□□□□ -0.58
TDP1-210ENST00000554976 LMOD2Q6P5Q4 547 aa11.39□□□□□ -0.59
TDP1-210ENST00000554976 RTF1Q92541 710 aaKnown RBP11.39□□□□□ -0.59
TDP1-210ENST00000554976 LGR6Q9HBX8 967 aa11.39□□□□□ -0.59
TDP1-210ENST00000554976 RBM19Q9Y4C8 960 aaKnown RBP11.39□□□□□ -0.59
TDP1-210ENST00000554976 SKAP1Q86WV1 359 aa11.39□□□□□ -0.59
TDP1-210ENST00000554976 NWD2Q9ULI1 1742 aa11.39□□□□□ -0.59
TDP1-210ENST00000554976 IPO8O15397 1037 aaKnown RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 TAF7Q15545 349 aaPredicted RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 DDX19BQ9UMR2 479 aa11.38□□□□□ -0.59
TDP1-210ENST00000554976 ZBTB7BO15156 539 aaPredicted RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.38□□□□□ -0.594e-6■■■□□ 19.2
TDP1-210ENST00000554976 TSPYL4Q9UJ04 414 aa11.38□□□□□ -0.59
TDP1-210ENST00000554976 ELL2O00472 640 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms