RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PROM2Q8N271 834 aa14.1□□□□□ -0.15
CCDC88C-206ENST00000553437 ZCRB1Q8TBF4 217 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-206ENST00000553437 KNSTRNQ9Y448 316 aa14.1□□□□□ -0.15
CCDC88C-206ENST00000553437 FAM208AQ9UK61 1670 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-206ENST00000553437 PSDA5PKW4 1024 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-206ENST00000553437 DDX54Q8TDD1 881 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-206ENST00000553437 ACSBG1Q96GR2 724 aa14.09□□□□□ -0.15
CCDC88C-206ENST00000553437 MORC1Q86VD1 984 aa14.08□□□□□ -0.16
CCDC88C-206ENST00000553437 EYA1Q99502 592 aa14.08□□□□□ -0.16
CCDC88C-206ENST00000553437 NCAPD2Q15021 1401 aa14.07□□□□□ -0.16
CCDC88C-206ENST00000553437 EIF4A2Q14240 407 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-206ENST00000553437 R3HDM1Q15032 1099 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-206ENST00000553437 RAPGEF4Q8WZA2 1011 aa14.07□□□□□ -0.16
CCDC88C-206ENST00000553437 TATP17735 454 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-206ENST00000553437 ANKRD26Q9UPS8 1709 aa14.04□□□□□ -0.16
CCDC88C-206ENST00000553437 TXNRD1Q16881 649 aa14.04□□□□□ -0.16
CCDC88C-206ENST00000553437 NBPF14Q5TI25 921 aa14.04□□□□□ -0.16
CCDC88C-206ENST00000553437 RGPD2P0DJD1 1756 aa14.04□□□□□ -0.16
CCDC88C-206ENST00000553437 SBF2Q86WG5 1849 aa14.04□□□□□ -0.16
CCDC88C-206ENST00000553437 CYP27B1O15528 508 aa14.03□□□□□ -0.16
CCDC88C-206ENST00000553437 PRIM1P49642 420 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-206ENST00000553437 RREB1Q92766 1687 aa14.02□□□□□ -0.16
CCDC88C-206ENST00000553437 IGSF1Q8N6C5 1336 aa14.02□□□□□ -0.17
CCDC88C-206ENST00000553437 ANO8Q9HCE9 1232 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-206ENST00000553437 NPC1L1Q9UHC9 1359 aa14.01□□□□□ -0.17
CCDC88C-206ENST00000553437 PCDH11XQ9BZA7 1347 aa14.01□□□□□ -0.17
CCDC88C-206ENST00000553437 PCDH11YQ9BZA8 1340 aa14.01□□□□□ -0.17
CCDC88C-206ENST00000553437 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-206ENST00000553437 NHSQ6T4R5 1651 aa14.01□□□□□ -0.17
CCDC88C-206ENST00000553437 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14□□□□□ -0.17
CCDC88C-206ENST00000553437 NUP188Q5SRE5 1749 aa14□□□□□ -0.17
CCDC88C-206ENST00000553437 RGPD3A6NKT7 1758 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 RGPD4Q7Z3J3 1758 aa13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 IL13P35225 146 aa13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 MTHFSP49914 203 aa13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 NKX1-1Q15270 411 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 SYTL4Q96C24 671 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 MAP2P11137 1827 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-206ENST00000553437 SHANK3Q9BYB0 1731 aa13.98□□□□□ -0.17
CCDC88C-206ENST00000553437 LRRC4BQ9NT99 713 aa13.98□□□□□ -0.17
CCDC88C-206ENST00000553437 SPG7Q9UQ90 795 aa13.98□□□□□ -0.17
CCDC88C-206ENST00000553437 AEBP1Q8IUX7 1158 aa13.97□□□□□ -0.17
CCDC88C-206ENST00000553437 PLEKHG2Q9H7P9 1386 aa13.96□□□□□ -0.17
CCDC88C-206ENST00000553437 SLC15A2Q16348 729 aa13.96□□□□□ -0.17
CCDC88C-206ENST00000553437 PHKG2P15735 406 aa13.95□□□□□ -0.18
CCDC88C-206ENST00000553437 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
CCDC88C-206ENST00000553437 PDGFDQ9GZP0 370 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-206ENST00000553437 STK32BQ9NY57 414 aa13.95□□□□□ -0.18
CCDC88C-206ENST00000553437 SULT6B1Q6IMI4 303 aa13.94□□□□□ -0.18
CCDC88C-206ENST00000553437 IFNL2Q8IZJ0 200 aa13.94□□□□□ -0.18
CCDC88C-206ENST00000553437 KDRP35968 1356 aa13.94□□□□□ -0.18
CCDC88C-206ENST00000553437 BTAF1O14981 1849 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 HOXD11P31277 338 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 KCNQ4P56696 695 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 CNGB1Q14028 1251 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 ZNF827Q17R98 1081 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 MPRIPQ6WCQ1 1025 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 PIGBQ92521 554 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
CCDC88C-206ENST00000553437 PLEKHO1Q53GL0 409 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-206ENST00000553437 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
CCDC88C-206ENST00000553437 DOT1LQ8TEK3 1739 aa13.91□□□□□ -0.18
CCDC88C-206ENST00000553437 DIAPH1O60610 1272 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-206ENST00000553437 AMOTQ4VCS5 1084 aa13.91□□□□□ -0.18
CCDC88C-206ENST00000553437 PAPPAQ13219 1627 aa13.9□□□□□ -0.18
CCDC88C-206ENST00000553437 ZNF530Q6P9A1 599 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-206ENST00000553437 SPON1Q9HCB6 807 aa13.9□□□□□ -0.18
CCDC88C-206ENST00000553437 CCNL1Q9UK58 526 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-206ENST00000553437 COL3A1P02461 1466 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-206ENST00000553437 PALLDQ8WX93 1383 aa13.89□□□□□ -0.19
CCDC88C-206ENST00000553437 ZBTB7AO95365 584 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 HSP90AB1P08238 724 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 HMOX1P09601 288 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 YY1P25490 414 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 SMARCC1Q92922 1105 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 DCAF5Q96JK2 942 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 TMOD3Q9NYL9 352 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 UTRNP46939 3433 aa13.88□□□□□ -0.19
CCDC88C-206ENST00000553437 TOGARAM1Q9Y4F4 1720 aa13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 CEP350Q5VT06 3117 aa13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 ERVV-2B6SEH9 535 aa13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 PPP2R1AP30153 589 aa13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 ASAP1Q9ULH1 1129 aa13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 KDM6AO15550 1401 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-206ENST00000553437 CASZ1Q86V15 1759 aa13.86□□□□□ -0.19
CCDC88C-206ENST00000553437 PTGER2P43116 358 aa13.86□□□□□ -0.19
CCDC88C-206ENST00000553437 ATG3Q9NT62 314 aa13.86□□□□□ -0.19
CCDC88C-206ENST00000553437 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-206ENST00000553437 PNPLA7Q6ZV29 1317 aa13.86□□□□□ -0.19
CCDC88C-206ENST00000553437 C1orf141Q5JVX7 400 aa13.85□□□□□ -0.19
CCDC88C-206ENST00000553437 SGIP1Q9BQI5 828 aa13.85□□□□□ -0.19
CCDC88C-206ENST00000553437 MTFR1LQ9H019 292 aa13.85□□□□□ -0.19
CCDC88C-206ENST00000553437 LY75O60449 1722 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 LOC102724428A0A0B4J2F2 783 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 SIK1P57059 783 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 MTHFSDQ2M296 383 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 AKAP4Q5JQC9 854 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 IFFO2Q5TF58 517 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 TFCP2L1Q9NZI6 479 aa13.84□□□□□ -0.19
CCDC88C-206ENST00000553437 KAT6BQ8WYB5 2073 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms