RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ALDH1L2Q3SY69 923 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 WASF1Q92558 559 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 HOOK2Q96ED9 719 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 TEX13AQ9BXU3 409 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-211ENST00000543710 FAM13BQ9NYF5 915 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 NKTRP30414 1462 aaKnown RBP9.28□□□□□ -0.92
VPS13D-211ENST00000543710 KRT32Q14532 448 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 WDR33Q9C0J8 1336 aaKnown RBP9.28□□□□□ -0.92
VPS13D-211ENST00000543710 GZF1Q9H116 711 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-211ENST00000543710 UGGT2Q9NYU1 1516 aa9.28□□□□□ -0.92
VPS13D-211ENST00000543710 ERLIN2O94905 339 aa9.27□□□□□ -0.92
VPS13D-211ENST00000543710 CCDC125Q86Z20 511 aa9.27□□□□□ -0.92
VPS13D-211ENST00000543710 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.27□□□□□ -0.922e-7■■■■■ 35.6
VPS13D-211ENST00000543710 SENP3-EIF4A1A0A087X0R7 540 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 TXLNAP40222 546 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 RBM6P78332 1123 aaKnown RBP9.27□□□□□ -0.93
VPS13D-211ENST00000543710 SOGA3Q5TF21 947 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 ZSCAN29Q8IWY8 852 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-211ENST00000543710 RAB11FIP3O75154 756 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 NOP2P46087 812 aaKnown RBP9.27□□□□□ -0.93
VPS13D-211ENST00000543710 ANKRD18AQ8IVF6 992 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 NASPP49321 788 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-211ENST00000543710 TPRNQ4KMQ1 711 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 SLF2Q8IX21 1173 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 OGFOD1Q8N543 542 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 FAM177BA6PVY3 158 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 FAM196AQ6ZSG2 479 aa9.27□□□□□ -0.93
VPS13D-211ENST00000543710 ERLIN1O75477 346 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 PPP2R1AP30153 589 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 CAGE1Q8TC20 777 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 BICD2Q8TD16 824 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 EIF3JO75822 258 aaKnown RBP9.26□□□□□ -0.93
VPS13D-211ENST00000543710 MCM5P33992 734 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 TMEM132AQ24JP5 1023 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 WDR78Q5VTH9 848 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 VTI1AQ96AJ9 217 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 SCAF11Q99590 1463 aaKnown RBP9.26□□□□□ -0.93
VPS13D-211ENST00000543710 DNAI2Q9GZS0 605 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 SMTNL1A8MU46 457 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 POTEB2H3BUK9 544 aa9.26□□□□□ -0.93
VPS13D-211ENST00000543710 UBTFL1P0CB47 393 aaPredicted RBP9.26□□□□□ -0.93
VPS13D-211ENST00000543710 PYM1Q9BRP8 204 aaKnown RBP9.25□□□□□ -0.93
VPS13D-211ENST00000543710 MAGEC2Q9UBF1 373 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-211ENST00000543710 TBC1D2BQ9UPU7 963 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 LPXNO60711 386 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 USP8P40818 1118 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 TSPYL4Q9UJ04 414 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 CEP131Q9UPN4 1083 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 ASXL2Q76L83 1435 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 POLR3GO15318 223 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-211ENST00000543710 NEMFO60524 1076 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 TUBB4AP04350 444 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 GNAI2P04899 355 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 XPCQ01831 940 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-211ENST00000543710 HSP90AB3PQ58FF7 597 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 IL16Q14005 1332 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 ATF7IPQ6VMQ6 1270 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 DDX11Q96FC9 970 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 GBP3Q9H0R5 595 aa9.25□□□□□ -0.93
VPS13D-211ENST00000543710 ARHGAP27Q6ZUM4 889 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 RIC3Q7Z5B4 369 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 RALYLQ86SE5 291 aaKnown RBP9.24□□□□□ -0.93
VPS13D-211ENST00000543710 PHAXQ9H814 394 aaKnown RBP9.24□□□□□ -0.93
VPS13D-211ENST00000543710 FOXO3O43524 673 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 CCDC192P0DO97 292 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 SUPT20HQ8NEM7 779 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 GPBP1L1Q9HC44 474 aaPredicted RBP9.24□□□□□ -0.93
VPS13D-211ENST00000543710 ZNF219Q9P2Y4 722 aaPredicted RBP9.24□□□□□ -0.93
VPS13D-211ENST00000543710 K7ELQ4 463 aaPredicted RBP9.24□□□□□ -0.93
VPS13D-211ENST00000543710 PAF1Q8N7H5 531 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 NFXL1Q6ZNB6 911 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 HOMER1Q86YM7 354 aa9.24□□□□□ -0.93
VPS13D-211ENST00000543710 APBB1O00213 710 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 TRIM21P19474 475 aaKnown RBP9.23□□□□□ -0.93
VPS13D-211ENST00000543710 STIM1Q13586 685 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 GCC2Q8IWJ2 1684 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 FAM107BQ9H098 131 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 NAIPQ13075 1403 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 B4DLN1 442 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 MRPL12P52815 198 aaKnown RBP9.23□□□□□ -0.93
VPS13D-211ENST00000543710 CCDC57Q2TAC2 916 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 MCTP1Q6DN14 999 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 PCMTD1Q96MG8 357 aaPredicted RBP9.23□□□□□ -0.93
VPS13D-211ENST00000543710 EYA3Q99504 573 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 GRIN2AQ12879 1464 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 LEKR1Q6ZMV7 388 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 CTNNA3Q9UI47 895 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 COG6Q9Y2V7 657 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 RTEL1-TNFRSF6BF6WH68 1400 aa9.23□□□□□ -0.93
VPS13D-211ENST00000543710 APAF1O14727 1248 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 RPAP2Q8IXW5 612 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 NOL7Q9UMY1 257 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 RTCBQ9Y3I0 505 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 KCNA6P17658 529 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 IGHMBP2P38935 993 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 MPHOSPH8Q99549 860 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 ZNHIT6Q9NWK9 470 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 CAVIN2O95810 425 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 NFKBIBQ15653 356 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 SOS1Q07889 1333 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms