RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 KLHL34Q8N239 644 aa11.42□□□□□ -0.58
NEDD8-207ENST00000533242 IP6K1Q92551 441 aa11.42□□□□□ -0.58
NEDD8-207ENST00000533242 DDX10Q13206 875 aaKnown RBP11.42□□□□□ -0.58
NEDD8-207ENST00000533242 DDX54Q8TDD1 881 aaKnown RBP11.42□□□□□ -0.58
NEDD8-207ENST00000533242 TFCP2L1Q9NZI6 479 aa11.41□□□□□ -0.58
NEDD8-207ENST00000533242 PELP1Q8IZL8 1130 aaKnown RBP11.41□□□□□ -0.58
NEDD8-207ENST00000533242 TMC1Q8TDI8 760 aa11.41□□□□□ -0.58
NEDD8-207ENST00000533242 TERF2IPQ9NYB0 399 aa11.41□□□□□ -0.58
NEDD8-207ENST00000533242 NSD2O96028 1365 aa11.41□□□□□ -0.58
NEDD8-207ENST00000533242 NLGN2Q8NFZ4 835 aa11.4□□□□□ -0.58
NEDD8-207ENST00000533242 PUS7Q96PZ0 661 aaKnown RBP11.4□□□□□ -0.58
NEDD8-207ENST00000533242 C5P01031 1676 aa11.4□□□□□ -0.58
NEDD8-207ENST00000533242 A0A1W2PP64 1363 aa11.4□□□□□ -0.59
NEDD8-207ENST00000533242 ADRA2BP18089 450 aa11.4□□□□□ -0.59
NEDD8-207ENST00000533242 PRIM1P49642 420 aaKnown RBP11.4□□□□□ -0.59
NEDD8-207ENST00000533242 SLC12A5Q9H2X9 1139 aa11.4□□□□□ -0.59
NEDD8-207ENST00000533242 TIMELESSQ9UNS1 1208 aa11.4□□□□□ -0.59
NEDD8-207ENST00000533242 TAF1LQ8IZX4 1826 aa11.39□□□□□ -0.59
NEDD8-207ENST00000533242 GRIN3BO60391 1043 aa11.39□□□□□ -0.59
NEDD8-207ENST00000533242 LTV1Q96GA3 475 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-207ENST00000533242 SYTL4Q96C24 671 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-207ENST00000533242 TONSLQ96HA7 1378 aa11.38□□□□□ -0.59
NEDD8-207ENST00000533242 KCNQ4P56696 695 aa11.37□□□□□ -0.59
NEDD8-207ENST00000533242 IFFO2Q5TF58 517 aa11.37□□□□□ -0.59
NEDD8-207ENST00000533242 ZCRB1Q8TBF4 217 aaKnown RBP11.37□□□□□ -0.59
NEDD8-207ENST00000533242 CARD11Q9BXL7 1154 aa11.37□□□□□ -0.59
NEDD8-207ENST00000533242 CCNL1Q9UK58 526 aaPredicted RBP11.37□□□□□ -0.59
NEDD8-207ENST00000533242 MEGF6O75095 1541 aa11.37□□□□□ -0.59
NEDD8-207ENST00000533242 YBX3P16989 372 aaKnown RBP eCLIP11.37□□□□□ -0.59
NEDD8-207ENST00000533242 HMGB2P26583 209 aaKnown RBP11.36□□□□□ -0.59
NEDD8-207ENST00000533242 HOXC9P31274 260 aa11.36□□□□□ -0.59
NEDD8-207ENST00000533242 MAP3K19Q56UN5 1328 aa11.36□□□□□ -0.59
NEDD8-207ENST00000533242 RTL1A6NKG5 1358 aa11.36□□□□□ -0.59
NEDD8-207ENST00000533242 COL23A1Q86Y22 540 aaPredicted RBP11.36□□□□□ -0.59
NEDD8-207ENST00000533242 USP47Q96K76 1375 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 COG3Q96JB2 828 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 ATP10DQ9P241 1426 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 MSH5O43196 834 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 AMPHP49418 695 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 CGNL1Q0VF96 1302 aa11.35□□□□□ -0.59
NEDD8-207ENST00000533242 ITGB4P16144 1822 aa11.34□□□□□ -0.59
NEDD8-207ENST00000533242 CD2APQ9Y5K6 639 aa11.34□□□□□ -0.59
NEDD8-207ENST00000533242 FLAD1Q8NFF5 587 aa11.34□□□□□ -0.59
NEDD8-207ENST00000533242 C4BP0C0L5 1744 aa11.33□□□□□ -0.6
NEDD8-207ENST00000533242 KIF20BQ96Q89 1820 aa11.33□□□□□ -0.6
NEDD8-207ENST00000533242 UBR3Q6ZT12 1888 aa11.33□□□□□ -0.6
NEDD8-207ENST00000533242 TOGARAM1Q9Y4F4 1720 aa11.32□□□□□ -0.6
NEDD8-207ENST00000533242 ADCY9O60503 1353 aa11.32□□□□□ -0.6
NEDD8-207ENST00000533242 MSL1Q68DK7 614 aa11.32□□□□□ -0.6
NEDD8-207ENST00000533242 SMG6Q86US8 1419 aaKnown RBP11.31□□□□□ -0.6
NEDD8-207ENST00000533242 PKD1L3Q7Z443 1732 aa11.31□□□□□ -0.6
NEDD8-207ENST00000533242 NBPF6Q5VWK0 638 aa11.31□□□□□ -0.6
NEDD8-207ENST00000533242 RAPGEF4Q8WZA2 1011 aa11.31□□□□□ -0.6
NEDD8-207ENST00000533242 NBPF4Q96M43 638 aa11.31□□□□□ -0.6
NEDD8-207ENST00000533242 SLC24A1O60721 1099 aa11.3□□□□□ -0.6
NEDD8-207ENST00000533242 TATP17735 454 aaPredicted RBP11.3□□□□□ -0.6
NEDD8-207ENST00000533242 PALLDQ8WX93 1383 aa11.3□□□□□ -0.6
NEDD8-207ENST00000533242 PCDH11XQ9BZA7 1347 aa11.3□□□□□ -0.6
NEDD8-207ENST00000533242 PCDH11YQ9BZA8 1340 aa11.3□□□□□ -0.6
NEDD8-207ENST00000533242 FBLN1P23142 703 aa11.3□□□□□ -0.6
NEDD8-207ENST00000533242 GPBP1L1Q9HC44 474 aaPredicted RBP11.3□□□□□ -0.6
NEDD8-207ENST00000533242 TESK2Q96S53 571 aa11.29□□□□□ -0.6
NEDD8-207ENST00000533242 MAP2P11137 1827 aaKnown RBP11.29□□□□□ -0.6
NEDD8-207ENST00000533242 NSD3Q9BZ95 1437 aa11.29□□□□□ -0.6
NEDD8-207ENST00000533242 USHBP1Q8N6Y0 703 aa11.29□□□□□ -0.6
NEDD8-207ENST00000533242 SMARCC1Q92922 1105 aaPredicted RBP11.29□□□□□ -0.6
NEDD8-207ENST00000533242 INSRP06213 1382 aa11.28□□□□□ -0.6
NEDD8-207ENST00000533242 CICQ96RK0 1608 aaPredicted RBP11.28□□□□□ -0.6
NEDD8-207ENST00000533242 HSPA6P17066 643 aa11.28□□□□□ -0.6
NEDD8-207ENST00000533242 RRS1Q15050 365 aaKnown RBP11.27□□□□□ -0.6
NEDD8-207ENST00000533242 KIF24Q5T7B8 1368 aa11.27□□□□□ -0.6
NEDD8-207ENST00000533242 KIF13BQ9NQT8 1826 aa11.27□□□□□ -0.61
NEDD8-207ENST00000533242 AK7Q96M32 723 aa11.27□□□□□ -0.61
NEDD8-207ENST00000533242 SUPT16HQ9Y5B9 1047 aaKnown RBP11.27□□□□□ -0.61
NEDD8-207ENST00000533242 FYB1O15117 783 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 IGSF1Q8N6C5 1336 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 ST20-MTHFSA0A0A6YYL1 179 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 MPRIPQ6WCQ1 1025 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 FLT4P35916 1363 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 ANKRD26Q9UPS8 1709 aa11.26□□□□□ -0.61
NEDD8-207ENST00000533242 GGNBP2Q9H3C7 697 aa11.25□□□□□ -0.61
NEDD8-207ENST00000533242 KIAA1551Q9HCM1 1747 aa11.25□□□□□ -0.61
NEDD8-207ENST00000533242 NCAPD2Q15021 1401 aa11.25□□□□□ -0.61
NEDD8-207ENST00000533242 CYP27B1O15528 508 aa11.25□□□□□ -0.61
NEDD8-207ENST00000533242 HSP90AB2PQ58FF8 381 aa11.24□□□□□ -0.61
NEDD8-207ENST00000533242 ZNF526Q8TF50 670 aaPredicted RBP11.24□□□□□ -0.61
NEDD8-207ENST00000533242 HSPA5P11021 654 aaKnown RBP11.24□□□□□ -0.61
NEDD8-207ENST00000533242 SSFA2P28290 1259 aa11.24□□□□□ -0.61
NEDD8-207ENST00000533242 NKX1-1Q15270 411 aaPredicted RBP11.24□□□□□ -0.61
NEDD8-207ENST00000533242 WASHC2AQ641Q2 1341 aa11.23□□□□□ -0.61
NEDD8-207ENST00000533242 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.23□□□□□ -0.61
NEDD8-207ENST00000533242 AMIGO3Q86WK7 504 aa11.23□□□□□ -0.61
NEDD8-207ENST00000533242 ZNF831Q5JPB2 1677 aa11.23□□□□□ -0.61
NEDD8-207ENST00000533242 PHF14O94880 888 aa11.23□□□□□ -0.61
NEDD8-207ENST00000533242 PIGBQ92521 554 aa11.23□□□□□ -0.61
NEDD8-207ENST00000533242 N4BP2Q86UW6 1770 aaPredicted RBP11.22□□□□□ -0.61
NEDD8-207ENST00000533242 KIF3CO14782 793 aa11.22□□□□□ -0.61
NEDD8-207ENST00000533242 TMF1P82094 1093 aa11.21□□□□□ -0.61
NEDD8-207ENST00000533242 LINC00116Q8NCU8 138 aa11.21□□□□□ -0.61
NEDD8-207ENST00000533242 SPG7Q9UQ90 795 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms