RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 PPIP5K1Q6PFW1 1433 aa17.02■□□□□ 0.32
PCF11-204ENST00000530660 ZNF592Q92610 1267 aa17.02■□□□□ 0.32
PCF11-204ENST00000530660 TSPYL1Q9H0U9 437 aa17.02■□□□□ 0.32
PCF11-204ENST00000530660 SLC52A1Q9NWF4 448 aa17.02■□□□□ 0.32
PCF11-204ENST00000530660 DUOX2Q9NRD8 1548 aa17.02■□□□□ 0.32
PCF11-204ENST00000530660 U2AF1L5P0DN76 240 aaPredicted RBP17.02■□□□□ 0.31
PCF11-204ENST00000530660 SRPK2P78362 688 aaKnown RBP17.02■□□□□ 0.31
PCF11-204ENST00000530660 U2AF1Q01081 240 aaKnown RBP eCLIP17.02■□□□□ 0.31
PCF11-204ENST00000530660 RTF1Q92541 710 aaKnown RBP17.02■□□□□ 0.31
PCF11-204ENST00000530660 IFT57Q9NWB7 429 aa17.02■□□□□ 0.31
PCF11-204ENST00000530660 KANK1Q14678 1352 aa17.02■□□□□ 0.31
PCF11-204ENST00000530660 TMX3Q96JJ7 454 aa17.01■□□□□ 0.31
PCF11-204ENST00000530660 SLC12A5Q9H2X9 1139 aa17.01■□□□□ 0.31
PCF11-204ENST00000530660 LOC102724159A0A0B4J2E5 919 aa17.01■□□□□ 0.31
PCF11-204ENST00000530660 CYP2C19P33261 490 aa17.01■□□□□ 0.31
PCF11-204ENST00000530660 PWP2Q15269 919 aaKnown RBP17.01■□□□□ 0.31
PCF11-204ENST00000530660 FBXO38Q6PIJ6 1188 aa17■□□□□ 0.31
PCF11-204ENST00000530660 GIMAP6Q6P9H5 292 aa17■□□□□ 0.31
PCF11-204ENST00000530660 ZNF397Q8NF99 534 aaPredicted RBP17■□□□□ 0.31
PCF11-204ENST00000530660 GCC1Q96CN9 775 aa17■□□□□ 0.31
PCF11-204ENST00000530660 NOL10Q9BSC4 688 aaKnown RBP17■□□□□ 0.31
PCF11-204ENST00000530660 RNF216Q9NWF9 866 aaPredicted RBP17■□□□□ 0.31
PCF11-204ENST00000530660 NPHP1O15259 732 aa16.99■□□□□ 0.31
PCF11-204ENST00000530660 CCDC183Q5T5S1 534 aa16.99■□□□□ 0.31
PCF11-204ENST00000530660 SIRT2Q8IXJ6 389 aa16.99■□□□□ 0.31
PCF11-204ENST00000530660 NEK4P51957 841 aa16.99■□□□□ 0.31
PCF11-204ENST00000530660 C16orf71Q8IYS4 520 aaPredicted RBP16.99■□□□□ 0.31
PCF11-204ENST00000530660 GTF3C6Q969F1 213 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 FAM53CQ9NYF3 392 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 ZNF215Q9UL58 517 aaPredicted RBP16.98■□□□□ 0.31
PCF11-204ENST00000530660 ADGRF5Q8IZF2 1346 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 PLEKHM2Q8IWE5 1019 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 GYS2P54840 703 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 HDAC5Q9UQL6 1122 aa16.98■□□□□ 0.31
PCF11-204ENST00000530660 CFAP53Q96M91 514 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 CLTCL1P53675 1640 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 MX1P20591 662 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 CCDC186Q7Z3E2 898 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 NEK11Q8NG66 645 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 ZNF446Q9NWS9 450 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 NRBP1Q9UHY1 535 aa16.97■□□□□ 0.31
PCF11-204ENST00000530660 ELF2Q15723 593 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 ZNF518AQ6AHZ1 1483 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 PRR29P0C7W0 189 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 NFATC2IPQ8NCF5 419 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 EFCC1Q9HA90 598 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 GOLGA6L6A8MZA4 724 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 TRIM66O15016 1216 aa16.96■□□□□ 0.31
PCF11-204ENST00000530660 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
PCF11-204ENST00000530660 BRD2P25440 801 aaKnown RBP16.96■□□□□ 0.31
PCF11-204ENST00000530660 TPM3P06753 285 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 OTUD7AQ8TE49 926 aaPredicted RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 SPAG9O60271 1321 aaKnown RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 TRPM2O94759 1503 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 ZBTB7BO15156 539 aaPredicted RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 NOP2P46087 812 aaKnown RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 INTS3Q68E01 1043 aaKnown RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 GEMIN8Q9NWZ8 242 aaKnown RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 CNPY2Q9Y2B0 182 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 PTPRTO14522 1441 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 NOS1P29475 1434 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 CT47B1P0C2W7 299 aaPredicted RBP16.95■□□□□ 0.3
PCF11-204ENST00000530660 PSEN1P49768 467 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 C10orf67Q8IYJ2 551 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 PAXBP1Q9Y5B6 917 aa16.95■□□□□ 0.3
PCF11-204ENST00000530660 IPO8O15397 1037 aaKnown RBP16.94■□□□□ 0.3
PCF11-204ENST00000530660 TPD52L1Q16890 204 aaPredicted RBP16.94■□□□□ 0.3
PCF11-204ENST00000530660 TTC22Q5TAA0 569 aa16.94■□□□□ 0.3
PCF11-204ENST00000530660 DHX16O60231 1041 aaKnown RBP16.94■□□□□ 0.3
PCF11-204ENST00000530660 KIF1BPQ96EK5 621 aa16.94■□□□□ 0.3
PCF11-204ENST00000530660 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.94■□□□□ 0.3
PCF11-204ENST00000530660 RASSF4Q9H2L5 321 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 YY1AP1Q9H869 796 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 SYT10Q6XYQ8 523 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 LCMT1Q9UIC8 334 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 MMP14P50281 582 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 GTF2A1P52655 376 aaPredicted RBP16.93■□□□□ 0.3
PCF11-204ENST00000530660 FUCA2Q9BTY2 467 aa16.93■□□□□ 0.3
PCF11-204ENST00000530660 DRC7Q8IY82 874 aa16.92■□□□□ 0.3
PCF11-204ENST00000530660 TRIM35Q9UPQ4 493 aa16.92■□□□□ 0.3
PCF11-204ENST00000530660 SDSP20132 328 aa16.92■□□□□ 0.3
PCF11-204ENST00000530660 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.92■□□□□ 0.32e-39■□□□□ 9.9
PCF11-204ENST00000530660 CEP135Q66GS9 1140 aa16.91■□□□□ 0.3
PCF11-204ENST00000530660 TRAK1Q9UPV9 953 aa16.91■□□□□ 0.3
PCF11-204ENST00000530660 APBB1O00213 710 aa16.91■□□□□ 0.3
PCF11-204ENST00000530660 APPP05067 770 aa16.91■□□□□ 0.3
PCF11-204ENST00000530660 SIRT1Q96EB6 747 aa16.91■□□□□ 0.3
PCF11-204ENST00000530660 TMPOP42166 694 aaKnown RBP16.9■□□□□ 0.3
PCF11-204ENST00000530660 CD109Q6YHK3 1445 aa16.9■□□□□ 0.3
PCF11-204ENST00000530660 POLR3GO15318 223 aaPredicted RBP16.9■□□□□ 0.3
PCF11-204ENST00000530660 SRCIN1Q9C0H9 1055 aa16.9■□□□□ 0.3
PCF11-204ENST00000530660 TOMM22Q9NS69 142 aa16.9■□□□□ 0.3
PCF11-204ENST00000530660 POLKQ9UBT6 870 aa16.9■□□□□ 0.3
PCF11-204ENST00000530660 ABCA6Q8N139 1617 aa16.89■□□□□ 0.29
PCF11-204ENST00000530660 USP27XA6NNY8 438 aa16.89■□□□□ 0.29
PCF11-204ENST00000530660 KRBA2Q6ZNG9 492 aa16.89■□□□□ 0.29
PCF11-204ENST00000530660 EP400NLQ6ZTU2 488 aa16.89■□□□□ 0.29
PCF11-204ENST00000530660 ATAD2Q6PL18 1390 aa16.89■□□□□ 0.29
PCF11-204ENST00000530660 FIBPO43427 364 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms