RNA–Protein interactions for RNA: ENST00000523288.5

FAM49B-225, Transcript of family with sequence similarity 49 member B, human

TSL 2

Gene FAM49B, Length 4,552 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM49B-225	ENST00000523288	GOLGA6L1	Q8N7Z2	621 aa		4.65	□□□□□ -1.67
FAM49B-225	ENST00000523288	UBXN6	Q9BZV1	441 aa		4.65	□□□□□ -1.67
FAM49B-225	ENST00000523288	A1CF	Q9NQ94	594 aa	Known RBP	4.65	□□□□□ -1.67
FAM49B-225	ENST00000523288	CWC15	Q9P013	229 aa	Known RBP	4.65	□□□□□ -1.67
FAM49B-225	ENST00000523288	CCDC189	A1A4V9	331 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	SMTNL1	A8MU46	457 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	ZNF853	P0CG23	659 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	HSCB	Q8IWL3	235 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	MSL3	Q8N5Y2	521 aa	Known RBP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	ZNF397	Q8NF99	534 aa	Predicted RBP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUP160	Q12769	1436 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288		A0A1B0GUL7	405 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	ERCC3	P19447	782 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	XPC	Q01831	940 aa	Predicted RBP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	PKD2	Q13563	968 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	NRDC	O43847	1150 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	ZSCAN23	Q3MJ62	389 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	NOM1	Q5C9Z4	860 aa	Known RBP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	TEX13A	Q9BXU3	409 aa	Predicted RBP	4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	MYO5C	Q9NQX4	1742 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	PIK3C2G	O75747	1445 aa		4.64	□□□□□ -1.67
FAM49B-225	ENST00000523288	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	TMF1	P82094	1093 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	CT47A1	Q5JQC4	288 aa	Predicted RBP	4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	ANKRD23	Q86SG2	305 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	MORC1	Q86VD1	984 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	GPRASP1	Q5JY77	1395 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	PZP	P20742	1482 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	LOC102724159	A0A0B4J2E5	919 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	CTAGE5	O15320	804 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	TUBB4A	P04350	444 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	RAD51AP2	Q09MP3	1159 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	PWP2	Q15269	919 aa	Known RBP	4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	NLRP13	Q86W25	1043 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	SYTL4	Q96C24	671 aa	Predicted RBP	4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	MYO3A	Q8NEV4	1616 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	MYOM2	P54296	1465 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	RAD54L2	Q9Y4B4	1467 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	AMPH	P49418	695 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUTM1	Q86Y26	1132 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	COQ9	O75208	318 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	NCBP1	Q09161	790 aa	Known RBP	4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	TMEM132A	Q24JP5	1023 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	TSGA10IP	Q3SY00	556 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	IQSEC2	Q5JU85	1478 aa		4.63	□□□□□ -1.67
FAM49B-225	ENST00000523288	ADGRB2	O60241	1585 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	TMCO5B	A8MYB1	307 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	PATL2	C9JE40	543 aa	Known RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	ATF3	P18847	181 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	PIP4K2B	P78356	416 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	SF3B2	Q13435	895 aa	Known RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	CWC22	Q9HCG8	908 aa	Known RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.62	□□□□□ -1.67	3e-7	■■■■■ 104.2
FAM49B-225	ENST00000523288	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.62	□□□□□ -1.67	3e-6	■■□□□ 12.1
FAM49B-225	ENST00000523288	RTL1	A6NKG5	1358 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	IFT140	Q96RY7	1462 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	ZBTB22	O15209	634 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	ICA1	Q05084	483 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	MTA1	Q13330	715 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	POLR3A	O14802	1390 aa	Predicted RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUP155	O75694	1391 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	IQGAP2	Q13576	1575 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	INO80	Q9ULG1	1556 aa	Predicted RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	ATXN2	Q99700	1313 aa	Known RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	ANKRD18B	A2A2Z9	1011 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUCB2	P80303	420 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	RBSN	Q9H1K0	784 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	CEP152	O94986	1710 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	AATK	Q6ZMQ8	1374 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	MBD3	O95983	291 aa		4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	IRX1	P78414	480 aa	Predicted RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.62	□□□□□ -1.67
FAM49B-225	ENST00000523288	SHANK2	Q9UPX8	1470 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	KIF13A	Q9H1H9	1805 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	EIF3J	O75822	258 aa	Known RBP	4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	MAGEA9	P43362	315 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	GOLGA5	Q8TBA6	731 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	USP47	Q96K76	1375 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	GOLIM4	O00461	696 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	MCTP2	Q6DN12	878 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	LMBRD1	Q9NUN5	540 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	PTPRC	P08575	1304 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	U2AF2	P26368	475 aa	Known RBP eCLIP	4.61	□□□□□ -1.67	1e-8	■■■□□ 15.5
FAM49B-225	ENST00000523288	DUSP27	Q5VZP5	1158 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	TMED8	Q6PL24	325 aa	Predicted RBP	4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	C22orf23	Q9BZE7	217 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	CXorf56	Q9H5V9	222 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	POLK	Q9UBT6	870 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	SUFU	Q9UMX1	484 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	CHMP3	Q9Y3E7	222 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	EFCAB6	Q5THR3	1501 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	CCDC141	Q6ZP82	1450 aa		4.61	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUTM2B	A6NNL0	878 aa	Predicted RBP	4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	NUTM2E	B1AL46	878 aa	Predicted RBP	4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	IRF6	O14896	467 aa		4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	IVL	P07476	585 aa		4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	MAP9	Q49MG5	647 aa		4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	TEX35	Q5T0J7	233 aa		4.6	□□□□□ -1.67
FAM49B-225	ENST00000523288	FAM43B	Q6ZT52	329 aa	Predicted RBP	4.6	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms