RNA–Protein interactions for RNA: ENST00000506783.5

PHF3-208, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 3,700 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-208ENST00000506783 NEO1Q92859 1461 aa11.7□□□□□ -0.54
PHF3-208ENST00000506783 C9orf78Q9NZ63 289 aaPredicted RBP11.7□□□□□ -0.54
PHF3-208ENST00000506783 ACEP12821 1306 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 ERBB4Q15303 1308 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 PNMA6EA0A0J9YXQ4 647 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 DRC7Q8IY82 874 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 NSFL1CQ9UNZ2 370 aaKnown RBP11.69□□□□□ -0.54
PHF3-208ENST00000506783 KAT6BQ8WYB5 2073 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 PREX2Q70Z35 1606 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 UBTFL1P0CB47 393 aaPredicted RBP11.69□□□□□ -0.54
PHF3-208ENST00000506783 SHROOM2Q13796 1616 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 KCNA6P17658 529 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 FAM173BQ6P4H8 233 aa11.69□□□□□ -0.54
PHF3-208ENST00000506783 CHMP4BQ9H444 224 aaKnown RBP11.69□□□□□ -0.54
PHF3-208ENST00000506783 PRDM15P57071 1507 aaPredicted RBP11.68□□□□□ -0.54
PHF3-208ENST00000506783 PIP4K2BP78356 416 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 TEFQ10587 303 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 PA2G4Q9UQ80 394 aaKnown RBP11.68□□□□□ -0.54
PHF3-208ENST00000506783 REC8O95072 547 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 MCCP23508 829 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 CAMK4Q16566 473 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 PRDM10Q9NQV6 1147 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 PALD1Q9ULE6 856 aa11.68□□□□□ -0.54
PHF3-208ENST00000506783 ZC3H6P61129 1189 aaKnown RBP11.68□□□□□ -0.54
PHF3-208ENST00000506783 TAF7Q15545 349 aaPredicted RBP11.68□□□□□ -0.54
PHF3-208ENST00000506783 MAST1Q9Y2H9 1570 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 UNC5CLQ8IV45 518 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 LRRC59Q96AG4 307 aaKnown RBP11.67□□□□□ -0.54
PHF3-208ENST00000506783 TTC22Q5TAA0 569 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 KLHDC4Q8TBB5 520 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 GOLGA6L4A6NEF3 574 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 GNAI2P04899 355 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 IL13P35225 146 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 CEP85Q6P2H3 762 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 NECAB1Q8N987 351 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 CCDC8Q9H0W5 538 aaPredicted RBP11.67□□□□□ -0.54
PHF3-208ENST00000506783 PPP6R1Q9UPN7 881 aa11.67□□□□□ -0.54
PHF3-208ENST00000506783 ERC2O15083 957 aa11.66□□□□□ -0.54
PHF3-208ENST00000506783 IFT57Q9NWB7 429 aa11.66□□□□□ -0.54
PHF3-208ENST00000506783 SETD1BQ9UPS6 1966 aaKnown RBP11.66□□□□□ -0.54
PHF3-208ENST00000506783 CHMP4CQ96CF2 233 aa11.66□□□□□ -0.54
PHF3-208ENST00000506783 LRRCC1Q9C099 1032 aa11.66□□□□□ -0.54
PHF3-208ENST00000506783 GLIPR1L2Q4G1C9 344 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 AK9Q5TCS8 1911 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 KCNQ3O43525 872 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 PPIP5K1Q6PFW1 1433 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 FLIIQ13045 1269 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 RABEP1Q15276 862 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 ALDH1L2Q3SY69 923 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 TMX3Q96JJ7 454 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 RBSNQ9H1K0 784 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 DIAPH3Q9NSV4 1193 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 RIMS2Q9UQ26 1411 aa11.65□□□□□ -0.54
PHF3-208ENST00000506783 CCDC83Q8IWF9 413 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 TFIP11Q9UBB9 837 aaKnown RBP11.64□□□□□ -0.55
PHF3-208ENST00000506783 ARHGEF5Q12774 1597 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 MSH6P52701 1360 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 NPHP1O15259 732 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 ZSCAN23Q3MJ62 389 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 LRRC2Q9BYS8 371 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 PI4KAP2A4QPH2 592 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 HSP90B1P14625 803 aaKnown RBP11.64□□□□□ -0.55
PHF3-208ENST00000506783 PDE1AP54750 535 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 SLC39A6Q13433 755 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 PI4KAP1Q8N8J0 262 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 USP25Q9UHP3 1055 aa11.64□□□□□ -0.55
PHF3-208ENST00000506783 GADD45BO75293 160 aaPredicted RBP11.63□□□□□ -0.55
PHF3-208ENST00000506783 MX1P20591 662 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 RAB11FIP4Q86YS3 637 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 USP26Q9BXU7 913 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 CLTCL1P53675 1640 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 RAB3GAP1Q15042 981 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 PPP1R42Q7Z4L9 355 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 DDX11Q96FC9 970 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 BOLA2Q9H3K6 86 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 ZNF592Q92610 1267 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 DDX17Q92841 729 aaKnown RBP11.63□□□□□ -0.55
PHF3-208ENST00000506783 EYA1Q99502 592 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 KIF2CQ99661 725 aa11.63□□□□□ -0.55
PHF3-208ENST00000506783 MLH3Q9UHC1 1453 aa11.62□□□□□ -0.55
PHF3-208ENST00000506783 NUCB2P80303 420 aa11.62□□□□□ -0.55
PHF3-208ENST00000506783 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 GOLGB1Q14789 3259 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 ZFYVE16Q7Z3T8 1539 aa11.62□□□□□ -0.55
PHF3-208ENST00000506783 PRPF40BQ6NWY9 871 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 DNAJC2Q99543 621 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 DCTPP1Q9H773 170 aa11.62□□□□□ -0.55
PHF3-208ENST00000506783 LGR6Q9HBX8 967 aa11.62□□□□□ -0.55
PHF3-208ENST00000506783 CASTP20810 708 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 SKOR2Q2VWA4 1001 aaPredicted RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 EDC3Q96F86 508 aaKnown RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 TTC12Q9H892 705 aaPredicted RBP11.62□□□□□ -0.55
PHF3-208ENST00000506783 IFIT2P09913 472 aaKnown RBP11.61□□□□□ -0.55
PHF3-208ENST00000506783 PRAMEF22A3QJZ6 481 aa11.61□□□□□ -0.55
PHF3-208ENST00000506783 IGSF3O75054 1194 aa11.61□□□□□ -0.55
PHF3-208ENST00000506783 NBPF7P0C2Y1 421 aaPredicted RBP11.61□□□□□ -0.55
PHF3-208ENST00000506783 GIMAP6Q6P9H5 292 aa11.61□□□□□ -0.55
PHF3-208ENST00000506783 CKAP2LQ8IYA6 745 aa11.61□□□□□ -0.55
PHF3-208ENST00000506783 NEUROD6Q96NK8 337 aa11.61□□□□□ -0.55
PHF3-208ENST00000506783 SMC3Q9UQE7 1217 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms