RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 ANKRD36BQ8N2N9 1353 aa13.98□□□□□ -0.17
NEDD9-210ENST00000505589 CD2APQ9Y5K6 639 aa13.98□□□□□ -0.17
NEDD9-210ENST00000505589 USP47Q96K76 1375 aa13.97□□□□□ -0.17
NEDD9-210ENST00000505589 LTV1Q96GA3 475 aaPredicted RBP13.97□□□□□ -0.17
NEDD9-210ENST00000505589 SIN3AQ96ST3 1273 aa13.96□□□□□ -0.17
NEDD9-210ENST00000505589 BTAF1O14981 1849 aa13.96□□□□□ -0.17
NEDD9-210ENST00000505589 PAPPAQ13219 1627 aa13.95□□□□□ -0.18
NEDD9-210ENST00000505589 RAPGEF4Q8WZA2 1011 aa13.95□□□□□ -0.18
NEDD9-210ENST00000505589 GPBP1L1Q9HC44 474 aaPredicted RBP13.95□□□□□ -0.18
NEDD9-210ENST00000505589 QSER1Q2KHR3 1735 aa13.93□□□□□ -0.18
NEDD9-210ENST00000505589 HOXC9P31274 260 aa13.93□□□□□ -0.18
NEDD9-210ENST00000505589 COL23A1Q86Y22 540 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-210ENST00000505589 NLGN2Q8NFZ4 835 aa13.93□□□□□ -0.18
NEDD9-210ENST00000505589 SMARCC1Q92922 1105 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-210ENST00000505589 MON2Q7Z3U7 1717 aa13.93□□□□□ -0.18
NEDD9-210ENST00000505589 USP54Q70EL1 1684 aa13.92□□□□□ -0.18
NEDD9-210ENST00000505589 TATP17735 454 aaPredicted RBP13.92□□□□□ -0.18
NEDD9-210ENST00000505589 GOLGB1Q14789 3259 aaKnown RBP13.92□□□□□ -0.18
NEDD9-210ENST00000505589 LTN1O94822 1766 aa13.91□□□□□ -0.18
NEDD9-210ENST00000505589 MAP3K19Q56UN5 1328 aa13.9□□□□□ -0.18
NEDD9-210ENST00000505589 YBX3P16989 372 aaKnown RBP eCLIP13.9□□□□□ -0.18
NEDD9-210ENST00000505589 KCNQ4P56696 695 aa13.9□□□□□ -0.18
NEDD9-210ENST00000505589 A0A1W2PP64 1363 aa13.9□□□□□ -0.18
NEDD9-210ENST00000505589 CD163L1Q9NR16 1453 aa13.9□□□□□ -0.18
NEDD9-210ENST00000505589 SMG6Q86US8 1419 aaKnown RBP13.9□□□□□ -0.19
NEDD9-210ENST00000505589 FAM208AQ9UK61 1670 aaKnown RBP13.89□□□□□ -0.19
NEDD9-210ENST00000505589 NSD3Q9BZ95 1437 aa13.89□□□□□ -0.19
NEDD9-210ENST00000505589 RTL1A6NKG5 1358 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 COL24A1Q17RW2 1714 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 HSPA6P17066 643 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 AK7Q96M32 723 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 PCDH11XQ9BZA7 1347 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 PCDH11YQ9BZA8 1340 aa13.88□□□□□ -0.19
NEDD9-210ENST00000505589 CDCA8Q53HL2 280 aa13.87□□□□□ -0.19
NEDD9-210ENST00000505589 MPRIPQ6WCQ1 1025 aa13.87□□□□□ -0.19
NEDD9-210ENST00000505589 NBPF6Q5VWK0 638 aa13.86□□□□□ -0.19
NEDD9-210ENST00000505589 NBPF4Q96M43 638 aa13.86□□□□□ -0.19
NEDD9-210ENST00000505589 KIF24Q5T7B8 1368 aa13.85□□□□□ -0.19
NEDD9-210ENST00000505589 ATP10DQ9P241 1426 aa13.85□□□□□ -0.19
NEDD9-210ENST00000505589 MSL1Q68DK7 614 aa13.85□□□□□ -0.19
NEDD9-210ENST00000505589 NSD2O96028 1365 aa13.84□□□□□ -0.19
NEDD9-210ENST00000505589 TONSLQ96HA7 1378 aa13.84□□□□□ -0.19
NEDD9-210ENST00000505589 LY75O60449 1722 aa13.84□□□□□ -0.19
NEDD9-210ENST00000505589 SSFA2P28290 1259 aa13.84□□□□□ -0.19
NEDD9-210ENST00000505589 PALLDQ8WX93 1383 aa13.83□□□□□ -0.19
NEDD9-210ENST00000505589 ST20-MTHFSA0A0A6YYL1 179 aa13.83□□□□□ -0.2
NEDD9-210ENST00000505589 FYB1O15117 783 aa13.83□□□□□ -0.2
NEDD9-210ENST00000505589 TMF1P82094 1093 aa13.83□□□□□ -0.2
NEDD9-210ENST00000505589 SPG7Q9UQ90 795 aa13.83□□□□□ -0.2
NEDD9-210ENST00000505589 TGFB2P61812 414 aa13.82□□□□□ -0.2
NEDD9-210ENST00000505589 RRS1Q15050 365 aaKnown RBP13.82□□□□□ -0.2
NEDD9-210ENST00000505589 INSRP06213 1382 aa13.82□□□□□ -0.2
NEDD9-210ENST00000505589 SHANK3Q9BYB0 1731 aa13.81□□□□□ -0.2
NEDD9-210ENST00000505589 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.81□□□□□ -0.2
NEDD9-210ENST00000505589 FBLN1P23142 703 aa13.81□□□□□ -0.2
NEDD9-210ENST00000505589 APLP1P51693 650 aa13.81□□□□□ -0.2
NEDD9-210ENST00000505589 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.81□□□□□ -0.2
NEDD9-210ENST00000505589 IGSF1Q8N6C5 1336 aa13.81□□□□□ -0.2
NEDD9-210ENST00000505589 NKX1-1Q15270 411 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-210ENST00000505589 ZNF526Q8TF50 670 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-210ENST00000505589 TESK2Q96S53 571 aa13.8□□□□□ -0.2
NEDD9-210ENST00000505589 GGNBP2Q9H3C7 697 aa13.8□□□□□ -0.2
NEDD9-210ENST00000505589 FLT4P35916 1363 aa13.8□□□□□ -0.2
NEDD9-210ENST00000505589 MEGF6O75095 1541 aa13.8□□□□□ -0.2
NEDD9-210ENST00000505589 CEP350Q5VT06 3117 aa13.79□□□□□ -0.2
NEDD9-210ENST00000505589 TOMM70O94826 608 aa13.79□□□□□ -0.2
NEDD9-210ENST00000505589 HSP90AB2PQ58FF8 381 aa13.79□□□□□ -0.2
NEDD9-210ENST00000505589 NLGN1Q8N2Q7 840 aa13.79□□□□□ -0.2
NEDD9-210ENST00000505589 USHBP1Q8N6Y0 703 aa13.79□□□□□ -0.2
NEDD9-210ENST00000505589 DOT1LQ8TEK3 1739 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 LOC102724428A0A0B4J2F2 783 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 CYP27B1O15528 508 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 PHF14O94880 888 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 SIK1P57059 783 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 PIGBQ92521 554 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 TMOD3Q9NYL9 352 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 ADCY9O60503 1353 aa13.78□□□□□ -0.2
NEDD9-210ENST00000505589 ATP6V1AP38606 617 aa13.77□□□□□ -0.21
NEDD9-210ENST00000505589 TRAPPC3LQ5T215 181 aa13.77□□□□□ -0.21
NEDD9-210ENST00000505589 IFNL2Q8IZJ0 200 aa13.77□□□□□ -0.21
NEDD9-210ENST00000505589 RTCBQ9Y3I0 505 aaKnown RBP13.76□□□□□ -0.21
NEDD9-210ENST00000505589 TUBGCP6Q96RT7 1819 aa13.76□□□□□ -0.21
NEDD9-210ENST00000505589 KIF3CO14782 793 aa13.74□□□□□ -0.21
NEDD9-210ENST00000505589 GNPATO15228 680 aa13.74□□□□□ -0.21
NEDD9-210ENST00000505589 HSP90AB1P08238 724 aaKnown RBP13.74□□□□□ -0.21
NEDD9-210ENST00000505589 C16orf71Q8IYS4 520 aaPredicted RBP13.74□□□□□ -0.21
NEDD9-210ENST00000505589 CCDC87Q9NVE4 849 aa13.74□□□□□ -0.21
NEDD9-210ENST00000505589 C5P01031 1676 aa13.74□□□□□ -0.21
NEDD9-210ENST00000505589 PPM1GO15355 546 aaPredicted RBP13.73□□□□□ -0.21
NEDD9-210ENST00000505589 RC3H1Q5TC82 1133 aaKnown RBP13.73□□□□□ -0.21
NEDD9-210ENST00000505589 BCS1LQ9Y276 419 aa13.73□□□□□ -0.21
NEDD9-210ENST00000505589 WASHC2AQ641Q2 1341 aa13.72□□□□□ -0.21
NEDD9-210ENST00000505589 ERVV-2B6SEH9 535 aa13.72□□□□□ -0.21
NEDD9-210ENST00000505589 MMP10P09238 476 aa13.72□□□□□ -0.21
NEDD9-210ENST00000505589 ARHGAP27Q6ZUM4 889 aa13.72□□□□□ -0.21
NEDD9-210ENST00000505589 PARP3Q9Y6F1 533 aa13.72□□□□□ -0.21
NEDD9-210ENST00000505589 PLEKHG2Q9H7P9 1386 aa13.71□□□□□ -0.21
NEDD9-210ENST00000505589 C4BP0C0L5 1744 aa13.71□□□□□ -0.21
NEDD9-210ENST00000505589 RFC4P35249 363 aa13.71□□□□□ -0.21
NEDD9-210ENST00000505589 LINC00116Q8NCU8 138 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms