RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 NFE2L2Q16236 605 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 PPP6R1Q9UPN7 881 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 PIBF1Q8WXW3 757 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 CCDC85AQ96PX6 553 aaPredicted RBP20.76■□□□□ 0.91
NPHP4-209ENST00000489180 FCHSD2O94868 740 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 CCDC57Q2TAC2 916 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 SYCP1Q15431 976 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 DHX37Q8IY37 1157 aaKnown RBP20.76■□□□□ 0.91
NPHP4-209ENST00000489180 GNL3LQ9NVN8 582 aaKnown RBP20.76■□□□□ 0.91
NPHP4-209ENST00000489180 MCM10Q7L590 875 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 ZSCAN30Q86W11 494 aa20.76■□□□□ 0.91
NPHP4-209ENST00000489180 ANKRD30BQ9BXX2 1392 aa20.75■□□□□ 0.91
NPHP4-209ENST00000489180 ERICH4A6NGS2 130 aa20.75■□□□□ 0.91
NPHP4-209ENST00000489180 MAP3K11Q16584 847 aa20.75■□□□□ 0.91
NPHP4-209ENST00000489180 CENPHQ9H3R5 247 aa20.75■□□□□ 0.91
NPHP4-209ENST00000489180 RARSP54136 660 aaKnown RBP20.74■□□□□ 0.91
NPHP4-209ENST00000489180 STIM1Q13586 685 aa20.74■□□□□ 0.91
NPHP4-209ENST00000489180 TMEM132AQ24JP5 1023 aa20.74■□□□□ 0.91
NPHP4-209ENST00000489180 PRPF40BQ6NWY9 871 aaKnown RBP20.74■□□□□ 0.91
NPHP4-209ENST00000489180 SSH1Q8WYL5 1049 aa20.74■□□□□ 0.91
NPHP4-209ENST00000489180 SSFA2P28290 1259 aa20.73■□□□□ 0.91
NPHP4-209ENST00000489180 PROSER2Q86WR7 435 aaPredicted RBP20.73■□□□□ 0.91
NPHP4-209ENST00000489180 MX1P20591 662 aa20.73■□□□□ 0.91
NPHP4-209ENST00000489180 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
NPHP4-209ENST00000489180 GOLGA6L10A6NI86 522 aa20.72■□□□□ 0.91
NPHP4-209ENST00000489180 ERLIN1O75477 346 aa20.72■□□□□ 0.91
NPHP4-209ENST00000489180 PLCD4Q9BRC7 762 aa20.72■□□□□ 0.91
NPHP4-209ENST00000489180 TDO2P48775 406 aa20.71■□□□□ 0.91
NPHP4-209ENST00000489180 DHX8Q14562 1220 aaKnown RBP20.71■□□□□ 0.91
NPHP4-209ENST00000489180 TOM1L2Q6ZVM7 507 aa20.71■□□□□ 0.91
NPHP4-209ENST00000489180 NOL7Q9UMY1 257 aaKnown RBP20.71■□□□□ 0.91
NPHP4-209ENST00000489180 PDCL2Q8N4E4 241 aa20.71■□□□□ 0.91
NPHP4-209ENST00000489180 MPHOSPH8Q99549 860 aa20.71■□□□□ 0.91
NPHP4-209ENST00000489180 TBC1D2Q9BYX2 928 aa20.71■□□□□ 0.91
NPHP4-209ENST00000489180 DUSP27Q5VZP5 1158 aa20.7■□□□□ 0.9
NPHP4-209ENST00000489180 ZSCAN25Q6NSZ9 544 aa20.7■□□□□ 0.9
NPHP4-209ENST00000489180 EFCAB5A4FU69 1503 aa20.7■□□□□ 0.9
NPHP4-209ENST00000489180 CDKL5O76039 1030 aa20.7■□□□□ 0.9
NPHP4-209ENST00000489180 CALRP27797 417 aaKnown RBP20.7■□□□□ 0.9
NPHP4-209ENST00000489180 RRP9O43818 475 aaKnown RBP20.7■□□□□ 0.9
NPHP4-209ENST00000489180 XPCQ01831 940 aaPredicted RBP20.7■□□□□ 0.9
NPHP4-209ENST00000489180 CFAP100Q494V2 611 aa20.7■□□□□ 0.9
NPHP4-209ENST00000489180 SSBP05455 408 aaKnown RBP eCLIP20.69■□□□□ 0.9
NPHP4-209ENST00000489180 KRT32Q14532 448 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 LARP6Q9BRS8 491 aaKnown RBP20.69■□□□□ 0.9
NPHP4-209ENST00000489180 PRDM10Q9NQV6 1147 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 SPG7Q9UQ90 795 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 ERLIN2O94905 339 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 CCDC102AQ96A19 550 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 TNPO1Q92973 898 aaKnown RBP20.69■□□□□ 0.9
NPHP4-209ENST00000489180 UBAC1Q9BSL1 405 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 CEP126Q9P2H0 1117 aa20.69■□□□□ 0.9
NPHP4-209ENST00000489180 NEFHP12036 1026 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 HSP90AB3PQ58FF7 597 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 SOGA3Q5TF21 947 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 SLC26A8Q96RN1 970 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 CTNNA3Q9UI47 895 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 EIF3JO75822 258 aaKnown RBP20.68■□□□□ 0.9
NPHP4-209ENST00000489180 LRRFIP2Q9Y608 721 aaKnown RBP20.68■□□□□ 0.9
NPHP4-209ENST00000489180 SMTNL1A8MU46 457 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 IDH1O75874 414 aaKnown RBP20.68■□□□□ 0.9
NPHP4-209ENST00000489180 KIAA0754O94854 1291 aa20.68■□□□□ 0.9
NPHP4-209ENST00000489180 PDCL3Q9H2J4 239 aa20.67■□□□□ 0.9
NPHP4-209ENST00000489180 NKTRP30414 1462 aaKnown RBP20.67■□□□□ 0.9
NPHP4-209ENST00000489180 SEPT11Q9NVA2 429 aaKnown RBP20.67■□□□□ 0.9
NPHP4-209ENST00000489180 TROQ12816 1431 aaPredicted RBP20.67■□□□□ 0.9
NPHP4-209ENST00000489180 GNAT3A8MTJ3 354 aa20.67■□□□□ 0.9
NPHP4-209ENST00000489180 SUPT6HQ7KZ85 1726 aaKnown RBP20.67■□□□□ 0.9
NPHP4-209ENST00000489180 F6X3S4 739 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 CBX1P83916 185 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 BOLA2Q9H3K6 86 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 RAI14Q9P0K7 980 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 NAIPQ13075 1403 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 HECW1Q76N89 1606 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 LUC7LQ9NQ29 371 aaKnown RBP20.66■□□□□ 0.9
NPHP4-209ENST00000489180 ATAD2Q6PL18 1390 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 TAX1BP1Q86VP1 789 aa20.66■□□□□ 0.9
NPHP4-209ENST00000489180 CCDC183Q5T5S1 534 aa20.65■□□□□ 0.9
NPHP4-209ENST00000489180 PRXQ9BXM0 1461 aa20.65■□□□□ 0.9
NPHP4-209ENST00000489180 EPB41L2O43491 1005 aaKnown RBP20.65■□□□□ 0.9
NPHP4-209ENST00000489180 GUCY1B3Q02153 619 aa20.65■□□□□ 0.9
NPHP4-209ENST00000489180 MAPK8IP2Q13387 824 aaPredicted RBP20.65■□□□□ 0.9
NPHP4-209ENST00000489180 KIF1BPQ96EK5 621 aa20.65■□□□□ 0.9
NPHP4-209ENST00000489180 IMMTQ16891 758 aaKnown RBP20.65■□□□□ 0.9
NPHP4-209ENST00000489180 UBXN4Q92575 508 aa20.65■□□□□ 0.9
NPHP4-209ENST00000489180 GDPD2Q9HCC8 539 aa20.64■□□□□ 0.9
NPHP4-209ENST00000489180 KIAA1328Q86T90 577 aa20.64■□□□□ 0.89
NPHP4-209ENST00000489180 EIF5P55010 431 aaKnown RBP20.64■□□□□ 0.89
NPHP4-209ENST00000489180 ARHGAP29Q52LW3 1261 aa20.64■□□□□ 0.89
NPHP4-209ENST00000489180 CKAP2LQ8IYA6 745 aa20.63■□□□□ 0.89
NPHP4-209ENST00000489180 CDK13Q14004 1512 aaKnown RBP20.63■□□□□ 0.89
NPHP4-209ENST00000489180 PTPN14Q15678 1187 aa20.63■□□□□ 0.89
NPHP4-209ENST00000489180 LRP2BPQ9P2M1 347 aa20.63■□□□□ 0.89
NPHP4-209ENST00000489180 USP25Q9UHP3 1055 aa20.63■□□□□ 0.89
NPHP4-209ENST00000489180 ENOX2Q16206 610 aaKnown RBP20.63■□□□□ 0.89
NPHP4-209ENST00000489180 ANKRD62A6NC57 917 aa20.63■□□□□ 0.89
NPHP4-209ENST00000489180 NUDT16Q96DE0 195 aaKnown RBP20.63■□□□□ 0.89
NPHP4-209ENST00000489180 AIDAQ96BJ3 306 aa20.62■□□□□ 0.89
NPHP4-209ENST00000489180 GLRX3O76003 335 aaKnown RBP20.62■□□□□ 0.89
NPHP4-209ENST00000489180 SLC52A1Q9NWF4 448 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms