RNA–Protein interactions for RNA: ENST00000487825.5

BRCA1-217, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-217ENST00000487825 KDF1Q8NAX2 398 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-217ENST00000487825 CEP126Q9P2H0 1117 aa9.55□□□□□ -0.88
BRCA1-217ENST00000487825 PCDHB11Q9Y5F2 797 aa9.55□□□□□ -0.88
BRCA1-217ENST00000487825 H3BM21 787 aa9.54□□□□□ -0.88
BRCA1-217ENST00000487825 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.54□□□□□ -0.88
BRCA1-217ENST00000487825 NPAS3Q8IXF0 933 aa9.54□□□□□ -0.88
BRCA1-217ENST00000487825 HMGXB3Q12766 1538 aa9.54□□□□□ -0.88
BRCA1-217ENST00000487825 SCTRP47872 440 aa9.53□□□□□ -0.88
BRCA1-217ENST00000487825 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
BRCA1-217ENST00000487825 LAMC3Q9Y6N6 1575 aa9.53□□□□□ -0.88
BRCA1-217ENST00000487825 CC2D2BQ6DHV5 1058 aa9.52□□□□□ -0.89
BRCA1-217ENST00000487825 CCDC125Q86Z20 511 aa9.52□□□□□ -0.89
BRCA1-217ENST00000487825 TRIM52Q96A61 297 aa9.52□□□□□ -0.89
BRCA1-217ENST00000487825 ERBB4Q15303 1308 aa9.52□□□□□ -0.89
BRCA1-217ENST00000487825 ATP5J2-PTCD1G3V325 749 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 PPFIA3O75145 1194 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 ERVK-9P63128 1117 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 PTSQ03393 145 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 IRF7Q92985 503 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 ESF1Q9H501 851 aaKnown RBP9.51□□□□□ -0.89
BRCA1-217ENST00000487825 COG6Q9Y2V7 657 aa9.51□□□□□ -0.89
BRCA1-217ENST00000487825 RNF217Q8TC41 542 aa9.5□□□□□ -0.89
BRCA1-217ENST00000487825 CCDC85AQ96PX6 553 aaPredicted RBP9.5□□□□□ -0.89
BRCA1-217ENST00000487825 CDCA7Q9BWT1 371 aaPredicted RBP9.5□□□□□ -0.89
BRCA1-217ENST00000487825 RIMBP3CA6NJZ7 1639 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 RIMBP3BA6NNM3 1639 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 RIMBP3Q9UFD9 1639 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 MEN1O00255 615 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 GMPRP36959 345 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 WASHC4Q2M389 1173 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 TSGA10IPQ3SY00 556 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 POM121Q96HA1 1249 aa9.49□□□□□ -0.89
BRCA1-217ENST00000487825 ATAD2BQ9ULI0 1458 aa9.48□□□□□ -0.89
BRCA1-217ENST00000487825 TMEM132AQ24JP5 1023 aa9.48□□□□□ -0.89
BRCA1-217ENST00000487825 SLFNL1Q499Z3 407 aa9.48□□□□□ -0.89
BRCA1-217ENST00000487825 FOXD4L5Q5VV16 416 aaPredicted RBP9.48□□□□□ -0.89
BRCA1-217ENST00000487825 A0A1W2PRU2 124 aa9.47□□□□□ -0.89
BRCA1-217ENST00000487825 WIPF1O43516 503 aa9.47□□□□□ -0.89
BRCA1-217ENST00000487825 OSBPL3Q9H4L5 887 aa9.47□□□□□ -0.89
BRCA1-217ENST00000487825 PRICKLE2Q7Z3G6 844 aa9.46□□□□□ -0.9
BRCA1-217ENST00000487825 CYP2U1Q7Z449 544 aa9.46□□□□□ -0.9
BRCA1-217ENST00000487825 RNF135Q8IUD6 432 aa9.46□□□□□ -0.9
BRCA1-217ENST00000487825 TRAK2O60296 914 aa9.45□□□□□ -0.9
BRCA1-217ENST00000487825 UBTFP17480 764 aaKnown RBP9.45□□□□□ -0.9
BRCA1-217ENST00000487825 SEMA3FQ13275 785 aa9.45□□□□□ -0.9
BRCA1-217ENST00000487825 PHTF2Q8N3S3 785 aa9.45□□□□□ -0.9
BRCA1-217ENST00000487825 CCDC155Q8N6L0 562 aa9.45□□□□□ -0.9
BRCA1-217ENST00000487825 DOLKQ9UPQ8 538 aa9.45□□□□□ -0.9
BRCA1-217ENST00000487825 RAD21O60216 631 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 MYCP01106 439 aaPredicted RBP9.44□□□□□ -0.9
BRCA1-217ENST00000487825 FLIIQ13045 1269 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 LYSMD3Q7Z3D4 306 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 NLRP3Q96P20 1036 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 ARHGEF10LQ9HCE6 1279 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 RAB6BQ9NRW1 208 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 WDR62O43379 1518 aa9.44□□□□□ -0.9
BRCA1-217ENST00000487825 RHOQP17081 205 aa9.43□□□□□ -0.9
BRCA1-217ENST00000487825 RNF144AP50876 292 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-217ENST00000487825 OXLD1Q5BKU9 147 aa9.43□□□□□ -0.9
BRCA1-217ENST00000487825 SLC35F4A4IF30 521 aa9.42□□□□□ -0.9
BRCA1-217ENST00000487825 VSIG8P0DPA2 414 aa9.42□□□□□ -0.9
BRCA1-217ENST00000487825 INSM1Q01101 510 aaPredicted RBP9.42□□□□□ -0.9
BRCA1-217ENST00000487825 CLN3Q13286 438 aa9.41□□□□□ -0.9
BRCA1-217ENST00000487825 SLC27A3Q5K4L6 730 aa9.41□□□□□ -0.9
BRCA1-217ENST00000487825 WWC1Q8IX03 1113 aa9.41□□□□□ -0.9
BRCA1-217ENST00000487825 PDS5BQ9NTI5 1447 aa9.4□□□□□ -0.9
BRCA1-217ENST00000487825 SENP3-EIF4A1A0A087X0R7 540 aa9.4□□□□□ -0.9
BRCA1-217ENST00000487825 SOX11P35716 441 aa9.4□□□□□ -0.9
BRCA1-217ENST00000487825 SMARCA4P51532 1647 aa9.4□□□□□ -0.9
BRCA1-217ENST00000487825 STAU1O95793 577 aaKnown RBP9.39□□□□□ -0.91
BRCA1-217ENST00000487825 GNRH1P01148 92 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 ITGA6P23229 1130 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 GPC1P35052 558 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 USP4Q13107 963 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 GPR161Q8N6U8 529 aaKnown RBP9.39□□□□□ -0.91
BRCA1-217ENST00000487825 CNKSR1Q969H4 720 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 MRC2Q9UBG0 1479 aa9.39□□□□□ -0.91
BRCA1-217ENST00000487825 CDC14CA4D256 554 aa9.38□□□□□ -0.91
BRCA1-217ENST00000487825 POU4F2Q12837 409 aa9.38□□□□□ -0.91
BRCA1-217ENST00000487825 VWA5B2Q8N398 1253 aa9.38□□□□□ -0.91
BRCA1-217ENST00000487825 PLPP7Q8NBV4 271 aa9.38□□□□□ -0.91
BRCA1-217ENST00000487825 CHIC2Q9UKJ5 165 aa9.38□□□□□ -0.91
BRCA1-217ENST00000487825 PIK3CDO00329 1044 aa9.37□□□□□ -0.91
BRCA1-217ENST00000487825 IL2RAP01589 272 aa9.37□□□□□ -0.91
BRCA1-217ENST00000487825 GRIP2Q9C0E4 1043 aa9.37□□□□□ -0.91
BRCA1-217ENST00000487825 ALG2Q9H553 416 aa9.37□□□□□ -0.91
BRCA1-217ENST00000487825 ARHGEF11O15085 1522 aa9.36□□□□□ -0.91
BRCA1-217ENST00000487825 BAZ1BQ9UIG0 1483 aaKnown RBP9.36□□□□□ -0.91
BRCA1-217ENST00000487825 POM121CA8CG34 1229 aa9.36□□□□□ -0.91
BRCA1-217ENST00000487825 CENPCQ03188 943 aa9.36□□□□□ -0.91
BRCA1-217ENST00000487825 CLUAP1Q96AJ1 413 aa9.36□□□□□ -0.91
BRCA1-217ENST00000487825 ESYT1Q9BSJ8 1104 aa9.36□□□□□ -0.91
BRCA1-217ENST00000487825 MAP7D1Q3KQU3 841 aa9.35□□□□□ -0.91
BRCA1-217ENST00000487825 SIRT1Q96EB6 747 aa9.35□□□□□ -0.91
BRCA1-217ENST00000487825 CUEDC1Q9NWM3 386 aaPredicted RBP9.35□□□□□ -0.91
BRCA1-217ENST00000487825 NBPF10Q6P3W6 841 aaKnown RBP9.34□□□□□ -0.91
BRCA1-217ENST00000487825 SV2AQ7L0J3 742 aa9.34□□□□□ -0.91
BRCA1-217ENST00000487825 NBPF15Q8N660 670 aa9.34□□□□□ -0.91
BRCA1-217ENST00000487825 ZSCAN1Q8NBB4 408 aa9.34□□□□□ -0.91
BRCA1-217ENST00000487825 NANOS1Q8WY41 292 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms