RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 EHBP1Q8NDI1 1231 aa10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 TRIM47Q96LD4 638 aa10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 GPATCH8Q9UKJ3 1502 aaKnown RBP10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 MROH2AA6NES4 1674 aa10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 SENP2Q9HC62 589 aa10.46□□□□□ -0.73
TMEM39A-209ENST00000486235 CLTCQ00610 1675 aaKnown RBP10.46□□□□□ -0.74
TMEM39A-209ENST00000486235 MYO3AQ8NEV4 1616 aa10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 ATP7AQ04656 1500 aa10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 A2MP01023 1474 aa10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 PTPRKQ15262 1439 aa10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 SPIRE2Q8WWL2 714 aa10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 CFDP1Q9UEE9 299 aaPredicted RBP10.45□□□□□ -0.74
TMEM39A-209ENST00000486235 CEP170BQ9Y4F5 1589 aaPredicted RBP10.44□□□□□ -0.74
TMEM39A-209ENST00000486235 PLA2R1Q13018 1463 aa10.44□□□□□ -0.74
TMEM39A-209ENST00000486235 FYCO1Q9BQS8 1478 aa10.44□□□□□ -0.74
TMEM39A-209ENST00000486235 MS4A1P11836 297 aa10.44□□□□□ -0.74
TMEM39A-209ENST00000486235 TCOF1Q13428 1488 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 TERTO14746 1132 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 SIAH2O43255 324 aa10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 TTLL12Q14166 644 aaPredicted RBP10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 LINC01559Q495D7 138 aa10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 WASF2Q9Y6W5 498 aa10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 PLXNC1O60486 1568 aa10.43□□□□□ -0.74
TMEM39A-209ENST00000486235 KIAA1107Q9UPP5 1409 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 CCNB3Q8WWL7 1395 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 ZNF142P52746 1687 aaPredicted RBP10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 MOXD2PA6NHM9 499 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 CCNYL3P0C7X3 344 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 BMP1P13497 986 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 SH3BP2P78314 561 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 PIP4K2BP78356 416 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 INO80Q9ULG1 1556 aaPredicted RBP10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 PLEKHH2Q8IVE3 1493 aa10.42□□□□□ -0.74
TMEM39A-209ENST00000486235 HSPA1LP34931 641 aa10.41□□□□□ -0.74
TMEM39A-209ENST00000486235 ZNF644Q9H582 1327 aaPredicted RBP10.4□□□□□ -0.74
TMEM39A-209ENST00000486235 PRR7Q8TB68 274 aa10.4□□□□□ -0.74
TMEM39A-209ENST00000486235 BAP1Q92560 729 aa10.4□□□□□ -0.74
TMEM39A-209ENST00000486235 KIFC2Q96AC6 838 aa10.4□□□□□ -0.74
TMEM39A-209ENST00000486235 A2ML1A8K2U0 1454 aa10.4□□□□□ -0.74
TMEM39A-209ENST00000486235 MTUS2Q5JR59 1369 aa10.39□□□□□ -0.75
TMEM39A-209ENST00000486235 CAPN5O15484 640 aaPredicted RBP10.39□□□□□ -0.75
TMEM39A-209ENST00000486235 FBXO31Q5XUX0 539 aaPredicted RBP10.39□□□□□ -0.75
TMEM39A-209ENST00000486235 UNC93B1Q9H1C4 597 aa10.38□□□□□ -0.75
TMEM39A-209ENST00000486235 DNMT1P26358 1616 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 WIPF1O43516 503 aa10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 PTPRNQ16849 979 aa10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 TRIM46Q7Z4K8 759 aa10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 EVA1BQ9NVM1 165 aa10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 TNRQ92752 1358 aa10.37□□□□□ -0.75
TMEM39A-209ENST00000486235 MED1Q15648 1581 aaPredicted RBP10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 KIF3BO15066 747 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 TOM1O60784 492 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 GIGYF2Q6Y7W6 1299 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 BARGINQ6ZT62 677 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 TLL2Q9Y6L7 1015 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 ADGBQ8N7X0 1667 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 MBD5Q9P267 1494 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 SHANK2Q9UPX8 1470 aa10.36□□□□□ -0.75
TMEM39A-209ENST00000486235 TIAM1Q13009 1591 aa10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 NEURL4Q96JN8 1562 aa10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 INSM1Q01101 510 aaPredicted RBP10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 KCNH2Q12809 1159 aa10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 BEGAINQ9BUH8 593 aa10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 DHX29Q7Z478 1369 aaKnown RBP10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.35□□□□□ -0.75
TMEM39A-209ENST00000486235 CPS1P31327 1500 aa10.34□□□□□ -0.75
TMEM39A-209ENST00000486235 ZMYND10O75800 440 aa10.34□□□□□ -0.75
TMEM39A-209ENST00000486235 MTMR2Q13614 643 aa10.34□□□□□ -0.75
TMEM39A-209ENST00000486235 ANKLE2Q86XL3 938 aa10.34□□□□□ -0.75
TMEM39A-209ENST00000486235 STK17AQ9UEE5 414 aa10.34□□□□□ -0.75
TMEM39A-209ENST00000486235 RTEL1-TNFRSF6BF6WH68 1400 aa10.33□□□□□ -0.76
TMEM39A-209ENST00000486235 VEGFBP49765 207 aa10.33□□□□□ -0.76
TMEM39A-209ENST00000486235 PZPP20742 1482 aa10.33□□□□□ -0.76
TMEM39A-209ENST00000486235 POLR1AO95602 1720 aaPredicted RBP10.33□□□□□ -0.76
TMEM39A-209ENST00000486235 WASHC2CQ9Y4E1 1318 aa10.33□□□□□ -0.76
TMEM39A-209ENST00000486235 CTHP32929 405 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 AMHR2Q16671 573 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 ZNF511Q8NB15 262 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 ZC3H15Q8WU90 426 aaKnown RBP10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 TBC1D2Q9BYX2 928 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 PCDHB15Q9Y5E8 787 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 EHBP1L1Q8N3D4 1523 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 KDM5DQ9BY66 1539 aa10.32□□□□□ -0.76
TMEM39A-209ENST00000486235 VWDEQ8N2E2 1590 aa10.31□□□□□ -0.76
TMEM39A-209ENST00000486235 THEMISQ8N1K5 641 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-209ENST00000486235 NPHP4O75161 1426 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-209ENST00000486235 MIA2Q96PC5 1412 aa10.31□□□□□ -0.76
TMEM39A-209ENST00000486235 CCDC141Q6ZP82 1450 aa10.3□□□□□ -0.76
TMEM39A-209ENST00000486235 SLC16A10Q8TF71 515 aa10.3□□□□□ -0.76
TMEM39A-209ENST00000486235 NXF1Q9UBU9 619 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-209ENST00000486235 CEP162Q5TB80 1403 aa10.3□□□□□ -0.76
TMEM39A-209ENST00000486235 FAM135AQ9P2D6 1515 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 ZFP42Q96MM3 310 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 UGGT1Q9NYU2 1555 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 CAMSAP2Q08AD1 1489 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 NLRP1Q9C000 1473 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 ALKQ9UM73 1620 aa10.29□□□□□ -0.76
TMEM39A-209ENST00000486235 SPDYE5A6NIY4 337 aa10.28□□□□□ -0.76
TMEM39A-209ENST00000486235 CFAP99D6REC4 459 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms