RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MRPL50Q8N5N7 158 aaKnown RBP16.36■□□□□ 0.21
USP40-214ENST00000483519 RIMS2Q9UQ26 1411 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 TXNDC2Q86VQ3 553 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 TERF2IPQ9NYB0 399 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 MYO5BQ9ULV0 1848 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 PNPLA6Q8IY17 1366 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 LRRC7Q96NW7 1537 aa16.36■□□□□ 0.21
USP40-214ENST00000483519 AK9Q5TCS8 1911 aa16.35■□□□□ 0.21
USP40-214ENST00000483519 ABCC4O15439 1325 aa16.35■□□□□ 0.21
USP40-214ENST00000483519 ATAD2Q6PL18 1390 aa16.35■□□□□ 0.21
USP40-214ENST00000483519 MCM5P33992 734 aa16.34■□□□□ 0.21
USP40-214ENST00000483519 SRPK2P78362 688 aaKnown RBP16.34■□□□□ 0.21
USP40-214ENST00000483519 CSPP1Q1MSJ5 1256 aa16.34■□□□□ 0.21
USP40-214ENST00000483519 SIRT2Q8IXJ6 389 aa16.34■□□□□ 0.21
USP40-214ENST00000483519 R3HCC1Q9Y3T6 440 aaKnown RBP16.34■□□□□ 0.21
USP40-214ENST00000483519 GSPT1P15170 499 aaKnown RBP16.34■□□□□ 0.21
USP40-214ENST00000483519 FAM135BQ49AJ0 1406 aa16.34■□□□□ 0.21
USP40-214ENST00000483519 FYB1O15117 783 aa16.33■□□□□ 0.21
USP40-214ENST00000483519 VAMP4O75379 141 aa16.33■□□□□ 0.21
USP40-214ENST00000483519 RBSNQ9H1K0 784 aa16.33■□□□□ 0.21
USP40-214ENST00000483519 ST18O60284 1047 aa16.33■□□□□ 0.2
USP40-214ENST00000483519 INTS3Q68E01 1043 aaKnown RBP16.33■□□□□ 0.2
USP40-214ENST00000483519 SAMD1Q6SPF0 538 aaPredicted RBP16.32■□□□□ 0.2
USP40-214ENST00000483519 TTC22Q5TAA0 569 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 MTERF4Q7Z6M4 381 aaKnown RBP16.32■□□□□ 0.2
USP40-214ENST00000483519 PLEKHM2Q8IWE5 1019 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 ZKSCAN5Q9Y2L8 839 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 ALKQ9UM73 1620 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 CASC1Q6TDU7 716 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 USP26Q9BXU7 913 aa16.32■□□□□ 0.2
USP40-214ENST00000483519 API5Q9BZZ5 524 aaKnown RBP16.32■□□□□ 0.2
USP40-214ENST00000483519 NCKAP5LQ9HCH0 1330 aa16.31■□□□□ 0.2
USP40-214ENST00000483519 PRKAR2BP31323 418 aa16.31■□□□□ 0.2
USP40-214ENST00000483519 PRIM1P49642 420 aaKnown RBP16.31■□□□□ 0.2
USP40-214ENST00000483519 GNAI1P63096 354 aa16.31■□□□□ 0.2
USP40-214ENST00000483519 RBM10P98175 930 aaKnown RBP16.31■□□□□ 0.2
USP40-214ENST00000483519 KIF24Q5T7B8 1368 aa16.31■□□□□ 0.2
USP40-214ENST00000483519 LTKP29376 864 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 SAFB2Q14151 953 aaKnown RBP eCLIP16.3■□□□□ 0.2
USP40-214ENST00000483519 IFT57Q9NWB7 429 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 FAM13BQ9NYF5 915 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 CCDC39Q9UFE4 941 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 UQCRHLA0A096LP55 91 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 PRPF40AO75400 957 aaKnown RBP16.3■□□□□ 0.2
USP40-214ENST00000483519 UQCRHP07919 91 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 NFE2L2Q16236 605 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.3■□□□□ 0.2
USP40-214ENST00000483519 KIF20BQ96Q89 1820 aa16.3■□□□□ 0.2
USP40-214ENST00000483519 LRSAM1Q6UWE0 723 aa16.29■□□□□ 0.2
USP40-214ENST00000483519 NPHP4O75161 1426 aaPredicted RBP16.29■□□□□ 0.2
USP40-214ENST00000483519 XPCQ01831 940 aaPredicted RBP16.29■□□□□ 0.2
USP40-214ENST00000483519 HDGFL2Q7Z4V5 671 aaPredicted RBP16.29■□□□□ 0.2
USP40-214ENST00000483519 SIRT1Q96EB6 747 aa16.29■□□□□ 0.2
USP40-214ENST00000483519 DCTPP1Q9H773 170 aa16.29■□□□□ 0.2
USP40-214ENST00000483519 PLEKHG1Q9ULL1 1385 aa16.29■□□□□ 0.2
USP40-214ENST00000483519 CD163L1Q9NR16 1453 aa16.28■□□□□ 0.2
USP40-214ENST00000483519 DYNC1I1O14576 645 aa16.28■□□□□ 0.2
USP40-214ENST00000483519 PKP1Q13835 747 aa16.28■□□□□ 0.2
USP40-214ENST00000483519 GPT2Q8TD30 523 aa16.28■□□□□ 0.2
USP40-214ENST00000483519 STRCQ7RTU9 1775 aa16.28■□□□□ 0.2
USP40-214ENST00000483519 TSPYL6Q8N831 410 aa16.27■□□□□ 0.2
USP40-214ENST00000483519 MBD3O95983 291 aa16.27■□□□□ 0.19
USP40-214ENST00000483519 TECPR2O15040 1411 aa16.26■□□□□ 0.19
USP40-214ENST00000483519 REC8O95072 547 aa16.26■□□□□ 0.19
USP40-214ENST00000483519 TWISTNBQ3B726 338 aaPredicted RBP16.26■□□□□ 0.19
USP40-214ENST00000483519 RBM27Q9P2N5 1060 aaKnown RBP16.26■□□□□ 0.19
USP40-214ENST00000483519 NUTM2DQ5VT03 806 aaPredicted RBP16.25■□□□□ 0.19
USP40-214ENST00000483519 NRXN3Q9Y4C0 1643 aa16.25■□□□□ 0.19
USP40-214ENST00000483519 SASS6Q6UVJ0 657 aa16.25■□□□□ 0.19
USP40-214ENST00000483519 ZGPATQ8N5A5 531 aaKnown RBP16.25■□□□□ 0.19
USP40-214ENST00000483519 MBIPQ9NS73 344 aa16.25■□□□□ 0.19
USP40-214ENST00000483519 YTHDC2Q9H6S0 1430 aaKnown RBP16.25■□□□□ 0.19
USP40-214ENST00000483519 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
USP40-214ENST00000483519 SYCE3A1L190 88 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 LMOD3Q0VAK6 560 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 THUMPD2Q9BTF0 503 aaKnown RBP16.24■□□□□ 0.19
USP40-214ENST00000483519 TMEM63CQ9P1W3 806 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 CPS1P31327 1500 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 ELL2O00472 640 aaPredicted RBP16.24■□□□□ 0.19
USP40-214ENST00000483519 STK26Q9P289 416 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 ZDHHC9Q9Y397 364 aa16.24■□□□□ 0.19
USP40-214ENST00000483519 SDSP20132 328 aa16.23■□□□□ 0.19
USP40-214ENST00000483519 ANKRD44Q8N8A2 993 aa16.23■□□□□ 0.19
USP40-214ENST00000483519 TBX22Q9Y458 520 aa16.23■□□□□ 0.19
USP40-214ENST00000483519 PHACTR3Q96KR7 559 aa16.22■□□□□ 0.19
USP40-214ENST00000483519 MINK1Q8N4C8 1332 aaPredicted RBP16.22■□□□□ 0.19
USP40-214ENST00000483519 RPAP2Q8IXW5 612 aaPredicted RBP16.22■□□□□ 0.19
USP40-214ENST00000483519 DIP2AQ14689 1571 aa16.22■□□□□ 0.19
USP40-214ENST00000483519 SYAP1Q96A49 352 aaPredicted RBP16.21■□□□□ 0.19
USP40-214ENST00000483519 ERC2O15083 957 aa16.21■□□□□ 0.19
USP40-214ENST00000483519 HMOX1P09601 288 aa16.21■□□□□ 0.19
USP40-214ENST00000483519 C16orf71Q8IYS4 520 aaPredicted RBP16.21■□□□□ 0.19
USP40-214ENST00000483519 POLKQ9UBT6 870 aa16.21■□□□□ 0.19
USP40-214ENST00000483519 ATP10DQ9P241 1426 aa16.21■□□□□ 0.18
USP40-214ENST00000483519 MCM2P49736 904 aa16.2■□□□□ 0.18
USP40-214ENST00000483519 PTMAP06454 111 aaKnown RBP16.2■□□□□ 0.18
USP40-214ENST00000483519 KIAA2012Q0VF49 1180 aa16.19■□□□□ 0.18
USP40-214ENST00000483519 SMAP1Q8IYB5 467 aaPredicted RBP16.19■□□□□ 0.18
USP40-214ENST00000483519 C8orf58Q8NAV2 365 aa16.19■□□□□ 0.18
USP40-214ENST00000483519 PRAM1Q96QH2 718 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms