RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 AAASQ9NRG9 546 aa9.45□□□□□ -0.9
UPF3A-207ENST00000481131 OGFOD1Q8N543 542 aa9.44□□□□□ -0.9
UPF3A-207ENST00000481131 KCTD15Q96SI1 283 aaPredicted RBP9.44□□□□□ -0.9
UPF3A-207ENST00000481131 DACH1Q9UI36 760 aa9.44□□□□□ -0.9
UPF3A-207ENST00000481131 CDV3Q9UKY7 258 aaKnown RBP9.44□□□□□ -0.9
UPF3A-207ENST00000481131 KIAA1024Q9UPX6 916 aa9.44□□□□□ -0.9
UPF3A-207ENST00000481131 MAP4K5Q9Y4K4 846 aa9.44□□□□□ -0.9
UPF3A-207ENST00000481131 DKK1O94907 266 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 AVPP01185 164 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 RNF20Q5VTR2 975 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 LARP1Q6PKG0 1096 aaKnown RBP9.43□□□□□ -0.9
UPF3A-207ENST00000481131 CRIPAKQ8N1N5 446 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 SLAIN2Q9P270 581 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 PCDHB11Q9Y5F2 797 aa9.43□□□□□ -0.9
UPF3A-207ENST00000481131 ZBTB7BO15156 539 aaPredicted RBP9.42□□□□□ -0.9
UPF3A-207ENST00000481131 BRD1O95696 1058 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 RAB15P59190 212 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 FAM69CQ0P6D2 419 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 INTS6LQ5JSJ4 861 aaKnown RBP9.42□□□□□ -0.9
UPF3A-207ENST00000481131 SEPT12Q8IYM1 358 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 EHBP1Q8NDI1 1231 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 SNIP1Q8TAD8 396 aaKnown RBP9.42□□□□□ -0.9
UPF3A-207ENST00000481131 NOD1Q9Y239 953 aa9.42□□□□□ -0.9
UPF3A-207ENST00000481131 TTC24A2A3L6 582 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-207ENST00000481131 SIAH2O43255 324 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 VASH1Q7L8A9 365 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-207ENST00000481131 TRIM50Q86XT4 487 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 ANKMY2Q8IV38 441 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 ZNF594Q96JF6 807 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-207ENST00000481131 CDK15Q96Q40 435 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 DNAAF2Q9NVR5 837 aaKnown RBP9.41□□□□□ -0.9
UPF3A-207ENST00000481131 PCDHGA11Q9Y5H2 935 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 TLL2Q9Y6L7 1015 aa9.41□□□□□ -0.9
UPF3A-207ENST00000481131 GTF2IP78347 998 aa9.4□□□□□ -0.9
UPF3A-207ENST00000481131 DPYDQ12882 1025 aa9.4□□□□□ -0.9
UPF3A-207ENST00000481131 ERVH48-1M5A8F1 160 aa9.39□□□□□ -0.91
UPF3A-207ENST00000481131 GRM5P41594 1212 aa9.39□□□□□ -0.91
UPF3A-207ENST00000481131 SCTRP47872 440 aa9.39□□□□□ -0.91
UPF3A-207ENST00000481131 FAM200AQ8TCP9 573 aa9.39□□□□□ -0.91
UPF3A-207ENST00000481131 HPS1Q92902 700 aa9.39□□□□□ -0.91
UPF3A-207ENST00000481131 ATP1A2P50993 1020 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 KCNA1Q09470 495 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 ARID5BQ14865 1188 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 PHLDB3Q6NSJ2 640 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 SIX5Q8N196 739 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 LARGE2Q8N3Y3 721 aa9.38□□□□□ -0.91
UPF3A-207ENST00000481131 FSHRP23945 695 aa9.37□□□□□ -0.91
UPF3A-207ENST00000481131 CCDC125Q86Z20 511 aa9.37□□□□□ -0.91
UPF3A-207ENST00000481131 MPNDQ8N594 471 aa9.37□□□□□ -0.91
UPF3A-207ENST00000481131 ALDH1A1P00352 501 aa9.36□□□□□ -0.91
UPF3A-207ENST00000481131 SMCPP49901 116 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-207ENST00000481131 USP4Q13107 963 aa9.36□□□□□ -0.91
UPF3A-207ENST00000481131 TMPRSS4Q9NRS4 437 aa9.36□□□□□ -0.91
UPF3A-207ENST00000481131 LCE2AQ5TA79 106 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-207ENST00000481131 CCDC102BQ68D86 513 aa9.35□□□□□ -0.91
UPF3A-207ENST00000481131 TPCN2Q8NHX9 752 aa9.35□□□□□ -0.91
UPF3A-207ENST00000481131 CLP1Q92989 425 aaKnown RBP9.35□□□□□ -0.91
UPF3A-207ENST00000481131 SFI1A8K8P3 1242 aa9.34□□□□□ -0.91
UPF3A-207ENST00000481131 ADH1CP00326 375 aa9.34□□□□□ -0.91
UPF3A-207ENST00000481131 ERVK-9P63128 1117 aa9.34□□□□□ -0.91
UPF3A-207ENST00000481131 GZF1Q9H116 711 aaPredicted RBP9.34□□□□□ -0.91
UPF3A-207ENST00000481131 NR3C2P08235 984 aa9.33□□□□□ -0.92
UPF3A-207ENST00000481131 SIRT1Q96EB6 747 aa9.33□□□□□ -0.92
UPF3A-207ENST00000481131 SSFA2P28290 1259 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 SEC13P55735 322 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 PSME1Q06323 249 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 SWI5Q1ZZU3 235 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 CTC1Q2NKJ3 1217 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 ZNF784Q8NCA9 323 aaPredicted RBP9.32□□□□□ -0.92
UPF3A-207ENST00000481131 OSBPL3Q9H4L5 887 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 CYLDQ9NQC7 956 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 IVNS1ABPQ9Y6Y0 642 aa9.32□□□□□ -0.92
UPF3A-207ENST00000481131 AXIN1O15169 862 aa9.31□□□□□ -0.92
UPF3A-207ENST00000481131 LILRA1O75019 489 aa9.31□□□□□ -0.92
UPF3A-207ENST00000481131 STAU1O95793 577 aaKnown RBP9.31□□□□□ -0.92
UPF3A-207ENST00000481131 MYCP01106 439 aaPredicted RBP9.31□□□□□ -0.92
UPF3A-207ENST00000481131 CC2D2BQ6DHV5 1058 aa9.31□□□□□ -0.92
UPF3A-207ENST00000481131 PATL2C9JE40 543 aaKnown RBP9.3□□□□□ -0.92
UPF3A-207ENST00000481131 PPP1R26Q5T8A7 1209 aaPredicted RBP9.3□□□□□ -0.92
UPF3A-207ENST00000481131 CCDC116Q8IYX3 515 aa9.3□□□□□ -0.92
UPF3A-207ENST00000481131 GMPR2Q9P2T1 348 aaKnown RBP9.3□□□□□ -0.92
UPF3A-207ENST00000481131 LGR5O75473 907 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 ATP2B4P23634 1241 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 SCNN1AP37088 669 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 SCNN1DP51172 638 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 DHX9Q08211 1270 aaKnown RBP9.29□□□□□ -0.92
UPF3A-207ENST00000481131 NR5A1Q13285 461 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 OCLNQ16625 522 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 B4GALNT3Q6L9W6 998 aa9.29□□□□□ -0.92
UPF3A-207ENST00000481131 GNEQ9Y223 722 aaKnown RBP9.29□□□□□ -0.92
UPF3A-207ENST00000481131 TMEM229AB2RXF0 380 aa9.28□□□□□ -0.92
UPF3A-207ENST00000481131 TXNDC2Q86VQ3 553 aa9.28□□□□□ -0.92
UPF3A-207ENST00000481131 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.28□□□□□ -0.92
UPF3A-207ENST00000481131 PRMT3O60678 531 aa9.27□□□□□ -0.93
UPF3A-207ENST00000481131 ADD1P35611 737 aaKnown RBP9.27□□□□□ -0.93
UPF3A-207ENST00000481131 TREML4Q6UXN2 200 aa9.27□□□□□ -0.93
UPF3A-207ENST00000481131 TSEN2Q8NCE0 465 aaKnown RBP9.27□□□□□ -0.93
UPF3A-207ENST00000481131 PRIMPOLQ96LW4 560 aa9.27□□□□□ -0.93
UPF3A-207ENST00000481131 ZNF358Q9NW07 568 aa9.27□□□□□ -0.93
UPF3A-207ENST00000481131 ATP13A2Q9NQ11 1180 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms