RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 EVA1BQ9NVM1 165 aa8.09□□□□□ -1.11
VPS41-211ENST00000466017 PDZRN3Q9UPQ7 1066 aa8.09□□□□□ -1.11
VPS41-211ENST00000466017 SCAPERQ9BY12 1400 aa8.09□□□□□ -1.11
VPS41-211ENST00000466017 TEX14Q8IWB6 1497 aa8.08□□□□□ -1.12
VPS41-211ENST00000466017 ZEB1P37275 1124 aaPredicted RBP8.08□□□□□ -1.12
VPS41-211ENST00000466017 RPIAP49247 311 aa8.08□□□□□ -1.12
VPS41-211ENST00000466017 TRIM32Q13049 653 aa8.08□□□□□ -1.12
VPS41-211ENST00000466017 CHIC2Q9UKJ5 165 aa8.08□□□□□ -1.12
VPS41-211ENST00000466017 C9orf84Q5VXU9 1444 aa8.08□□□□□ -1.12
VPS41-211ENST00000466017 ADGRL1O94910 1474 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 TRAPPC8Q9Y2L5 1435 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 SPDYE5A6NIY4 337 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 F12P00748 615 aaPredicted RBP8.07□□□□□ -1.12
VPS41-211ENST00000466017 CCNYL3P0C7X3 344 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 LRRN4Q8WUT4 740 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 RRP7BPQ9NSQ0 103 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 SYCP2Q9BX26 1530 aa8.07□□□□□ -1.12
VPS41-211ENST00000466017 MLH3Q9UHC1 1453 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 SPAG9O60271 1321 aaKnown RBP8.06□□□□□ -1.12
VPS41-211ENST00000466017 CROCC2H7BZ55 1655 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 KCNH2Q12809 1159 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 PTPRNQ16849 979 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 LINC01559Q495D7 138 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 DESI1Q6ICB0 168 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 AFAP1Q8N556 730 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 BAP1Q92560 729 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 DENND4BO75064 1496 aaPredicted RBP8.06□□□□□ -1.12
VPS41-211ENST00000466017 ZNF518AQ6AHZ1 1483 aa8.06□□□□□ -1.12
VPS41-211ENST00000466017 ANKRD50Q9ULJ7 1429 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 PPP2R2DQ66LE6 453 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 EPS8L1Q8TE68 723 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 UNC93B1Q9H1C4 597 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 DHX57Q6P158 1386 aaKnown RBP8.05□□□□□ -1.12
VPS41-211ENST00000466017 GCC2Q8IWJ2 1684 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 ADGBQ8N7X0 1667 aa8.05□□□□□ -1.12
VPS41-211ENST00000466017 KIF13AQ9H1H9 1805 aa8.04□□□□□ -1.12
VPS41-211ENST00000466017 ZBTB24O43167 697 aaPredicted RBP8.04□□□□□ -1.12
VPS41-211ENST00000466017 CD2BP2O95400 341 aaKnown RBP8.04□□□□□ -1.12
VPS41-211ENST00000466017 SH3BP2P78314 561 aa8.04□□□□□ -1.12
VPS41-211ENST00000466017 KIF15Q9NS87 1388 aa8.04□□□□□ -1.12
VPS41-211ENST00000466017 PLXNC1O60486 1568 aa8.04□□□□□ -1.12
VPS41-211ENST00000466017 KDM5CP41229 1560 aa8.04□□□□□ -1.12
VPS41-211ENST00000466017 POGZQ7Z3K3 1410 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 PPRC1Q5VV67 1664 aaKnown RBP8.03□□□□□ -1.12
VPS41-211ENST00000466017 MAGI2Q86UL8 1455 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 DHX29Q7Z478 1369 aaKnown RBP8.03□□□□□ -1.12
VPS41-211ENST00000466017 CTHP32929 405 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 RC3H1Q5TC82 1133 aaKnown RBP8.03□□□□□ -1.12
VPS41-211ENST00000466017 CCER1Q8TC90 406 aaPredicted RBP8.03□□□□□ -1.12
VPS41-211ENST00000466017 MRGPRX2Q96LB1 330 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 HMX1Q9NP08 348 aaPredicted RBP8.03□□□□□ -1.12
VPS41-211ENST00000466017 DUOX2Q9NRD8 1548 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 ERBINQ96RT1 1412 aa8.03□□□□□ -1.12
VPS41-211ENST00000466017 RFC5P40937 340 aa8.02□□□□□ -1.13
VPS41-211ENST00000466017 TOR4AQ9NXH8 423 aa8.02□□□□□ -1.13
VPS41-211ENST00000466017 TIMELESSQ9UNS1 1208 aa8.02□□□□□ -1.13
VPS41-211ENST00000466017 NRG2O14511 850 aaPredicted RBP8.01□□□□□ -1.13
VPS41-211ENST00000466017 PRR20EP86478 221 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 PRR20CP86479 221 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 PRR20DP86480 221 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 PRR20BP86481 221 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 PRR20AP86496 221 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 C4orf48Q5BLP8 95 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 Q6ZNB5 142 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 FOXJ1Q92949 421 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 MPHOSPH9Q99550 1183 aa8.01□□□□□ -1.13
VPS41-211ENST00000466017 ATP7AQ04656 1500 aa8□□□□□ -1.13
VPS41-211ENST00000466017 ZFYVE16Q7Z3T8 1539 aa8□□□□□ -1.13
VPS41-211ENST00000466017 J3QL48 77 aa8□□□□□ -1.13
VPS41-211ENST00000466017 SIAH2O43255 324 aa8□□□□□ -1.13
VPS41-211ENST00000466017 AP1G2O75843 785 aa8□□□□□ -1.13
VPS41-211ENST00000466017 GOPCQ9HD26 462 aa8□□□□□ -1.13
VPS41-211ENST00000466017 INO80Q9ULG1 1556 aaPredicted RBP8□□□□□ -1.13
VPS41-211ENST00000466017 KIDINS220Q9ULH0 1771 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 ZMYM4Q5VZL5 1548 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 KDM5DQ9BY66 1539 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 WNT7AO00755 349 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 RAPGEF3O95398 923 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 NR6A1Q15406 480 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 RICTORQ6R327 1708 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 TRIM52Q96A61 297 aa7.99□□□□□ -1.13
VPS41-211ENST00000466017 PCMTD1Q96MG8 357 aaPredicted RBP7.98□□□□□ -1.13
VPS41-211ENST00000466017 HECW2Q9P2P5 1572 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 KDM6BO15054 1643 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 SMPD1P17405 629 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 ZNF511Q8NB15 262 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 DACH1Q9UI36 760 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 A2MP01023 1474 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 COL17A1Q9UMD9 1497 aaPredicted RBP7.97□□□□□ -1.13
VPS41-211ENST00000466017 REREQ9P2R6 1566 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 NUP155O75694 1391 aa7.97□□□□□ -1.13
VPS41-211ENST00000466017 EIF2AK4Q9P2K8 1649 aaKnown RBP7.96□□□□□ -1.13
VPS41-211ENST00000466017 TSPOAP1O95153 1857 aa7.96□□□□□ -1.13
VPS41-211ENST00000466017 PZPP20742 1482 aa7.96□□□□□ -1.13
VPS41-211ENST00000466017 BCORL1Q5H9F3 1711 aa7.96□□□□□ -1.14
VPS41-211ENST00000466017 FAM187AA6NFU0 413 aa7.96□□□□□ -1.14
VPS41-211ENST00000466017 MYT1Q01538 1121 aa7.96□□□□□ -1.14
VPS41-211ENST00000466017 OCSTAMPQ9BR26 566 aa7.96□□□□□ -1.14
VPS41-211ENST00000466017 ATP10AO60312 1499 aa7.95□□□□□ -1.14
VPS41-211ENST00000466017 AGLP35573 1532 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms