RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	PIK3C2A	O00443	1686 aa		21.16	■□□□□ 0.98
TOM1-210	ENST00000449058	HSCB	Q8IWL3	235 aa		21.16	■□□□□ 0.98
TOM1-210	ENST00000449058	DCTPP1	Q9H773	170 aa		21.16	■□□□□ 0.98
TOM1-210	ENST00000449058	CHMP5	Q9NZZ3	219 aa		21.15	■□□□□ 0.98
TOM1-210	ENST00000449058	FLT4	P35916	1363 aa		21.15	■□□□□ 0.98
TOM1-210	ENST00000449058	KDR	P35968	1356 aa		21.15	■□□□□ 0.98
TOM1-210	ENST00000449058	XRN1	Q8IZH2	1706 aa	Known RBP	21.15	■□□□□ 0.98
TOM1-210	ENST00000449058	PTPRC	P08575	1304 aa		21.15	■□□□□ 0.98
TOM1-210	ENST00000449058	SPRYD3	Q8NCJ5	442 aa		21.14	■□□□□ 0.97
TOM1-210	ENST00000449058	TBC1D9	Q6ZT07	1266 aa		21.14	■□□□□ 0.97
TOM1-210	ENST00000449058	ANKRD44	Q8N8A2	993 aa		21.13	■□□□□ 0.97
TOM1-210	ENST00000449058	FER1L4	A9Z1Z3	1794 aa		21.12	■□□□□ 0.97
TOM1-210	ENST00000449058	KIF2C	Q99661	725 aa		21.12	■□□□□ 0.97
TOM1-210	ENST00000449058	BRPF3	Q9ULD4	1205 aa		21.12	■□□□□ 0.97
TOM1-210	ENST00000449058	MARF1	Q9Y4F3	1742 aa	Known RBP	21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	SOX12	O15370	315 aa		21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	DDIT3	P35638	169 aa		21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	MTHFSD	Q2M296	383 aa	Known RBP	21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	PLEKHM2	Q8IWE5	1019 aa		21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	RPAP2	Q8IXW5	612 aa	Predicted RBP	21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	IGSF1	Q8N6C5	1336 aa		21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	USP54	Q70EL1	1684 aa		21.11	■□□□□ 0.97
TOM1-210	ENST00000449058	MSH6	P52701	1360 aa		21.1	■□□□□ 0.97
TOM1-210	ENST00000449058	MCM4	P33991	863 aa		21.1	■□□□□ 0.97
TOM1-210	ENST00000449058	RTL1	A6NKG5	1358 aa		21.1	■□□□□ 0.97
TOM1-210	ENST00000449058	LRRC37A3	O60309	1634 aa		21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	CDC45	O75419	566 aa		21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	NGDN	Q8NEJ9	315 aa	Known RBP	21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	ANKAR	Q7Z5J8	1434 aa		21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	FOXO3	O43524	673 aa		21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	GSPT1	P15170	499 aa	Known RBP	21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	CEP85	Q6P2H3	762 aa		21.09	■□□□□ 0.97
TOM1-210	ENST00000449058	EYA1	Q99502	592 aa		21.08	■□□□□ 0.96
TOM1-210	ENST00000449058	TRH	P20396	242 aa	Predicted RBP	21.07	■□□□□ 0.96
TOM1-210	ENST00000449058	THEMIS	Q8N1K5	641 aa	Predicted RBP	21.07	■□□□□ 0.96
TOM1-210	ENST00000449058	SLC4A2	P04920	1241 aa		21.07	■□□□□ 0.96
TOM1-210	ENST00000449058	RTF1	Q92541	710 aa	Known RBP	21.07	■□□□□ 0.96
TOM1-210	ENST00000449058	AMPH	P49418	695 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	TTC22	Q5TAA0	569 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	GAS2L2	Q8NHY3	880 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	MIS18A	Q9NYP9	233 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	MEIS3	Q99687	375 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	TSPYL4	Q9UJ04	414 aa		21.05	■□□□□ 0.96
TOM1-210	ENST00000449058	NWD1	Q149M9	1564 aa		21.04	■□□□□ 0.96
TOM1-210	ENST00000449058	HTATSF1	O43719	755 aa	Known RBP	21.04	■□□□□ 0.96
TOM1-210	ENST00000449058	EIF5B	O60841	1220 aa	Known RBP	21.04	■□□□□ 0.96
TOM1-210	ENST00000449058	FAM208A	Q9UK61	1670 aa	Known RBP	21.03	■□□□□ 0.96
TOM1-210	ENST00000449058	DNAJC5	Q9H3Z4	198 aa		21.03	■□□□□ 0.96
TOM1-210	ENST00000449058	C16orf71	Q8IYS4	520 aa	Predicted RBP	21.02	■□□□□ 0.96
TOM1-210	ENST00000449058	CIZ1	Q9ULV3	898 aa	Predicted RBP	21.02	■□□□□ 0.96
TOM1-210	ENST00000449058	G2E3	Q7L622	706 aa		21.02	■□□□□ 0.96
TOM1-210	ENST00000449058	HSP90AB1	P08238	724 aa	Known RBP	21.01	■□□□□ 0.95
TOM1-210	ENST00000449058	NLRP6	P59044	892 aa		21.01	■□□□□ 0.95
TOM1-210	ENST00000449058	CD2BP2	O95400	341 aa	Known RBP	21	■□□□□ 0.95
TOM1-210	ENST00000449058	CCT4	P50991	539 aa	Known RBP	21	■□□□□ 0.95
TOM1-210	ENST00000449058	CACNA1F	O60840	1977 aa		21	■□□□□ 0.95
TOM1-210	ENST00000449058	HOXC9	P31274	260 aa		21	■□□□□ 0.95
TOM1-210	ENST00000449058	OTUD7A	Q8TE49	926 aa	Predicted RBP	21	■□□□□ 0.95
TOM1-210	ENST00000449058	KCNA6	P17658	529 aa		20.99	■□□□□ 0.95
TOM1-210	ENST00000449058	N4BP2	Q86UW6	1770 aa	Predicted RBP	20.99	■□□□□ 0.95
TOM1-210	ENST00000449058		K7ELQ4	463 aa	Predicted RBP	20.99	■□□□□ 0.95
TOM1-210	ENST00000449058	L1TD1	Q5T7N2	865 aa	Known RBP	20.97	■□□□□ 0.95
TOM1-210	ENST00000449058	PLPPR3	Q6T4P5	718 aa		20.97	■□□□□ 0.95
TOM1-210	ENST00000449058	DDX11L8	A8MPP1	907 aa		20.97	■□□□□ 0.95
TOM1-210	ENST00000449058	GNAT3	A8MTJ3	354 aa		20.97	■□□□□ 0.95
TOM1-210	ENST00000449058	HMMR	O75330	724 aa		20.97	■□□□□ 0.95
TOM1-210	ENST00000449058	RBM42	Q9BTD8	480 aa	Known RBP	20.97	■□□□□ 0.95
TOM1-210	ENST00000449058		F6X3S4	739 aa		20.96	■□□□□ 0.95
TOM1-210	ENST00000449058	SMARCA5	O60264	1052 aa	Predicted RBP	20.96	■□□□□ 0.95
TOM1-210	ENST00000449058	TRAK2	O60296	914 aa		20.96	■□□□□ 0.95
TOM1-210	ENST00000449058	RTN4	Q9NQC3	1192 aa	Known RBP	20.96	■□□□□ 0.95
TOM1-210	ENST00000449058	SDS	P20132	328 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	RAB3GAP1	Q15042	981 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	SLC4A10	Q6U841	1118 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	STK31	Q9BXU1	1019 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	SOS1	Q07889	1333 aa	Predicted RBP	20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	USP26	Q9BXU7	913 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	MAP3K5	Q99683	1374 aa		20.95	■□□□□ 0.94
TOM1-210	ENST00000449058	FSD2	A1L4K1	749 aa		20.94	■□□□□ 0.94
TOM1-210	ENST00000449058	TNPO1	Q92973	898 aa	Known RBP	20.94	■□□□□ 0.94
TOM1-210	ENST00000449058	LTN1	O94822	1766 aa		20.94	■□□□□ 0.94
TOM1-210	ENST00000449058	CCDC30	Q5VVM6	783 aa		20.94	■□□□□ 0.94
TOM1-210	ENST00000449058	BABAM1	Q9NWV8	329 aa		20.94	■□□□□ 0.94
TOM1-210	ENST00000449058	CHD2	O14647	1828 aa	Known RBP	20.93	■□□□□ 0.94
TOM1-210	ENST00000449058	RABEP1	Q15276	862 aa		20.93	■□□□□ 0.94
TOM1-210	ENST00000449058	OSBPL3	Q9H4L5	887 aa		20.93	■□□□□ 0.94
TOM1-210	ENST00000449058	NUTM2G	Q5VZR2	741 aa		20.93	■□□□□ 0.94
TOM1-210	ENST00000449058	IL17RE	Q8NFR9	667 aa		20.93	■□□□□ 0.94
TOM1-210	ENST00000449058	TUBGCP6	Q96RT7	1819 aa		20.92	■□□□□ 0.94
TOM1-210	ENST00000449058	GNAI2	P04899	355 aa		20.92	■□□□□ 0.94
TOM1-210	ENST00000449058	FLII	Q13045	1269 aa		20.92	■□□□□ 0.94
TOM1-210	ENST00000449058	ABTB2	Q8N961	1025 aa		20.92	■□□□□ 0.94
TOM1-210	ENST00000449058	APBB1	O00213	710 aa		20.92	■□□□□ 0.94
TOM1-210	ENST00000449058	CASC1	Q6TDU7	716 aa		20.9	■□□□□ 0.94
TOM1-210	ENST00000449058	PXDNL	A1KZ92	1463 aa		20.9	■□□□□ 0.94
TOM1-210	ENST00000449058	HSP90AA1	P07900	732 aa	Known RBP	20.9	■□□□□ 0.94
TOM1-210	ENST00000449058	TAF7	Q15545	349 aa	Predicted RBP	20.89	■□□□□ 0.94
TOM1-210	ENST00000449058	GBP4	Q96PP9	640 aa		20.89	■□□□□ 0.94
TOM1-210	ENST00000449058	GOLGA6L3	A6NEY3	463 aa		20.89	■□□□□ 0.93

Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms