RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, human

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-216	ENST00000437340	TWISTNB	Q3B726	338 aa	Predicted RBP	32.79	■■■□□ 2.84
CPNE1-216	ENST00000437340	CHL1	O00533	1208 aa		32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	HAP1	P54257	671 aa	Predicted RBP	32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	MRPL50	Q8N5N7	158 aa	Known RBP	32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	TSPYL6	Q8N831	410 aa		32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	PCDHB15	Q9Y5E8	787 aa		32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	LMOD2	Q6P5Q4	547 aa		32.78	■■■□□ 2.84
CPNE1-216	ENST00000437340	IP6K1	Q92551	441 aa		32.77	■■■□□ 2.84
CPNE1-216	ENST00000437340	TNS3	Q68CZ2	1445 aa		32.76	■■■□□ 2.84
CPNE1-216	ENST00000437340	MTHFSD	Q2M296	383 aa	Known RBP	32.76	■■■□□ 2.84
CPNE1-216	ENST00000437340	SKAP1	Q86WV1	359 aa		32.76	■■■□□ 2.84
CPNE1-216	ENST00000437340	HTATSF1	O43719	755 aa	Known RBP	32.75	■■■□□ 2.83
CPNE1-216	ENST00000437340	RWDD1	Q9H446	243 aa	Predicted RBP	32.75	■■■□□ 2.83
CPNE1-216	ENST00000437340	CRB1	P82279	1406 aa		32.75	■■■□□ 2.83
CPNE1-216	ENST00000437340	C8orf58	Q8NAV2	365 aa		32.75	■■■□□ 2.83
CPNE1-216	ENST00000437340	KIAA0232	Q92628	1395 aa		32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	MED1	Q15648	1581 aa	Predicted RBP	32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	ROBO1	Q9Y6N7	1651 aa		32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	MCM10	Q7L590	875 aa		32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	ITPRIP	Q8IWB1	547 aa		32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	USP19	O94966	1318 aa		32.74	■■■□□ 2.83
CPNE1-216	ENST00000437340	RTF1	Q92541	710 aa	Known RBP	32.73	■■■□□ 2.83
CPNE1-216	ENST00000437340	CRYBG1	Q9Y4K1	1723 aa		32.73	■■■□□ 2.83
CPNE1-216	ENST00000437340	TMEM57	Q8N5G2	664 aa		32.72	■■■□□ 2.83
CPNE1-216	ENST00000437340	SPATA31A3	Q5VYP0	1347 aa		32.7	■■■□□ 2.83
CPNE1-216	ENST00000437340	SOS2	Q07890	1332 aa	Predicted RBP	32.69	■■■□□ 2.82
CPNE1-216	ENST00000437340	PLEKHG5	O94827	1062 aa		32.69	■■■□□ 2.82
CPNE1-216	ENST00000437340	ELL2	O00472	640 aa	Predicted RBP	32.68	■■■□□ 2.82
CPNE1-216	ENST00000437340	ANP32A	P39687	249 aa	Known RBP	32.68	■■■□□ 2.82
CPNE1-216	ENST00000437340	CHMP4B	Q9H444	224 aa	Known RBP	32.68	■■■□□ 2.82
CPNE1-216	ENST00000437340	ZBTB40	Q9NUA8	1239 aa		32.66	■■■□□ 2.82
CPNE1-216	ENST00000437340	GC	P02774	474 aa		32.65	■■■□□ 2.82
CPNE1-216	ENST00000437340	MSH5	O43196	834 aa		32.65	■■■□□ 2.82
CPNE1-216	ENST00000437340	RGS3	P49796	1198 aa		32.65	■■■□□ 2.82
CPNE1-216	ENST00000437340	HDAC1	Q13547	482 aa	Predicted RBP	32.65	■■■□□ 2.82
CPNE1-216	ENST00000437340	FAM161A	Q3B820	660 aa		32.64	■■■□□ 2.82
CPNE1-216	ENST00000437340	LTV1	Q96GA3	475 aa	Predicted RBP	32.64	■■■□□ 2.82
CPNE1-216	ENST00000437340	API5	Q9BZZ5	524 aa	Known RBP	32.64	■■■□□ 2.82
CPNE1-216	ENST00000437340	GNAT3	A8MTJ3	354 aa		32.63	■■■□□ 2.81
CPNE1-216	ENST00000437340	ABCC4	O15439	1325 aa		32.62	■■■□□ 2.81
CPNE1-216	ENST00000437340	ARHGEF25	Q86VW2	580 aa		32.62	■■■□□ 2.81
CPNE1-216	ENST00000437340	LRRC37A3	O60309	1634 aa		32.62	■■■□□ 2.81
CPNE1-216	ENST00000437340	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.6	■■■□□ 2.81
CPNE1-216	ENST00000437340	ABCA3	Q99758	1704 aa		32.6	■■■□□ 2.81
CPNE1-216	ENST00000437340	MAP3K5	Q99683	1374 aa		32.59	■■■□□ 2.81
CPNE1-216	ENST00000437340	BABAM1	Q9NWV8	329 aa		32.58	■■■□□ 2.81
CPNE1-216	ENST00000437340	TSPYL4	Q9UJ04	414 aa		32.58	■■■□□ 2.81
CPNE1-216	ENST00000437340	ZBTB7C	A1YPR0	619 aa		32.57	■■■□□ 2.8
CPNE1-216	ENST00000437340	CABLES1	Q8TDN4	633 aa		32.57	■■■□□ 2.8
CPNE1-216	ENST00000437340	RGPD5	Q99666	1765 aa		32.57	■■■□□ 2.8
CPNE1-216	ENST00000437340	C8orf34	Q49A92	452 aa		32.56	■■■□□ 2.8
CPNE1-216	ENST00000437340	NBPF6	Q5VWK0	638 aa		32.55	■■■□□ 2.8
CPNE1-216	ENST00000437340	NBPF4	Q96M43	638 aa		32.55	■■■□□ 2.8
CPNE1-216	ENST00000437340	ZBTB7B	O15156	539 aa	Predicted RBP	32.55	■■■□□ 2.8
CPNE1-216	ENST00000437340	PDZRN3	Q9UPQ7	1066 aa		32.55	■■■□□ 2.8
CPNE1-216	ENST00000437340	IPO9	Q96P70	1041 aa	Known RBP	32.54	■■■□□ 2.8
CPNE1-216	ENST00000437340	NCAPD2	Q15021	1401 aa		32.53	■■■□□ 2.8
CPNE1-216	ENST00000437340	KRT24	Q2M2I5	525 aa		32.53	■■■□□ 2.8
CPNE1-216	ENST00000437340	RGPD2	P0DJD1	1756 aa		32.52	■■■□□ 2.8
CPNE1-216	ENST00000437340	USHBP1	Q8N6Y0	703 aa		32.52	■■■□□ 2.8
CPNE1-216	ENST00000437340	COL18A1	P39060	1754 aa		32.51	■■■□□ 2.8
CPNE1-216	ENST00000437340	PTPRC	P08575	1304 aa		32.51	■■■□□ 2.79
CPNE1-216	ENST00000437340	SOS1	Q07889	1333 aa	Predicted RBP	32.51	■■■□□ 2.79
CPNE1-216	ENST00000437340	ZC3H6	P61129	1189 aa	Known RBP	32.5	■■■□□ 2.79
CPNE1-216	ENST00000437340	SMC5	Q8IY18	1101 aa		32.5	■■■□□ 2.79
CPNE1-216	ENST00000437340	PHLPP1	O60346	1717 aa		32.5	■■■□□ 2.79
CPNE1-216	ENST00000437340	IL17RE	Q8NFR9	667 aa		32.49	■■■□□ 2.79
CPNE1-216	ENST00000437340	MIS18A	Q9NYP9	233 aa		32.49	■■■□□ 2.79
CPNE1-216	ENST00000437340	TOM1	O60784	492 aa		32.48	■■■□□ 2.79
CPNE1-216	ENST00000437340	TAF7	Q15545	349 aa	Predicted RBP	32.47	■■■□□ 2.79
CPNE1-216	ENST00000437340	INTS3	Q68E01	1043 aa	Known RBP	32.46	■■■□□ 2.79
CPNE1-216	ENST00000437340	COL16A1	Q07092	1604 aa	Predicted RBP	32.46	■■■□□ 2.79
CPNE1-216	ENST00000437340	CEMIP	Q8WUJ3	1361 aa		32.45	■■■□□ 2.79
CPNE1-216	ENST00000437340	RGS12	O14924	1447 aa		32.44	■■■□□ 2.78
CPNE1-216	ENST00000437340	CAMTA1	Q9Y6Y1	1673 aa		32.44	■■■□□ 2.78
CPNE1-216	ENST00000437340	ANKRD24	Q8TF21	1146 aa		32.44	■■■□□ 2.78
CPNE1-216	ENST00000437340	PIP4K2B	P78356	416 aa		32.43	■■■□□ 2.78
CPNE1-216	ENST00000437340	AMOT	Q4VCS5	1084 aa		32.43	■■■□□ 2.78
CPNE1-216	ENST00000437340	NPM2	Q86SE8	214 aa	Known RBP	32.43	■■■□□ 2.78
CPNE1-216	ENST00000437340	ABCC6	O95255	1503 aa		32.43	■■■□□ 2.78
CPNE1-216	ENST00000437340	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.42	■■■□□ 2.78
CPNE1-216	ENST00000437340	LRRC59	Q96AG4	307 aa	Known RBP	32.42	■■■□□ 2.78
CPNE1-216	ENST00000437340	AXIN2	Q9Y2T1	843 aa		32.42	■■■□□ 2.78
CPNE1-216	ENST00000437340	CPD	O75976	1380 aa		32.42	■■■□□ 2.78
CPNE1-216	ENST00000437340	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.42	■■■□□ 2.78
CPNE1-216	ENST00000437340	UBAP1L	F5GYI3	381 aa		32.41	■■■□□ 2.78
CPNE1-216	ENST00000437340	ERICH6	Q7L0X2	663 aa		32.41	■■■□□ 2.78
CPNE1-216	ENST00000437340	ANP32E	Q9BTT0	268 aa		32.41	■■■□□ 2.78
CPNE1-216	ENST00000437340	NOP58	Q9Y2X3	529 aa	Known RBP	32.41	■■■□□ 2.78
CPNE1-216	ENST00000437340	SLC4A2	P04920	1241 aa		32.4	■■■□□ 2.78
CPNE1-216	ENST00000437340	AKAP4	Q5JQC9	854 aa		32.4	■■■□□ 2.78
CPNE1-216	ENST00000437340	VIRMA	Q69YN4	1812 aa	Known RBP	32.39	■■■□□ 2.78
CPNE1-216	ENST00000437340	LMO7	Q8WWI1	1683 aa		32.37	■■■□□ 2.77
CPNE1-216	ENST00000437340	CHRNA2	Q15822	529 aa		32.37	■■■□□ 2.77
CPNE1-216	ENST00000437340	CERK	Q8TCT0	537 aa		32.37	■■■□□ 2.77
CPNE1-216	ENST00000437340	GCC1	Q96CN9	775 aa		32.37	■■■□□ 2.77
CPNE1-216	ENST00000437340	CCDC30	Q5VVM6	783 aa		32.36	■■■□□ 2.77
CPNE1-216	ENST00000437340	STK31	Q9BXU1	1019 aa		32.36	■■■□□ 2.77
CPNE1-216	ENST00000437340	ERBB3	P21860	1342 aa		32.35	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms