RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 SLFN14P0C7P3 912 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 MORC2Q9Y6X9 1032 aaPredicted RBP6.28□□□□□ -1.4
RIF1-203ENST00000428287 SIGLEC1Q9BZZ2 1709 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 BBXQ8WY36 941 aaPredicted RBP6.28□□□□□ -1.4
RIF1-203ENST00000428287 ABCC4O15439 1325 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 CDK12Q9NYV4 1490 aaPredicted RBP6.27□□□□□ -1.4
RIF1-203ENST00000428287 ANAPC15P60006 121 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 KIAA2012Q0VF49 1180 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 PLEKHM2Q8IWE5 1019 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 CTNNA3Q9UI47 895 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.27□□□□□ -1.41
RIF1-203ENST00000428287 PLCH2O75038 1416 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 CANXP27824 592 aaKnown RBP6.27□□□□□ -1.41
RIF1-203ENST00000428287 SPRYD3Q8NCJ5 442 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 DDX60Q8IY21 1712 aaKnown RBP6.27□□□□□ -1.41
RIF1-203ENST00000428287 ARHGAP5Q13017 1502 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 CHD1O14646 1710 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 PHF14O94880 888 aa6.27□□□□□ -1.41
RIF1-203ENST00000428287 NEXMIFQ5QGS0 1516 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 RGPD1P0DJD0 1748 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 GSPT1P15170 499 aaKnown RBP6.26□□□□□ -1.41
RIF1-203ENST00000428287 SMC4Q9NTJ3 1288 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 CROCCQ5TZA2 2017 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 ZNF777Q9ULD5 760 aaPredicted RBP6.26□□□□□ -1.41
RIF1-203ENST00000428287 NINQ8N4C6 2090 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 NALCNQ8IZF0 1738 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 SYCE3A1L190 88 aa6.26□□□□□ -1.41
RIF1-203ENST00000428287 SYAP1Q96A49 352 aaPredicted RBP6.25□□□□□ -1.41
RIF1-203ENST00000428287 CAMSAP1Q5T5Y3 1602 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 ST18O60284 1047 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 REC8O95072 547 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 AKAP11Q9UKA4 1901 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 TULP4Q9NRJ4 1543 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 FAM135BQ49AJ0 1406 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 SSH2Q76I76 1423 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 RAD50Q92878 1312 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 PCNTO95613 3336 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 TERF2Q15554 542 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 MCTP1Q6DN14 999 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 ABCC3O15438 1527 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 KIAA0232Q92628 1395 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 VAMP4O75379 141 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 ATP2B3Q16720 1220 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 SLFNL1Q499Z3 407 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 A0A0U1RQG5 324 aaPredicted RBP6.25□□□□□ -1.41
RIF1-203ENST00000428287 SLC12A5Q9H2X9 1139 aa6.25□□□□□ -1.41
RIF1-203ENST00000428287 NSFL1CQ9UNZ2 370 aaKnown RBP6.25□□□□□ -1.41
RIF1-203ENST00000428287 FAM208AQ9UK61 1670 aaKnown RBP6.25□□□□□ -1.41
RIF1-203ENST00000428287 CDC45O75419 566 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 TTC12Q9H892 705 aaPredicted RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 NCBP1Q09161 790 aaKnown RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 PDIA4P13667 645 aaKnown RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 ZGPATQ8N5A5 531 aaKnown RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 OGFRQ9NZT2 677 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 CHRM1P11229 460 aaPredicted RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 SALL3Q9BXA9 1300 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 ZFYVE9O95405 1425 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 CD163L1Q9NR16 1453 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 ZNF853P0CG23 659 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 EXOSC9Q06265 439 aaKnown RBP6.24□□□□□ -1.41
RIF1-203ENST00000428287 AATKQ6ZMQ8 1374 aa6.24□□□□□ -1.41
RIF1-203ENST00000428287 RGS12O14924 1447 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 GON4LQ3T8J9 2241 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 IPO4Q8TEX9 1081 aaKnown RBP6.23□□□□□ -1.41
RIF1-203ENST00000428287 CFAP53Q96M91 514 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 PCM1Q15154 2024 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 PRPF40AO75400 957 aaKnown RBP6.23□□□□□ -1.41
RIF1-203ENST00000428287 INTS3Q68E01 1043 aaKnown RBP6.23□□□□□ -1.41
RIF1-203ENST00000428287 KDM4AO75164 1064 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 ATP7AQ04656 1500 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 CPSF1Q10570 1443 aaKnown RBP6.23□□□□□ -1.41
RIF1-203ENST00000428287 CFAP70Q5T0N1 1121 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 ANKRD44Q8N8A2 993 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 KCND1Q9NSA2 647 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 NOB1Q9ULX3 412 aaKnown RBP6.23□□□□□ -1.41
RIF1-203ENST00000428287 HECW2Q9P2P5 1572 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 MX1P20591 662 aa6.23□□□□□ -1.41
RIF1-203ENST00000428287 ARID3CA6NKF2 412 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 CAVIN2O95810 425 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 UBE2HP62256 183 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 TTC22Q5TAA0 569 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 ANKRD45Q5TZF3 282 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 RGPD8O14715 1765 aaPredicted RBP6.22□□□□□ -1.41
RIF1-203ENST00000428287 RBM6P78332 1123 aaKnown RBP6.22□□□□□ -1.41
RIF1-203ENST00000428287 TPM3P06753 285 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 TSC1Q92574 1164 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 WDR81Q562E7 1941 aa6.22□□□□□ -1.41
RIF1-203ENST00000428287 RIOK3O14730 519 aaKnown RBP6.22□□□□□ -1.41
RIF1-203ENST00000428287 UGGT1Q9NYU2 1555 aa6.21□□□□□ -1.41
RIF1-203ENST00000428287 SDSP20132 328 aa6.21□□□□□ -1.41
RIF1-203ENST00000428287 MORC1Q86VD1 984 aa6.21□□□□□ -1.41
RIF1-203ENST00000428287 RRP7AQ9Y3A4 280 aaKnown RBP6.21□□□□□ -1.41
RIF1-203ENST00000428287 RPAP1Q9BWH6 1393 aaPredicted RBP6.21□□□□□ -1.41
RIF1-203ENST00000428287 ARHGEF40Q8TER5 1519 aa6.21□□□□□ -1.42
RIF1-203ENST00000428287 FCHSD2O94868 740 aa6.21□□□□□ -1.42
RIF1-203ENST00000428287 TAF7LQ5H9L4 462 aa6.21□□□□□ -1.42
RIF1-203ENST00000428287 TSR2Q969E8 191 aaKnown RBP6.21□□□□□ -1.42
RIF1-203ENST00000428287 KIF1BPQ96EK5 621 aa6.21□□□□□ -1.42
RIF1-203ENST00000428287 TMX3Q96JJ7 454 aa6.21□□□□□ -1.42
RIF1-203ENST00000428287 NAP1L2Q9ULW6 460 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms