RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-209	ENST00000425836	ZCRB1	Q8TBF4	217 aa	Known RBP	32.81	■■■□□ 2.84
VEGFA-209	ENST00000425836	BRWD3	Q6RI45	1802 aa		32.81	■■■□□ 2.84
VEGFA-209	ENST00000425836	HMOX1	P09601	288 aa		32.8	■■■□□ 2.84
VEGFA-209	ENST00000425836	MARCH10	Q8NA82	808 aa	Predicted RBP	32.8	■■■□□ 2.84
VEGFA-209	ENST00000425836	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.75	■■■□□ 2.83
VEGFA-209	ENST00000425836	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.75	■■■□□ 2.83	2e-10	■□□□□ 9.4
VEGFA-209	ENST00000425836	DDX54	Q8TDD1	881 aa	Known RBP	32.75	■■■□□ 2.83
VEGFA-209	ENST00000425836	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.74	■■■□□ 2.83	7e-31	■□□□□ 9.1
VEGFA-209	ENST00000425836	FAM196A	Q6ZSG2	479 aa		32.73	■■■□□ 2.83
VEGFA-209	ENST00000425836	SPG7	Q9UQ90	795 aa		32.72	■■■□□ 2.83
VEGFA-209	ENST00000425836	PLEKHG2	Q9H7P9	1386 aa		32.72	■■■□□ 2.83
VEGFA-209	ENST00000425836	CCDC184	Q52MB2	194 aa		32.7	■■■□□ 2.82
VEGFA-209	ENST00000425836	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.7	■■■□□ 2.82
VEGFA-209	ENST00000425836	CYP27B1	O15528	508 aa		32.69	■■■□□ 2.82
VEGFA-209	ENST00000425836	RSPH6A	Q9H0K4	717 aa		32.69	■■■□□ 2.82
VEGFA-209	ENST00000425836	PCDH11X	Q9BZA7	1347 aa		32.69	■■■□□ 2.82
VEGFA-209	ENST00000425836	PCDH11Y	Q9BZA8	1340 aa		32.69	■■■□□ 2.82
VEGFA-209	ENST00000425836	AMOT	Q4VCS5	1084 aa		32.68	■■■□□ 2.82
VEGFA-209	ENST00000425836	DIEXF	Q68CQ4	756 aa	Known RBP	32.68	■■■□□ 2.82
VEGFA-209	ENST00000425836	FCHSD2	O94868	740 aa		32.66	■■■□□ 2.82
VEGFA-209	ENST00000425836	BCL9	O00512	1426 aa		32.65	■■■□□ 2.82
VEGFA-209	ENST00000425836	PRKAR2B	P31323	418 aa		32.65	■■■□□ 2.82
VEGFA-209	ENST00000425836	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.63	■■■□□ 2.81	5e-12	■□□□□ 9.5
VEGFA-209	ENST00000425836	PKD1L3	Q7Z443	1732 aa		32.63	■■■□□ 2.81
VEGFA-209	ENST00000425836	SOCS7	O14512	581 aa		32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	PHKG2	P15735	406 aa		32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	IFNL2	Q8IZJ0	200 aa		32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	EP400	Q96L91	3159 aa		32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	SHANK3	Q9BYB0	1731 aa		32.62	■■■□□ 2.81
VEGFA-209	ENST00000425836	PHACTR3	Q96KR7	559 aa		32.61	■■■□□ 2.81
VEGFA-209	ENST00000425836	MTHFSD	Q2M296	383 aa	Known RBP	32.6	■■■□□ 2.81
VEGFA-209	ENST00000425836	TRIM37	O94972	964 aa		32.59	■■■□□ 2.81
VEGFA-209	ENST00000425836	WDR43	Q15061	677 aa	Known RBP eCLIP	32.59	■■■□□ 2.81	8e-10	■□□□□ 9.2
VEGFA-209	ENST00000425836	NKX1-1	Q15270	411 aa	Predicted RBP	32.59	■■■□□ 2.81
VEGFA-209	ENST00000425836	MRS2	Q9HD23	443 aa		32.59	■■■□□ 2.81
VEGFA-209	ENST00000425836	ACSBG1	Q96GR2	724 aa		32.57	■■■□□ 2.8
VEGFA-209	ENST00000425836	PLEKHF1	Q96S99	279 aa		32.57	■■■□□ 2.8
VEGFA-209	ENST00000425836	ADAMTS8	Q9UP79	889 aa		32.57	■■■□□ 2.8
VEGFA-209	ENST00000425836	CCDC125	Q86Z20	511 aa		32.55	■■■□□ 2.8
VEGFA-209	ENST00000425836	KCNQ2	O43526	872 aa		32.54	■■■□□ 2.8
VEGFA-209	ENST00000425836	C1orf141	Q5JVX7	400 aa		32.54	■■■□□ 2.8
VEGFA-209	ENST00000425836	PTF1A	Q7RTS3	328 aa		32.54	■■■□□ 2.8
VEGFA-209	ENST00000425836	PNN	Q9H307	717 aa	Known RBP	32.54	■■■□□ 2.8
VEGFA-209	ENST00000425836	AKAP4	Q5JQC9	854 aa		32.53	■■■□□ 2.8
VEGFA-209	ENST00000425836	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.53	■■■□□ 2.8
VEGFA-209	ENST00000425836	GAS2L2	Q8NHY3	880 aa		32.52	■■■□□ 2.8
VEGFA-209	ENST00000425836	PNISR	Q8TF01	805 aa	Known RBP	32.52	■■■□□ 2.8
VEGFA-209	ENST00000425836	HSP90AB1	P08238	724 aa	Known RBP	32.51	■■■□□ 2.79
VEGFA-209	ENST00000425836	PRIM1	P49642	420 aa	Known RBP	32.5	■■■□□ 2.79
VEGFA-209	ENST00000425836	DCAF5	Q96JK2	942 aa		32.49	■■■□□ 2.79
VEGFA-209	ENST00000425836	SF3B2	Q13435	895 aa	Known RBP	32.49	■■■□□ 2.79
VEGFA-209	ENST00000425836	NEFM	P07197	916 aa		32.48	■■■□□ 2.79
VEGFA-209	ENST00000425836	MPRIP	Q6WCQ1	1025 aa		32.48	■■■□□ 2.79
VEGFA-209	ENST00000425836	SYTL4	Q96C24	671 aa	Predicted RBP	32.47	■■■□□ 2.79
VEGFA-209	ENST00000425836	CCDC146	Q8IYE0	955 aa		32.46	■■■□□ 2.79
VEGFA-209	ENST00000425836	MAPK8IP3	Q9UPT6	1336 aa		32.45	■■■□□ 2.79
VEGFA-209	ENST00000425836	KDM6A	O15550	1401 aa	Predicted RBP	32.45	■■■□□ 2.79
VEGFA-209	ENST00000425836	APBA3	O96018	575 aa		32.45	■■■□□ 2.78
VEGFA-209	ENST00000425836	MIER1	Q8N108	512 aa		32.45	■■■□□ 2.78
VEGFA-209	ENST00000425836	GNAT3	A8MTJ3	354 aa		32.43	■■■□□ 2.78
VEGFA-209	ENST00000425836	CCER2	I3L3R5	266 aa		32.43	■■■□□ 2.78
VEGFA-209	ENST00000425836	RUNDC1	Q96C34	613 aa		32.43	■■■□□ 2.78
VEGFA-209	ENST00000425836	SBF2	Q86WG5	1849 aa		32.42	■■■□□ 2.78
VEGFA-209	ENST00000425836	LGR6	Q9HBX8	967 aa		32.42	■■■□□ 2.78
VEGFA-209	ENST00000425836	MAP3K5	Q99683	1374 aa		32.42	■■■□□ 2.78
VEGFA-209	ENST00000425836	ERVV-2	B6SEH9	535 aa		32.41	■■■□□ 2.78
VEGFA-209	ENST00000425836	DEFB132	Q7Z7B7	95 aa		32.41	■■■□□ 2.78
VEGFA-209	ENST00000425836	RNMT	O43148	476 aa	Known RBP	32.41	■■■□□ 2.78
VEGFA-209	ENST00000425836	NFE2L2	Q16236	605 aa		32.41	■■■□□ 2.78
VEGFA-209	ENST00000425836	NHS	Q6T4R5	1651 aa		32.4	■■■□□ 2.78
VEGFA-209	ENST00000425836	DOT1L	Q8TEK3	1739 aa		32.39	■■■□□ 2.78
VEGFA-209	ENST00000425836	BAG6	P46379	1132 aa		32.39	■■■□□ 2.78
VEGFA-209	ENST00000425836	PIGB	Q92521	554 aa		32.38	■■■□□ 2.77
VEGFA-209	ENST00000425836	TOGARAM1	Q9Y4F4	1720 aa		32.38	■■■□□ 2.77
VEGFA-209	ENST00000425836	EN1	Q05925	392 aa	Predicted RBP	32.37	■■■□□ 2.77
VEGFA-209	ENST00000425836	IL17RE	Q8NFR9	667 aa		32.37	■■■□□ 2.77
VEGFA-209	ENST00000425836	TNS1	Q9HBL0	1735 aa	Known RBP	32.37	■■■□□ 2.77
VEGFA-209	ENST00000425836	TMOD3	Q9NYL9	352 aa		32.36	■■■□□ 2.77
VEGFA-209	ENST00000425836	CABP4	P57796	275 aa		32.36	■■■□□ 2.77
VEGFA-209	ENST00000425836	PLSCR1	O15162	318 aa		32.35	■■■□□ 2.77
VEGFA-209	ENST00000425836	FAM9B	Q8IZU0	186 aa		32.35	■■■□□ 2.77
VEGFA-209	ENST00000425836	TMPO	P42166	694 aa	Known RBP	32.34	■■■□□ 2.77
VEGFA-209	ENST00000425836	HTATSF1	O43719	755 aa	Known RBP	32.33	■■■□□ 2.77
VEGFA-209	ENST00000425836	NFATC2IP	Q8NCF5	419 aa		32.33	■■■□□ 2.77
VEGFA-209	ENST00000425836	CAMKK2	Q96RR4	588 aa		32.33	■■■□□ 2.77
VEGFA-209	ENST00000425836	RTF1	Q92541	710 aa	Known RBP	32.32	■■■□□ 2.77
VEGFA-209	ENST00000425836	RIPK4	P57078	832 aa		32.32	■■■□□ 2.76
VEGFA-209	ENST00000425836	SLC52A2	Q9HAB3	445 aa		32.32	■■■□□ 2.76
VEGFA-209	ENST00000425836	RRP7A	Q9Y3A4	280 aa	Known RBP	32.32	■■■□□ 2.76
VEGFA-209	ENST00000425836	EZH2	Q15910	746 aa	Known RBP	32.31	■■■□□ 2.76
VEGFA-209	ENST00000425836	MCM10	Q7L590	875 aa		32.31	■■■□□ 2.76
VEGFA-209	ENST00000425836	CEMIP	Q8WUJ3	1361 aa		32.3	■■■□□ 2.76
VEGFA-209	ENST00000425836	DCTN1	Q14203	1278 aa		32.3	■■■□□ 2.76
VEGFA-209	ENST00000425836	APAF1	O14727	1248 aa		32.29	■■■□□ 2.76
VEGFA-209	ENST00000425836	ADAMTS7	Q9UKP4	1686 aa		32.28	■■■□□ 2.76
VEGFA-209	ENST00000425836	KAT6B	Q8WYB5	2073 aa		32.28	■■■□□ 2.76
VEGFA-209	ENST00000425836	NEUROD2	Q15784	382 aa		32.28	■■■□□ 2.76
VEGFA-209	ENST00000425836	BTAF1	O14981	1849 aa		32.27	■■■□□ 2.76
VEGFA-209	ENST00000425836	PROM2	Q8N271	834 aa		32.27	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms