RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 ST18O60284 1047 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.74■□□□□ 0.592e-6■□□□□ 9.9
C9orf3-204ENST00000424143 IL17RAQ96F46 866 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 COG3Q96JB2 828 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 EMILIN1Q9Y6C2 1016 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 MCM2P49736 904 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 CEP85Q6P2H3 762 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.74■□□□□ 0.59
C9orf3-204ENST00000424143 RBM42Q9BTD8 480 aaKnown RBP18.74■□□□□ 0.59
C9orf3-204ENST00000424143 THUMPD2Q9BTF0 503 aaKnown RBP18.74■□□□□ 0.59
C9orf3-204ENST00000424143 LMBRD1Q9NUN5 540 aa18.74■□□□□ 0.59
C9orf3-204ENST00000424143 ITSN1Q15811 1721 aa18.73■□□□□ 0.59
C9orf3-204ENST00000424143 EPB41L2O43491 1005 aaKnown RBP18.73■□□□□ 0.59
C9orf3-204ENST00000424143 RTL1A6NKG5 1358 aa18.73■□□□□ 0.59
C9orf3-204ENST00000424143 NRXN3Q9Y4C0 1643 aa18.73■□□□□ 0.59
C9orf3-204ENST00000424143 CPS1P31327 1500 aa18.72■□□□□ 0.59
C9orf3-204ENST00000424143 CCDC61Q9Y6R9 512 aa18.72■□□□□ 0.59
C9orf3-204ENST00000424143 HMMRO75330 724 aa18.71■□□□□ 0.59
C9orf3-204ENST00000424143 PDLIM2Q96JY6 352 aa18.71■□□□□ 0.59
C9orf3-204ENST00000424143 ARXQ96QS3 562 aa18.71■□□□□ 0.59
C9orf3-204ENST00000424143 RGPD1P0DJD0 1748 aa18.71■□□□□ 0.59
C9orf3-204ENST00000424143 ARHGEF10O15013 1369 aa18.7■□□□□ 0.58
C9orf3-204ENST00000424143 OFD1O75665 1012 aa18.7■□□□□ 0.58
C9orf3-204ENST00000424143 SDSP20132 328 aa18.7■□□□□ 0.58
C9orf3-204ENST00000424143 MCM5P33992 734 aa18.7■□□□□ 0.58
C9orf3-204ENST00000424143 KLHL34Q8N239 644 aa18.7■□□□□ 0.58
C9orf3-204ENST00000424143 ERC2O15083 957 aa18.69■□□□□ 0.58
C9orf3-204ENST00000424143 NME9Q86XW9 330 aa18.69■□□□□ 0.58
C9orf3-204ENST00000424143 NUDT16Q96DE0 195 aaKnown RBP18.69■□□□□ 0.58
C9orf3-204ENST00000424143 FBXO31Q5XUX0 539 aaPredicted RBP18.68■□□□□ 0.58
C9orf3-204ENST00000424143 WAPLQ7Z5K2 1190 aa18.68■□□□□ 0.58
C9orf3-204ENST00000424143 STAG3Q9UJ98 1225 aa18.68■□□□□ 0.58
C9orf3-204ENST00000424143 ANAPC15P60006 121 aa18.67■□□□□ 0.58
C9orf3-204ENST00000424143 HSP90AA2PQ14568 343 aaPredicted RBP18.67■□□□□ 0.58
C9orf3-204ENST00000424143 NALCNQ8IZF0 1738 aa18.67■□□□□ 0.58
C9orf3-204ENST00000424143 SOS1Q07889 1333 aaPredicted RBP18.67■□□□□ 0.58
C9orf3-204ENST00000424143 ELL2O00472 640 aaPredicted RBP18.67■□□□□ 0.58
C9orf3-204ENST00000424143 CCT4P50991 539 aaKnown RBP18.67■□□□□ 0.58
C9orf3-204ENST00000424143 ZSCAN23Q3MJ62 389 aa18.67■□□□□ 0.58
C9orf3-204ENST00000424143 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.67■□□□□ 0.58
C9orf3-204ENST00000424143 CRB1P82279 1406 aa18.66■□□□□ 0.58
C9orf3-204ENST00000424143 SSH2Q76I76 1423 aa18.66■□□□□ 0.58
C9orf3-204ENST00000424143 TUBGCP6Q96RT7 1819 aa18.66■□□□□ 0.58
C9orf3-204ENST00000424143 ZNF500O60304 480 aaPredicted RBP18.66■□□□□ 0.58
C9orf3-204ENST00000424143 MBD3O95983 291 aa18.66■□□□□ 0.58
C9orf3-204ENST00000424143 TTC21BQ7Z4L5 1316 aa18.66■□□□□ 0.58
C9orf3-204ENST00000424143 HDGFP51858 240 aaKnown RBP18.65■□□□□ 0.58
C9orf3-204ENST00000424143 CUL4AQ13619 759 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 MCTP1Q6DN14 999 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 INTS4Q96HW7 963 aaKnown RBP18.65■□□□□ 0.58
C9orf3-204ENST00000424143 FOXD4L1Q9NU39 408 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 NOL7Q9UMY1 257 aaKnown RBP18.65■□□□□ 0.58
C9orf3-204ENST00000424143 USP31Q70CQ4 1352 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 OVOS2A0A0J9YW53 1432 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 OVOS2Q6IE36 1432 aa18.65■□□□□ 0.58
C9orf3-204ENST00000424143 FBLN1P23142 703 aa18.64■□□□□ 0.57
C9orf3-204ENST00000424143 C16orf71Q8IYS4 520 aaPredicted RBP18.63■□□□□ 0.57
C9orf3-204ENST00000424143 TOPAZ1Q8N9V7 1692 aa18.63■□□□□ 0.57
C9orf3-204ENST00000424143 CACNA1FO60840 1977 aa18.63■□□□□ 0.57
C9orf3-204ENST00000424143 N4BP2Q86UW6 1770 aaPredicted RBP18.63■□□□□ 0.57
C9orf3-204ENST00000424143 EIF4A2Q14240 407 aaKnown RBP18.63■□□□□ 0.57
C9orf3-204ENST00000424143 ZDHHC9Q9Y397 364 aa18.63■□□□□ 0.57
C9orf3-204ENST00000424143 SALL3Q9BXA9 1300 aa18.63■□□□□ 0.57
C9orf3-204ENST00000424143 MSH6P52701 1360 aa18.63■□□□□ 0.57
C9orf3-204ENST00000424143 MSNP26038 577 aaKnown RBP18.62■□□□□ 0.57
C9orf3-204ENST00000424143 LRSAM1Q6UWE0 723 aa18.62■□□□□ 0.57
C9orf3-204ENST00000424143 AOX1Q06278 1338 aa18.62■□□□□ 0.57
C9orf3-204ENST00000424143 PLEKHG3A1L390 1219 aa18.61■□□□□ 0.57
C9orf3-204ENST00000424143 FAM83GA6ND36 823 aa18.61■□□□□ 0.57
C9orf3-204ENST00000424143 HTATSF1O43719 755 aaKnown RBP18.61■□□□□ 0.57
C9orf3-204ENST00000424143 PDE1AP54750 535 aa18.61■□□□□ 0.57
C9orf3-204ENST00000424143 AK9Q5TCS8 1911 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 SRCIN1Q9C0H9 1055 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 STAP2Q9UGK3 403 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 METP08581 1390 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 MCCP23508 829 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 CSPP1Q1MSJ5 1256 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 CAVIN1Q6NZI2 390 aaKnown RBP18.6■□□□□ 0.57
C9orf3-204ENST00000424143 PDCL3Q9H2J4 239 aa18.6■□□□□ 0.57
C9orf3-204ENST00000424143 BRD1O95696 1058 aa18.59■□□□□ 0.57
C9orf3-204ENST00000424143 OTUD7AQ8TE49 926 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-204ENST00000424143 MEIS3Q99687 375 aa18.59■□□□□ 0.57
C9orf3-204ENST00000424143 RBSNQ9H1K0 784 aa18.59■□□□□ 0.57
C9orf3-204ENST00000424143 ZRANB1Q9UGI0 708 aa18.59■□□□□ 0.57
C9orf3-204ENST00000424143 RRS1Q15050 365 aaKnown RBP18.58■□□□□ 0.56
C9orf3-204ENST00000424143 SULT6B1Q6IMI4 303 aa18.58■□□□□ 0.56
C9orf3-204ENST00000424143 GPT2Q8TD30 523 aa18.58■□□□□ 0.56
C9orf3-204ENST00000424143 MAP7D2Q96T17 732 aa18.58■□□□□ 0.56
C9orf3-204ENST00000424143 BABAM1Q9NWV8 329 aa18.58■□□□□ 0.56
C9orf3-204ENST00000424143 GNAI2P04899 355 aa18.57■□□□□ 0.56
C9orf3-204ENST00000424143 DCTN1Q14203 1278 aa18.57■□□□□ 0.56
C9orf3-204ENST00000424143 KDRP35968 1356 aa18.57■□□□□ 0.56
C9orf3-204ENST00000424143 PRPF40AO75400 957 aaKnown RBP18.56■□□□□ 0.56
C9orf3-204ENST00000424143 GNAI3P08754 354 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 KIAA1211Q6ZU35 1233 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 ESYT1Q9BSJ8 1104 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 PXDNLA1KZ92 1463 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 PEAK1Q9H792 1746 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 SYAP1Q96A49 352 aaPredicted RBP18.56■□□□□ 0.56
C9orf3-204ENST00000424143 TMX3Q96JJ7 454 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms