RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 PLEKHG1Q9ULL1 1385 aa6.3□□□□□ -1.4
SF3B1-202ENST00000409915 STRCP1A6NGW2 1772 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 RBM47A0AV96 593 aaKnown RBP6.29□□□□□ -1.4
SF3B1-202ENST00000409915 NUTM2FA1L443 756 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 ARHGAP33O14559 1287 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 SKIV2LQ15477 1246 aaKnown RBP6.29□□□□□ -1.4
SF3B1-202ENST00000409915 PPP4R3BQ5MIZ7 849 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 ADAMTS13Q76LX8 1427 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 STAC3Q96MF2 364 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 KCNK17Q96T54 332 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 ADAM33Q9BZ11 813 aa6.29□□□□□ -1.4
SF3B1-202ENST00000409915 NRXN3Q9Y4C0 1643 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 CARNS1A5YM72 827 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 GNPATO15228 680 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 PROCA1Q8NCQ7 364 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-202ENST00000409915 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.28□□□□□ -1.4
SF3B1-202ENST00000409915 CERKQ8TCT0 537 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 GLMNQ92990 594 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 PCDHGA10Q9Y5H3 936 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 PPLO60437 1756 aa6.28□□□□□ -1.4
SF3B1-202ENST00000409915 DHX57Q6P158 1386 aaKnown RBP6.28□□□□□ -1.4
SF3B1-202ENST00000409915 SPDYE16A6NNV3 312 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-202ENST00000409915 SMARCA5O60264 1052 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-202ENST00000409915 PRIM1P49642 420 aaKnown RBP6.27□□□□□ -1.41
SF3B1-202ENST00000409915 PDIA6Q15084 440 aa6.27□□□□□ -1.41
SF3B1-202ENST00000409915 ERICH6BQ5W0A0 696 aa6.27□□□□□ -1.41
SF3B1-202ENST00000409915 ADGRD1Q6QNK2 874 aa6.27□□□□□ -1.41
SF3B1-202ENST00000409915 RBM33Q96EV2 1170 aaKnown RBP6.27□□□□□ -1.41
SF3B1-202ENST00000409915 SNRKQ9NRH2 765 aa6.27□□□□□ -1.41
SF3B1-202ENST00000409915 SETBP1Q9Y6X0 1596 aa6.27□□□□□ -1.41
SF3B1-202ENST00000409915 ADGRF5Q8IZF2 1346 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 PTPRUQ92729 1446 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 CPS1P31327 1500 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 LRRC7Q96NW7 1537 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 IFT172Q9UG01 1749 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.26□□□□□ -1.41
SF3B1-202ENST00000409915 FECHP22830 423 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 HDGFP51858 240 aaKnown RBP6.26□□□□□ -1.41
SF3B1-202ENST00000409915 WWC1Q8IX03 1113 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 MRRFQ96E11 262 aaKnown RBP6.26□□□□□ -1.41
SF3B1-202ENST00000409915 SPATA32Q96LK8 384 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 REPIN1Q9BWE0 567 aaKnown RBP6.26□□□□□ -1.41
SF3B1-202ENST00000409915 KIAA1522Q9P206 1035 aaPredicted RBP6.26□□□□□ -1.41
SF3B1-202ENST00000409915 METP08581 1390 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 DIP2AQ14689 1571 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 NWD1Q149M9 1564 aa6.26□□□□□ -1.41
SF3B1-202ENST00000409915 POM121CA8CG34 1229 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 COL9A1P20849 921 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 RFX1P22670 979 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 DDX12PQ92771 950 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 SIN3AQ96ST3 1273 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 BCL2L12Q9HB09 334 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 SETD1AO15047 1707 aaKnown RBP6.25□□□□□ -1.41
SF3B1-202ENST00000409915 ASXL1Q8IXJ9 1541 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 PIK3C2GO75747 1445 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 RPGRIP1LQ68CZ1 1315 aa6.25□□□□□ -1.41
SF3B1-202ENST00000409915 NKTRP30414 1462 aaKnown RBP6.24□□□□□ -1.41
SF3B1-202ENST00000409915 MYOM2P54296 1465 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 TMEM94Q12767 1356 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 HRO43593 1189 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 KCNA6P17658 529 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 HIC1Q14526 733 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 BANK1Q8NDB2 785 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 DRC1Q96MC2 740 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 GDPD2Q9HCC8 539 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 TBX22Q9Y458 520 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 XRN1Q8IZH2 1706 aaKnown RBP6.24□□□□□ -1.41
SF3B1-202ENST00000409915 ALKQ9UM73 1620 aa6.24□□□□□ -1.41
SF3B1-202ENST00000409915 NRXN1Q9ULB1 1477 aa6.23□□□□□ -1.41
SF3B1-202ENST00000409915 ZDHHC16Q969W1 377 aa6.23□□□□□ -1.41
SF3B1-202ENST00000409915 POLR3EQ9NVU0 708 aa6.23□□□□□ -1.41
SF3B1-202ENST00000409915 CHD2O14647 1828 aaKnown RBP6.22□□□□□ -1.41
SF3B1-202ENST00000409915 XIRP1Q702N8 1843 aaKnown RBP6.22□□□□□ -1.41
SF3B1-202ENST00000409915 UBAP1LF5GYI3 381 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 NCLP19338 710 aaKnown RBP6.22□□□□□ -1.41
SF3B1-202ENST00000409915 ABL2P42684 1182 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 CFAP70Q5T0N1 1121 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 TMEM132EQ6IEE7 984 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 ANKRD13AQ8IZ07 590 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 DCAF11Q8TEB1 546 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 FBXO41Q8TF61 875 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 SREK1Q8WXA9 508 aaKnown RBP6.22□□□□□ -1.41
SF3B1-202ENST00000409915 VRTNQ9H8Y1 702 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 VPS9D1Q9Y2B5 631 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 IQSEC2Q5JU85 1478 aa6.22□□□□□ -1.41
SF3B1-202ENST00000409915 PIK3R4Q99570 1358 aa6.21□□□□□ -1.41
SF3B1-202ENST00000409915 ROBO2Q9HCK4 1378 aa6.21□□□□□ -1.41
SF3B1-202ENST00000409915 GRXCR2A6NFK2 248 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 FCHSD2O94868 740 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 TCF3P15923 654 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 PIP4K2BP78356 416 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 TSR1Q2NL82 804 aaKnown RBP6.21□□□□□ -1.42
SF3B1-202ENST00000409915 PROX2Q3B8N5 592 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 CERS3Q8IU89 383 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 ZBED2Q9BTP6 218 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.21□□□□□ -1.42
SF3B1-202ENST00000409915 STK26Q9P289 416 aa6.21□□□□□ -1.42
SF3B1-202ENST00000409915 PHF14O94880 888 aa6.2□□□□□ -1.42
SF3B1-202ENST00000409915 PTPREP23469 700 aa6.2□□□□□ -1.42
SF3B1-202ENST00000409915 RFC5P40937 340 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms