RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 CLASRPQ8N2M8 674 aaKnown RBP12.97□□□□□ -0.33
CCDC40-204ENST00000397545 ATAD2Q6PL18 1390 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 GLI2P10070 1586 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 TPM3P06753 285 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 PIP4K2BP78356 416 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 RRS1Q15050 365 aaKnown RBP12.96□□□□□ -0.33
CCDC40-204ENST00000397545 TTC5Q8N0Z6 440 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 MBD3O95983 291 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 GTF2E1P29083 439 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-204ENST00000397545 TPD52L1Q16890 204 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-204ENST00000397545 ERC2O15083 957 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 GNAI3P08754 354 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 CEBPZQ03701 1054 aaKnown RBP12.96□□□□□ -0.33
CCDC40-204ENST00000397545 PROSER2Q86WR7 435 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-204ENST00000397545 FMNL2Q96PY5 1086 aa12.96□□□□□ -0.33
CCDC40-204ENST00000397545 PSME1Q06323 249 aa12.96□□□□□ -0.34
CCDC40-204ENST00000397545 IL1RAPL2Q9NP60 686 aa12.96□□□□□ -0.34
CCDC40-204ENST00000397545 CCDC39Q9UFE4 941 aa12.96□□□□□ -0.34
CCDC40-204ENST00000397545 ZRANB1Q9UGI0 708 aa12.96□□□□□ -0.34
CCDC40-204ENST00000397545 DCTN1Q14203 1278 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 TRIM5Q9C035 493 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 RLBP1P12271 317 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 CPLX2Q6PUV4 134 aaKnown RBP12.95□□□□□ -0.34
CCDC40-204ENST00000397545 SDF4Q9BRK5 362 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 KDM2BQ8NHM5 1336 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 XPCQ01831 940 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-204ENST00000397545 CCDC73Q6ZRK6 1079 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 RIC3Q7Z5B4 369 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 NOC3LQ8WTT2 800 aaKnown RBP12.95□□□□□ -0.34
CCDC40-204ENST00000397545 SETBP1Q9Y6X0 1596 aa12.95□□□□□ -0.34
CCDC40-204ENST00000397545 TULP4Q9NRJ4 1543 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 DDX58O95786 925 aaKnown RBP12.94□□□□□ -0.34
CCDC40-204ENST00000397545 CCDC173Q0VFZ6 552 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 FSD1Q9BTV5 496 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 PPLO60437 1756 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 NEXMIFQ5QGS0 1516 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 NME9Q86XW9 330 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 GOLGA6L1Q8N7Z2 621 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 TSPY26PQ9H489 355 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 MIS18AQ9NYP9 233 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 GNAI2P04899 355 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 HSP90AB4PQ58FF6 505 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 UPF3BQ9BZI7 483 aaKnown RBP12.94□□□□□ -0.34
CCDC40-204ENST00000397545 EXOC6BQ9Y2D4 811 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 SIGLEC1Q9BZZ2 1709 aa12.94□□□□□ -0.34
CCDC40-204ENST00000397545 HSPA2P54652 639 aa12.93□□□□□ -0.34
CCDC40-204ENST00000397545 EMILIN1Q9Y6C2 1016 aa12.93□□□□□ -0.34
CCDC40-204ENST00000397545 NEURL4Q96JN8 1562 aa12.93□□□□□ -0.34
CCDC40-204ENST00000397545 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-204ENST00000397545 SMARCA5O60264 1052 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-204ENST00000397545 ARHGAP31Q2M1Z3 1444 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 AKAP17AQ02040 695 aaKnown RBP12.92□□□□□ -0.34
CCDC40-204ENST00000397545 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 IFT172Q9UG01 1749 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 HDGFL1Q5TGJ6 251 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 CCDC30Q5VVM6 783 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 RIMS2Q9UQ26 1411 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 ATF3P18847 181 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 STK3Q13188 491 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 NSD2O96028 1365 aa12.92□□□□□ -0.34
CCDC40-204ENST00000397545 WASHC4Q2M389 1173 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 PUS7Q96PZ0 661 aaKnown RBP12.91□□□□□ -0.34
CCDC40-204ENST00000397545 SYNE3Q6ZMZ3 975 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 THEMISQ8N1K5 641 aaPredicted RBP12.91□□□□□ -0.34
CCDC40-204ENST00000397545 PIK3C2BO00750 1634 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 ATP2B1P20020 1258 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 TRDNQ13061 729 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 TRIM29Q14134 588 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 NCBP3Q53F19 620 aaKnown RBP12.91□□□□□ -0.34
CCDC40-204ENST00000397545 NLRP2Q9NX02 1062 aa12.91□□□□□ -0.34
CCDC40-204ENST00000397545 ABCC11Q96J66 1382 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 NUDT16Q96DE0 195 aaKnown RBP12.9□□□□□ -0.34
CCDC40-204ENST00000397545 DNAJC2Q99543 621 aaKnown RBP12.9□□□□□ -0.34
CCDC40-204ENST00000397545 SIL1Q9H173 461 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 SYCE3A1L190 88 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 DDX54Q8TDD1 881 aaKnown RBP12.9□□□□□ -0.34
CCDC40-204ENST00000397545 LRRCC1Q9C099 1032 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 PCDHB15Q9Y5E8 787 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 SSFA2P28290 1259 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 MCM2P49736 904 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 ESCO1Q5FWF5 840 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 NFXL1Q6ZNB6 911 aa12.9□□□□□ -0.34
CCDC40-204ENST00000397545 CT47B1P0C2W7 299 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-204ENST00000397545 TRIM27P14373 513 aa12.89□□□□□ -0.35
CCDC40-204ENST00000397545 WASLO00401 505 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-204ENST00000397545 ABTB2Q8N961 1025 aa12.89□□□□□ -0.35
CCDC40-204ENST00000397545 MARCH6O60337 910 aa12.89□□□□□ -0.35
CCDC40-204ENST00000397545 TPM2P07951 284 aa12.89□□□□□ -0.35
CCDC40-204ENST00000397545 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-204ENST00000397545 CIZ1Q9ULV3 898 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-204ENST00000397545 CWC22Q9HCG8 908 aaKnown RBP12.88□□□□□ -0.35
CCDC40-204ENST00000397545 TSR1Q2NL82 804 aaKnown RBP12.88□□□□□ -0.35
CCDC40-204ENST00000397545 RAPGEF4Q8WZA2 1011 aa12.88□□□□□ -0.35
CCDC40-204ENST00000397545 POLKQ9UBT6 870 aa12.88□□□□□ -0.35
CCDC40-204ENST00000397545 A0A0U1RQG5 324 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-204ENST00000397545 MCM10Q7L590 875 aa12.88□□□□□ -0.35
CCDC40-204ENST00000397545 RALYLQ86SE5 291 aaKnown RBP12.88□□□□□ -0.35
CCDC40-204ENST00000397545 TRIM35Q9UPQ4 493 aa12.88□□□□□ -0.35
CCDC40-204ENST00000397545 C8orf34Q49A92 452 aa12.88□□□□□ -0.35
CCDC40-204ENST00000397545 FERMT3Q86UX7 667 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms