RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 ATF3P18847 181 aa16.35■□□□□ 0.21
COL4A3-202ENST00000396578 CBX1P83916 185 aa16.35■□□□□ 0.21
COL4A3-202ENST00000396578 CDCA7LQ96GN5 454 aa16.35■□□□□ 0.21
COL4A3-202ENST00000396578 TICAM2Q86XR7 235 aa16.35■□□□□ 0.21
COL4A3-202ENST00000396578 EXOSC9Q06265 439 aaKnown RBP16.34■□□□□ 0.21
COL4A3-202ENST00000396578 SSBP05455 408 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL4A3-202ENST00000396578 ANAPC15P60006 121 aa16.34■□□□□ 0.21
COL4A3-202ENST00000396578 IFFO1Q0D2I5 559 aa16.34■□□□□ 0.21
COL4A3-202ENST00000396578 CABP2Q9NPB3 220 aa16.34■□□□□ 0.21
COL4A3-202ENST00000396578 KLHL34Q8N239 644 aa16.34■□□□□ 0.21
COL4A3-202ENST00000396578 CTNNA3Q9UI47 895 aa16.34■□□□□ 0.21
COL4A3-202ENST00000396578 CCDC97Q96F63 343 aaPredicted RBP16.34■□□□□ 0.21
COL4A3-202ENST00000396578 JAKMIP1Q96N16 626 aaKnown RBP16.34■□□□□ 0.21
COL4A3-202ENST00000396578 PPM1EQ8WY54 764 aa16.33■□□□□ 0.21
COL4A3-202ENST00000396578 PLEKHO1Q53GL0 409 aaPredicted RBP16.33■□□□□ 0.2
COL4A3-202ENST00000396578 UBAC1Q9BSL1 405 aa16.33■□□□□ 0.2
COL4A3-202ENST00000396578 SIL1Q9H173 461 aa16.33■□□□□ 0.2
COL4A3-202ENST00000396578 SLC4A2P04920 1241 aa16.33■□□□□ 0.2
COL4A3-202ENST00000396578 CCDC183Q5T5S1 534 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 GOPCQ9HD26 462 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 JPH4Q96JJ6 628 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 FAM177BA6PVY3 158 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 PRKAR2BP31323 418 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 PRDM10Q9NQV6 1147 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 FKBP4Q02790 459 aaKnown RBP eCLIP16.32■□□□□ 0.2
COL4A3-202ENST00000396578 LUZP1Q86V48 1076 aa16.32■□□□□ 0.2
COL4A3-202ENST00000396578 CASTP20810 708 aaKnown RBP16.31■□□□□ 0.2
COL4A3-202ENST00000396578 MVPQ14764 893 aaKnown RBP16.31■□□□□ 0.2
COL4A3-202ENST00000396578 CAMK4Q16566 473 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 CWC27Q6UX04 472 aaKnown RBP16.31■□□□□ 0.2
COL4A3-202ENST00000396578 VPS36Q86VN1 386 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 TDO2P48775 406 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 HDGFL1Q5TGJ6 251 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 FKBP15Q5T1M5 1219 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 DNAI2Q9GZS0 605 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 SMC1AQ14683 1233 aaKnown RBP16.31■□□□□ 0.2
COL4A3-202ENST00000396578 NUTM2GQ5VZR2 741 aa16.31■□□□□ 0.2
COL4A3-202ENST00000396578 PPP2R1AP30153 589 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 RNF187Q5TA31 235 aaPredicted RBP16.3■□□□□ 0.2
COL4A3-202ENST00000396578 CCDC178Q5BJE1 867 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 AACSQ86V21 672 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 BCCIPQ9P287 314 aaKnown RBP eCLIP16.3■□□□□ 0.2
COL4A3-202ENST00000396578 ATF7IPQ6VMQ6 1270 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 ANO10Q9NW15 660 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 ZNF76P36508 570 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 SPATA24Q86W54 205 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 NLRP6P59044 892 aa16.3■□□□□ 0.2
COL4A3-202ENST00000396578 GSTTP1A0A1W2PQM5 241 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 KIF4BQ2VIQ3 1234 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 CCDC83Q8IWF9 413 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 RAI14Q9P0K7 980 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 BCAR3O75815 825 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 ABTB2Q8N961 1025 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 GPRASP1Q5JY77 1395 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 URI1O94763 535 aaPredicted RBP16.29■□□□□ 0.2
COL4A3-202ENST00000396578 CCDC175P0C221 793 aa16.29■□□□□ 0.2
COL4A3-202ENST00000396578 TOP1P11387 765 aaKnown RBP16.29■□□□□ 0.2
COL4A3-202ENST00000396578 FGD6Q6ZV73 1430 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 POTEB2H3BUK9 544 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 FGFR1OPO95684 399 aaKnown RBP16.28■□□□□ 0.2
COL4A3-202ENST00000396578 CACNA2D4Q7Z3S7 1137 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 MPHOSPH8Q99549 860 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 PLEKHH1Q9ULM0 1364 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 POLR3GO15318 223 aaPredicted RBP16.28■□□□□ 0.2
COL4A3-202ENST00000396578 TSG101Q99816 390 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 WDR63Q8IWG1 891 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 TAOK3Q9H2K8 898 aa16.28■□□□□ 0.2
COL4A3-202ENST00000396578 GPATCH11Q8N954 259 aa16.27■□□□□ 0.2
COL4A3-202ENST00000396578 CLIP2Q9UDT6 1046 aa16.27■□□□□ 0.2
COL4A3-202ENST00000396578 TSR2Q969E8 191 aaKnown RBP16.27■□□□□ 0.2
COL4A3-202ENST00000396578 PAFAH1B1P43034 410 aa16.27■□□□□ 0.2
COL4A3-202ENST00000396578 MPHOSPH10O00566 681 aaKnown RBP16.27■□□□□ 0.19
COL4A3-202ENST00000396578 UBE4AQ14139 1066 aa16.27■□□□□ 0.19
COL4A3-202ENST00000396578 GIGYF2Q6Y7W6 1299 aaKnown RBP16.27■□□□□ 0.19
COL4A3-202ENST00000396578 USO1O60763 962 aaKnown RBP16.26■□□□□ 0.19
COL4A3-202ENST00000396578 HOOK3Q86VS8 718 aa16.26■□□□□ 0.19
COL4A3-202ENST00000396578 IBSPP21815 317 aaPredicted RBP16.26■□□□□ 0.19
COL4A3-202ENST00000396578 CTR9Q6PD62 1173 aa16.26■□□□□ 0.19
COL4A3-202ENST00000396578 NAA15Q9BXJ9 866 aaKnown RBP16.26■□□□□ 0.19
COL4A3-202ENST00000396578 FEZ1Q99689 392 aa16.26■□□□□ 0.19
COL4A3-202ENST00000396578 PNISRQ8TF01 805 aaKnown RBP16.26■□□□□ 0.19
COL4A3-202ENST00000396578 CTAGE5O15320 804 aa16.25■□□□□ 0.19
COL4A3-202ENST00000396578 NUP88Q99567 741 aaPredicted RBP16.25■□□□□ 0.19
COL4A3-202ENST00000396578 RBM42Q9BTD8 480 aaKnown RBP16.25■□□□□ 0.19
COL4A3-202ENST00000396578 SRGAP3O43295 1099 aa16.25■□□□□ 0.19
COL4A3-202ENST00000396578 NEMFO60524 1076 aa16.25■□□□□ 0.19
COL4A3-202ENST00000396578 TNNT1P13805 278 aa16.25■□□□□ 0.19
COL4A3-202ENST00000396578 SCAND2PQ9GZW5 306 aaPredicted RBP16.25■□□□□ 0.19
COL4A3-202ENST00000396578 SEC63Q9UGP8 760 aaKnown RBP16.25■□□□□ 0.19
COL4A3-202ENST00000396578 U3KPZ7 1027 aaPredicted RBP16.24■□□□□ 0.19
COL4A3-202ENST00000396578 ANKRD18BA2A2Z9 1011 aa16.24■□□□□ 0.19
COL4A3-202ENST00000396578 KLHL10Q6JEL2 608 aa16.24■□□□□ 0.19
COL4A3-202ENST00000396578 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
COL4A3-202ENST00000396578 SPECC1Q5M775 1068 aa16.24■□□□□ 0.19
COL4A3-202ENST00000396578 SPECC1LQ69YQ0 1117 aa16.24■□□□□ 0.19
COL4A3-202ENST00000396578 RBM5P52756 815 aaKnown RBP eCLIP16.23■□□□□ 0.19
COL4A3-202ENST00000396578 GSDMDP57764 484 aa16.23■□□□□ 0.19
COL4A3-202ENST00000396578 SMARCC1Q92922 1105 aaPredicted RBP16.23■□□□□ 0.19
COL4A3-202ENST00000396578 PTPRGP23470 1445 aa16.23■□□□□ 0.19
COL4A3-202ENST00000396578 MYL6BP14649 208 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms