RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ZFYVE27Q5T4F4 411 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 RNF20Q5VTR2 975 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 SUPT20HQ8NEM7 779 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 SIL1Q9H173 461 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 ZMYM3Q14202 1370 aa11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 KCNA4P22459 653 aa11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 ERC1Q8IUD2 1116 aa11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 TTC16Q8NEE8 873 aa11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 PCMTD1Q96MG8 357 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 ANO2Q9NQ90 1003 aa11.11□□□□□ -0.63
LIMCH1-202ENST00000381753 WASLO00401 505 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 MYCP01106 439 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 RBM6P78332 1123 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 CNBD1Q8NA66 436 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 TDO2P48775 406 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 MKNK2Q9HBH9 465 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 PICK1Q9NRD5 415 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 FKBP4Q02790 459 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 NIP7Q9Y221 180 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 B4DLN1 442 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 NEBLO76041 1014 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 MRPL12P52815 198 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 FSD1Q9BTV5 496 aa11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 RBM27Q9P2N5 1060 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-202ENST00000381753 LDHCP07864 332 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 SKIV2LQ15477 1246 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 ZBTB3Q9H5J0 574 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 A0A0U1RQG5 324 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 ANKRD18BA2A2Z9 1011 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 CUL5Q93034 780 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 IQGAP2Q13576 1575 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 SLC5A1P13866 664 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 HOOK2Q96ED9 719 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 GPHNQ9NQX3 736 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 YEATS2Q9ULM3 1422 aa11.09□□□□□ -0.63
LIMCH1-202ENST00000381753 BRDTQ58F21 947 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 HECW1Q76N89 1606 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 EPS15P42566 896 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 IFIT5Q13325 482 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 CCDC97Q96F63 343 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 TMEM106CQ9BVX2 250 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 TSR1Q2NL82 804 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 SLC4A8Q2Y0W8 1093 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 SULF1Q8IWU6 871 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 SIRT1Q96EB6 747 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 EHMT1Q9H9B1 1298 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 GRIN3BO60391 1043 aa11.08□□□□□ -0.64
LIMCH1-202ENST00000381753 AFF2P51816 1311 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 CCDC152Q4G0S7 254 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 TMOD4Q9NZQ9 345 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 ZBTB24O43167 697 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 ANKRD45Q5TZF3 282 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 CLASRPQ8N2M8 674 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 EIF4G3O43432 1585 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 IDH1O75874 414 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 SMCR8Q8TEV9 937 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 NSFL1CQ9UNZ2 370 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 YY1P25490 414 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 ZKSCAN2Q63HK3 967 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 RUNDC1Q96C34 613 aa11.07□□□□□ -0.64
LIMCH1-202ENST00000381753 KIF14Q15058 1648 aa11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 SPOUT1Q5T280 376 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 ZNF804AQ7Z570 1209 aa11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 ANKRD18AQ8IVF6 992 aa11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 SLC12A5Q9H2X9 1139 aa11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 SPTY2D1Q68D10 685 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 MYD88Q99836 296 aa11.06□□□□□ -0.64
LIMCH1-202ENST00000381753 BAG3O95817 575 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 TAF12Q16514 161 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 SEPT12Q8IYM1 358 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 CNGA1P29973 690 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 ZNF444Q8N0Y2 327 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 SURF6O75683 361 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 ZHX3Q9H4I2 956 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 GNAI3P08754 354 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 HSPA1LP34931 641 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 SPC25Q9HBM1 224 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 CSADQ9Y600 493 aa11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 ZNF335Q9H4Z2 1342 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-202ENST00000381753 ZBTB7AO95365 584 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 NFE2L2Q16236 605 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 ZMYND15Q9H091 742 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 PODXL2Q9NZ53 605 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 R3HDM1Q15032 1099 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 GSTO1P78417 241 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 RIMS2Q9UQ26 1411 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 BMS1Q14692 1282 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 LRSAM1Q6UWE0 723 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 SRCIN1Q9C0H9 1055 aa11.04□□□□□ -0.64
LIMCH1-202ENST00000381753 CCDC141Q6ZP82 1450 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 ZBTB33Q86T24 672 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 AKAP2Q9Y2D5 859 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 ACEP12821 1306 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 PPIP5K2O43314 1243 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 CSPP1Q1MSJ5 1256 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 DZIP3Q86Y13 1208 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 NUP133Q8WUM0 1156 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 DDX17Q92841 729 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 PDCL3Q9H2J4 239 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms