RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 FOXD4L5Q5VV16 416 aaPredicted RBP11.57□□□□□ -0.56
SF3A3-201ENST00000373019 FOXD4L4Q8WXT5 416 aaPredicted RBP11.57□□□□□ -0.56
SF3A3-201ENST00000373019 RNF17Q9BXT8 1623 aaKnown RBP11.56□□□□□ -0.56
SF3A3-201ENST00000373019 RBM6P78332 1123 aaKnown RBP11.56□□□□□ -0.56
SF3A3-201ENST00000373019 RAD51AP2Q09MP3 1159 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 KMT5BQ4FZB7 885 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 CYP2C19P33261 490 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 KDM4AO75164 1064 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 GADD45BO75293 160 aaPredicted RBP11.56□□□□□ -0.56
SF3A3-201ENST00000373019 NFATC2IPQ8NCF5 419 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 PLA2R1Q13018 1463 aa11.56□□□□□ -0.56
SF3A3-201ENST00000373019 DUOX2Q9NRD8 1548 aa11.55□□□□□ -0.56
SF3A3-201ENST00000373019 TMEM57Q8N5G2 664 aa11.55□□□□□ -0.56
SF3A3-201ENST00000373019 EFCC1Q9HA90 598 aa11.55□□□□□ -0.56
SF3A3-201ENST00000373019 NOP2P46087 812 aaKnown RBP11.55□□□□□ -0.56
SF3A3-201ENST00000373019 USP26Q9BXU7 913 aa11.55□□□□□ -0.56
SF3A3-201ENST00000373019 POLR3AO14802 1390 aaPredicted RBP11.55□□□□□ -0.56
SF3A3-201ENST00000373019 EIF2AK4Q9P2K8 1649 aaKnown RBP11.55□□□□□ -0.56
SF3A3-201ENST00000373019 HCLS1P14317 486 aaPredicted RBP11.55□□□□□ -0.56
SF3A3-201ENST00000373019 ATF7IPQ6VMQ6 1270 aa11.55□□□□□ -0.56
SF3A3-201ENST00000373019 FRMPD1Q5SYB0 1578 aa11.54□□□□□ -0.56
SF3A3-201ENST00000373019 FAM193AP78312 1265 aa11.54□□□□□ -0.56
SF3A3-201ENST00000373019 RUNDC1Q96C34 613 aa11.54□□□□□ -0.56
SF3A3-201ENST00000373019 SMTNL1A8MU46 457 aa11.54□□□□□ -0.56
SF3A3-201ENST00000373019 BRD1O95696 1058 aa11.54□□□□□ -0.56
SF3A3-201ENST00000373019 DIP2CQ9Y2E4 1556 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 CLTCL1P53675 1640 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 SMARCA5O60264 1052 aaPredicted RBP11.53□□□□□ -0.56
SF3A3-201ENST00000373019 GSPT1P15170 499 aaKnown RBP11.53□□□□□ -0.56
SF3A3-201ENST00000373019 CCDC27Q2M243 656 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 ANKRD45Q5TZF3 282 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 CDC45O75419 566 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 SSH1Q8WYL5 1049 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 KIF1BPQ96EK5 621 aa11.53□□□□□ -0.56
SF3A3-201ENST00000373019 SYAP1Q96A49 352 aaPredicted RBP11.53□□□□□ -0.56
SF3A3-201ENST00000373019 IQGAP1P46940 1657 aa11.52□□□□□ -0.56
SF3A3-201ENST00000373019 SMC4Q9NTJ3 1288 aa11.52□□□□□ -0.56
SF3A3-201ENST00000373019 NOB1Q9ULX3 412 aaKnown RBP11.52□□□□□ -0.56
SF3A3-201ENST00000373019 HDAC5Q9UQL6 1122 aa11.52□□□□□ -0.56
SF3A3-201ENST00000373019 PPIP5K1Q6PFW1 1433 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 TCHHQ07283 1943 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 KIDINS220Q9ULH0 1771 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 LOC102724159A0A0B4J2E5 919 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 PWP2Q15269 919 aaKnown RBP11.52□□□□□ -0.57
SF3A3-201ENST00000373019 GDPD2Q9HCC8 539 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 RSPH14Q9UHP6 348 aa11.52□□□□□ -0.57
SF3A3-201ENST00000373019 CARD14Q9BXL6 1004 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 PHF14O94880 888 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 TSR2Q969E8 191 aaKnown RBP11.51□□□□□ -0.57
SF3A3-201ENST00000373019 SIRT1Q96EB6 747 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 ZNF446Q9NWS9 450 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 NOS1P29475 1434 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 INO80Q9ULG1 1556 aaPredicted RBP11.51□□□□□ -0.57
SF3A3-201ENST00000373019 ABCA6Q8N139 1617 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 KDM4FA0A1W2PPD8 638 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 FBXO31Q5XUX0 539 aaPredicted RBP11.51□□□□□ -0.57
SF3A3-201ENST00000373019 CREBRFQ8IUR6 639 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 C16orf45Q96MC5 204 aaPredicted RBP11.51□□□□□ -0.57
SF3A3-201ENST00000373019 KCNG1Q9UIX4 513 aa11.51□□□□□ -0.57
SF3A3-201ENST00000373019 ZNF397Q8NF99 534 aaPredicted RBP11.5□□□□□ -0.57
SF3A3-201ENST00000373019 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.5□□□□□ -0.57
SF3A3-201ENST00000373019 DHX16O60231 1041 aaKnown RBP11.5□□□□□ -0.57
SF3A3-201ENST00000373019 PRR29P0C7W0 189 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 FBXO38Q6PIJ6 1188 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 USP48Q86UV5 1035 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 SPC24Q8NBT2 197 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 SCAF11Q99590 1463 aaKnown RBP11.5□□□□□ -0.57
SF3A3-201ENST00000373019 FUCA2Q9BTY2 467 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 MAST1Q9Y2H9 1570 aa11.5□□□□□ -0.57
SF3A3-201ENST00000373019 MYCNP04198 464 aaPredicted RBP11.49□□□□□ -0.57
SF3A3-201ENST00000373019 ST18O60284 1047 aa11.49□□□□□ -0.57
SF3A3-201ENST00000373019 EXOSC9Q06265 439 aaKnown RBP11.49□□□□□ -0.57
SF3A3-201ENST00000373019 AGLP35573 1532 aa11.49□□□□□ -0.57
SF3A3-201ENST00000373019 CEP152O94986 1710 aa11.49□□□□□ -0.57
SF3A3-201ENST00000373019 TPM3P06753 285 aa11.49□□□□□ -0.57
SF3A3-201ENST00000373019 CT47B1P0C2W7 299 aaPredicted RBP11.49□□□□□ -0.57
SF3A3-201ENST00000373019 TNNT1P13805 278 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 PTGS1P23219 599 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 SIRT2Q8IXJ6 389 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 GCC1Q96CN9 775 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 NOL10Q9BSC4 688 aaKnown RBP11.48□□□□□ -0.57
SF3A3-201ENST00000373019 PAXBP1Q9Y5B6 917 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 REC8O95072 547 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 PLCB2Q00722 1185 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 TMX1Q9H3N1 280 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 ERBB3P21860 1342 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 CCDC112Q8NEF3 446 aa11.48□□□□□ -0.57
SF3A3-201ENST00000373019 GYS2P54840 703 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 LRMPQ12912 555 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 CCDC183Q5T5S1 534 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 MX1P20591 662 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 FOXD4L6Q3SYB3 417 aaPredicted RBP11.47□□□□□ -0.57
SF3A3-201ENST00000373019 FOXD4L3Q6VB84 417 aaPredicted RBP11.47□□□□□ -0.57
SF3A3-201ENST00000373019 TMX3Q96JJ7 454 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 POLKQ9UBT6 870 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 TNNT3P45378 269 aaPredicted RBP11.47□□□□□ -0.57
SF3A3-201ENST00000373019 RASSF4Q9H2L5 321 aa11.47□□□□□ -0.57
SF3A3-201ENST00000373019 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.47□□□□□ -0.57
SF3A3-201ENST00000373019 ZNF215Q9UL58 517 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms